CU117542 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU117542
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	F-box/WD-40 repeat-containing protein
Location	Chr4 : 10664158 .. 10664416 (-)
Sequence length	266

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGATTGGGTTTGGGGATTAGTCCCTCATGATACCACCGTTGCCAGTACATCAGGCTCAGATGTATATGTTTGGGATACCAATAGTGGGGAATTGGCTACTGTCATTCATGAGGCTCATGTTGGCTATGCTTATGCCCTTGCGCGAAGCCATACAGGGGACTTTCTATTTACTGGAGGGGAAGATGGTGCTATTCACATGTTTGATATAACCAATCGTCATGTCGATACAAGTGCTCAACTGGTTGGATCTTGGATTCCT

Library


Library category	ESTs
fruit (8DPP) library	2

Homology

[Close]

BLAST of CU117542 vs. Swiss-Prot
Match: FBW3_ARATH (F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 8.9e-27
Identity = 53/86 (61.63%), Postives = 62/86 (72.09%), Query Frame = 3


Query: 9   DWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGGE 68
           DWVWGL PH+TT+ASTSGSDVY+WD +S     +I +AH G  Y+LARSHTGDFLFTGGE
Sbjct: 297 DWVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGE 356

Query: 69  DGAIHMFDITNRHVDTSAQLVGSWIP 128
           DG I MF+I     +TS  L+  W+P
Sbjct: 357 DGGIKMFEIRRYGSETSVVLISQWMP 382

Query: 129  188
           
Sbjct: 417  382

Query: 189  248
           
Sbjct: 477  382

Query: 249  267
           
Sbjct: 537  382

[Close]

BLAST of CU117542 vs. TrEMBL
Match: A0A0A0L0C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269200 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 3.9e-45
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 3


Query: 6   GDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGG 65
           GDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGG
Sbjct: 301 GDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGG 360

Query: 66  EDGAIHMFDITNRHVDTSAQLVGSWIP 125
           EDGAIHMFDITNRHVDTSAQLVGSWIP
Sbjct: 361 EDGAIHMFDITNRHVDTSAQLVGSWIP 387

Query: 126  185
           
Sbjct: 421  387

Query: 186  245
           
Sbjct: 481  387

Query: 246  267
           
Sbjct: 541  387

[Close]

BLAST of CU117542 vs. TrEMBL
Match: A0A0B2S1A0_GLYSO (F-box/WD-40 repeat-containing protein OS=Glycine soja GN=glysoja_004108 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.4e-32
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 3


Query: 9   DWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGGE 68
           DWVW LVPHDTTVASTSGSDVYVWDTNSG L T++H AHVG  YALARSHTGDFLFTGGE
Sbjct: 326 DWVWALVPHDTTVASTSGSDVYVWDTNSGALVTIVHNAHVGNTYALARSHTGDFLFTGGE 385

Query: 69  DGAIHMFDITNRHVDTSAQLVGSWIP 128
           DGAIHM++I N   ++    V +WIP
Sbjct: 386 DGAIHMYEIVNDGYESKTWHVAAWIP 411

Query: 129  188
           
Sbjct: 446  411

Query: 189  248
           
Sbjct: 506  411

Query: 249  267
           
Sbjct: 566  411

[Close]

BLAST of CU117542 vs. TrEMBL
Match: A0A151U1T0_CAJCA (F-box/WD-40 repeat-containing protein At5g21040 family OS=Cajanus cajan GN=KK1_005791 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-31
Identity = 63/86 (73.26%), Postives = 72/86 (83.72%), Query Frame = 3


Query: 9   DWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGGE 68
           DWVW LVPHDTTVASTSGSDVYVWDTNSG L T++H AHVG  YALARSHTGDFLFTGGE
Sbjct: 325 DWVWALVPHDTTVASTSGSDVYVWDTNSGALMTIVHNAHVGNTYALARSHTGDFLFTGGE 384

Query: 69  DGAIHMFDITNRHVDTSAQLVGSWIP 128
           DGAIHM++I N   ++ +  V +W+P
Sbjct: 385 DGAIHMYEIVNDGYESKSWHVAAWVP 410

Query: 129  188
           
Sbjct: 445  410

Query: 189  248
           
Sbjct: 505  410

Query: 249  267
           
Sbjct: 565  410

[Close]

BLAST of CU117542 vs. TrEMBL
Match: K7KB35_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.2e-31
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 3


Query: 9   DWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGGE 68
           DWVW LVPH+TTVASTSGSDVYVWDTNSG L T++H AHVG  YALARSHTGDFLFTGGE
Sbjct: 295 DWVWALVPHNTTVASTSGSDVYVWDTNSGALVTIVHNAHVGNTYALARSHTGDFLFTGGE 354

