CU117831 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU117831
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	UBX domain-containing protein 6
Location	Chr5 : 19264563 .. 19264754 (-)
Sequence length	192

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTCTTATCAGGGAAGCCAACACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAATTTAGGAAGATTCGTCTGAGTAATCCCAAAAATTAAGGAGGCAATTGGTGAGGCTGTTGGGGGAGTGGAATTGTTGGAGTTTGTGGGTTTTAAATTGCAAGAGGA

Library


Library category	ESTs
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU117831 vs. Swiss-Prot
Match: PUX2_ARATH (Plant UBX domain-containing protein 2 OS=Arabidopsis thaliana GN=PUX2 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 7.9e-09
Identity = 24/39 (61.54%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           +LSGKP++ S+D++L+L +NIV+EPEN+KFRK+R+SN K
Sbjct: 173 YLSGKPSESSIDVLLRLFKNIVKEPENAKFRKVRMSNAK 211

Query: 61   118
           
Sbjct: 233  211

HSP 2 Score: 41.6 bits (96), Expect = 3.8e-03
Identity = 19/25 (76.00%), Postives = 20/25 (80.00%), Query Frame = 2


Query: 116 KIKEAIGEAVGGVELLEFVGFKLQE 175
           KIKEAIG+  GGVELLE VGF+L+E
Sbjct: 211 KIKEAIGDVAGGVELLELVGFELKE 235

Query: 176  191
           
Sbjct: 271  235

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BLAST of CU117831 vs. TrEMBL
Match: A0A0A0KUN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G545560 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-12
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK
Sbjct: 175 FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 213

Query: 61   118
           
Sbjct: 235  213

[Close]

BLAST of CU117831 vs. TrEMBL
Match: A0A0A0KUN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G545560 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.1e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 2


Query: 113 PKIKEAIGEAVGGVELLEFVGFKLQE 172
           PKIKEAIGEAVGGVELLEFVGFKLQE
Sbjct: 212 PKIKEAIGEAVGGVELLEFVGFKLQE 237

Query: 173  191
           
Sbjct: 272  237

HSP 2 Score: 67.4 bits (163), Expect = 7.2e-09
Identity = 27/39 (69.23%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           ++SGKP++GS+D++LKLL+N+VREPEN KFRKIR+ NPK
Sbjct: 187 YVSGKPSEGSMDVILKLLKNVVREPENGKFRKIRMGNPK 225

Query: 61   118
           
Sbjct: 247  225

[Close]

BLAST of CU117831 vs. TrEMBL
Match: A0A068TXP8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032933001 PE=4 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.4e-02
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = 2


Query: 113 PKIKEAIGEAVGGVELLEFVGFKLQE 172
           PKIKEAIG+ VG VELLE VGFKL E
Sbjct: 224 PKIKEAIGDVVGAVELLECVGFKLNE 249

Query: 173  191
           
Sbjct: 284  249

HSP 2 Score: 67.0 bits (162), Expect = 9.4e-09
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           ++SGKP++GS D+VLKLLRNI REPEN KFRKIR++NPK
Sbjct: 166 YISGKPSEGSFDVVLKLLRNIAREPENVKFRKIRMNNPK 204

Query: 61   118
           
Sbjct: 226  204

[Close]

BLAST of CU117831 vs. TrEMBL
Match: A0A151T3B8_CAJCA (UBX domain-containing protein 6 OS=Cajanus cajan GN=KK1_016033 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.5e-02
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 2


Query: 113 PKIKEAIGEAVGGVELLEFVGFKLQE 172
           PKIKEA+G+  GGVELL FVGF+L+E
Sbjct: 203 PKIKEAVGDVAGGVELLSFVGFELRE 228

Query: 173  191
           
Sbjct: 263  228

HSP 2 Score: 66.6 bits (161), Expect = 1.2e-08
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           FLSGKP +GS+++VLKLLRNIV+EP N KFRK+R+SNPK
Sbjct: 180 FLSGKPAEGSIEVVLKLLRNIVKEPGNDKFRKLRMSNPK 218

Query: 61   118
           
Sbjct: 240  218

[Close]

BLAST of CU117831 vs. TrEMBL
Match: A0A0D2SHX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G158800 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-02
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 2


Query: 113 PKIKEAIGEAVGGVELLEFVGFKLQE 172
           PKI+EAIGE  GGVELLEFVGF+L+E
Sbjct: 217 PKIREAIGEVAGGVELLEFVGFELEE 242

Query: 173  191
           
Sbjct: 277  242

HSP 2 Score: 66.6 bits (161), Expect = 1.2e-08
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           FLS KP +GS++++LKLLRN+VREP+N KFRKIRLSNPK
Sbjct: 190 FLSAKPKEGSIEVMLKLLRNVVREPDNEKFRKIRLSNPK 228

Query: 61   118
           
Sbjct: 250  228

[Close]

BLAST of CU117831 vs. NCBI nr
Match: gi|778703847|ref|XP_011655442.1| (PREDICTED: UBX domain-containing protein 6 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-12
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK
Sbjct: 175 FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 213

Query: 61   118
           
Sbjct: 235  213

[Close]

BLAST of CU117831 vs. NCBI nr
Match: gi|659072806|ref|XP_008467106.1| (PREDICTED: UBX domain-containing protein 6 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           FL+GKP+QGSLDIVLKLLRNIVREPENSKFRKIRLSNPK
Sbjct: 175 FLAGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 213

Query: 61   118
           
Sbjct: 235  213

[Close]

BLAST of CU117831 vs. NCBI nr
Match: gi|502138337|ref|XP_004503367.1| (PREDICTED: plant UBX domain-containing protein 2 [Cicer arietinum])

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-09
Identity = 30/39 (76.92%), Postives = 38/39 (97.44%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           ++SGKP++GS+D+VLKLLRNIVREPEN KFRKIR++NPK
Sbjct: 174 YVSGKPSEGSIDVVLKLLRNIVREPENVKFRKIRMNNPK 212

Query: 61   118
           
Sbjct: 234  212

[Close]

BLAST of CU117831 vs. NCBI nr
Match: gi|1012100499|ref|XP_015957231.1| (PREDICTED: plant UBX domain-containing protein 2 [Arachis duranensis])

HSP 1 Score: 67.8 bits (164), Expect = 7.9e-09
Identity = 29/39 (74.36%), Postives = 38/39 (97.44%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           ++SGKP+ GS+DI+LKLL+N+VREPEN+KFRKIRL+NPK
Sbjct: 161 YVSGKPSHGSIDILLKLLKNVVREPENAKFRKIRLANPK 199

Query: 61   118
           
Sbjct: 221  199

[Close]

BLAST of CU117831 vs. NCBI nr
Match: gi|661896254|emb|CDP00832.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-08
Identity = 27/39 (69.23%), Postives = 37/39 (94.87%), Query Frame = 1


Query: 1   FLSGKPTQGSLDIVLKLLRNIVREPENSKFRKIRLSNPK 60
           ++SGKP++GS+D++LKLL+N+VREPEN KFRKIR+ NPK
Sbjct: 187 YVSGKPSEGSMDVILKLLKNVVREPENGKFRKIRMGNPK 225

Query: 61   118
           
Sbjct: 247  225

The following BLAST results are available for this feature:

BLAST of CU117831 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PUX2_ARATH	7.9e-09	61.54	Plant UBX domain-containing protein 2 OS=Arabidopsis thaliana GN=PUX2 PE=1 SV=2	[more]

BLAST of CU117831 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUN7_CUCSA	1.8e-12	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G545560 PE=4 SV=1	[more]
A0A0A0KUN7_CUCSA	8.1e-05	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G545560 PE=4 SV=1	[more]
A0A068TXP8_COFCA	8.4e-02	80.77	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032933001 PE=4 SV=1	[more]
A0A151T3B8_CAJCA	6.5e-02	73.08	UBX domain-containing protein 6 OS=Cajanus cajan GN=KK1_016033 PE=4 SV=1	[more]
A0A0D2SHX6_GOSRA	1.0e-02	80.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G158800 PE=4 SV=1	[more]

BLAST of CU117831 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703847\|ref\|XP_011655442.1\|	2.6e-12	100.00	PREDICTED: UBX domain-containing protein 6 [Cucumis sativus]	[more]
gi\|659072806\|ref\|XP_008467106.1\|	1.7e-11	94.87	PREDICTED: UBX domain-containing protein 6 [Cucumis melo]	[more]
gi\|502138337\|ref\|XP_004503367.1\|	3.6e-09	76.92	PREDICTED: plant UBX domain-containing protein 2 [Cicer arietinum]	[more]
gi\|1012100499\|ref\|XP_015957231.1\|	7.9e-09	74.36	PREDICTED: plant UBX domain-containing protein 2 [Arachis duranensis]	[more]
gi\|661896254\|emb\|CDP00832.1\|	1.0e-08	69.23	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR018997	PUB_domain

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G545560	Csa5G545560	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0104841	H0104841	EST
H0122825	H0122825	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018997	PUB domain	PFAM	PF09409	PUB	coord: 8..63 score: 9.2
IPR018997	PUB domain	SMART	SM00580	PGNneu	coord: 9..64 score: 1.
IPR018997	PUB domain	unknown	SSF143503	PUG domain-like	coord: 6..60 score: 1.96
None	No IPR available	unknown	Coil	Coil	coord: 61..63 scor
None	No IPR available	PANTHER	PTHR23153	UBX-RELATED	coord: 1..63 score: 9.6
None	No IPR available	PANTHER	PTHR23153:SF39	CDC48-INTERACTING UBX-DOMAIN PROTEIN	coord: 1..63 score: 9.6