Query: 69  DGAIHMFDITNRHVDTSAQLVGSWIP 128
           DGAIHM++I N   ++    V +WIP
Sbjct: 355 DGAIHMYEIVNDGYESKTWHVAAWIP 380

Query: 129  188
           
Sbjct: 415  380

Query: 189  248
           
Sbjct: 475  380

Query: 249  267
           
Sbjct: 535  380

[Close]

BLAST of CU117542 vs. TrEMBL
Match: I1JIQ1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G273700 PE=4 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 3.2e-31
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 3


Query: 9   DWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGGE 68
           DWVW LVPH+TTVASTSGSDVYVWDTNSG L T++H AHVG  YALARSHTGDFLFTGGE
Sbjct: 326 DWVWALVPHNTTVASTSGSDVYVWDTNSGALVTIVHNAHVGNTYALARSHTGDFLFTGGE 385

Query: 69  DGAIHMFDITNRHVDTSAQLVGSWIP 128
           DGAIHM++I N   ++    V +WIP
Sbjct: 386 DGAIHMYEIVNDGYESKTWHVAAWIP 411

Query: 129  188
           
Sbjct: 446  411

Query: 189  248
           
Sbjct: 506  411

Query: 249  267
           
Sbjct: 566  411

[Close]

BLAST of CU117542 vs. NCBI nr
Match: gi|778692827|ref|XP_011653530.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 5.5e-45
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 3


Query: 6   GDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGG 65
           GDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGG
Sbjct: 301 GDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGG 360

Query: 66  EDGAIHMFDITNRHVDTSAQLVGSWIP 125
           EDGAIHMFDITNRHVDTSAQLVGSWIP
Sbjct: 361 EDGAIHMFDITNRHVDTSAQLVGSWIP 387

Query: 126  185
           
Sbjct: 421  387

Query: 186  245
           
Sbjct: 481  387

Query: 246  267
           
Sbjct: 541  387

[Close]

BLAST of CU117542 vs. NCBI nr
Match: gi|659097885|ref|XP_008449867.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-44
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 3


Query: 6   GDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGG 65
           GDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIH+AHVGYAYALARSHTGDF+FTGG
Sbjct: 301 GDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHDAHVGYAYALARSHTGDFIFTGG 360

Query: 66  EDGAIHMFDITNRHVDTSAQLVGSWIP 125
           EDGAIHMFDITNRHVDTSAQLVGSWIP
Sbjct: 361 EDGAIHMFDITNRHVDTSAQLVGSWIP 387

Query: 126  185
           
Sbjct: 421  387

Query: 186  245
           
Sbjct: 481  387

Query: 246  267
           
Sbjct: 541  387

[Close]

BLAST of CU117542 vs. NCBI nr
Match: gi|734416564|gb|KHN38443.1| (F-box/WD-40 repeat-containing protein [Glycine soja])

HSP 1 Score: 144.4 bits (363), Expect = 9.2e-32
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 3


Query: 9   DWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGGE 68
           DWVW LVPHDTTVASTSGSDVYVWDTNSG L T++H AHVG  YALARSHTGDFLFTGGE
Sbjct: 326 DWVWALVPHDTTVASTSGSDVYVWDTNSGALVTIVHNAHVGNTYALARSHTGDFLFTGGE 385

Query: 69  DGAIHMFDITNRHVDTSAQLVGSWIP 128
           DGAIHM++I N   ++    V +WIP
Sbjct: 386 DGAIHMYEIVNDGYESKTWHVAAWIP 411

Query: 129  188
           
Sbjct: 446  411

Query: 189  248
           
Sbjct: 506  411

Query: 249  267
           
Sbjct: 566  411

[Close]

BLAST of CU117542 vs. NCBI nr
Match: gi|1012361995|gb|KYP73178.1| (F-box/WD-40 repeat-containing protein At5g21040 family [Cajanus cajan])

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 63/86 (73.26%), Postives = 72/86 (83.72%), Query Frame = 3


Query: 9   DWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGGE 68
           DWVW LVPHDTTVASTSGSDVYVWDTNSG L T++H AHVG  YALARSHTGDFLFTGGE
Sbjct: 325 DWVWALVPHDTTVASTSGSDVYVWDTNSGALMTIVHNAHVGNTYALARSHTGDFLFTGGE 384

Query: 69  DGAIHMFDITNRHVDTSAQLVGSWIP 128
           DGAIHM++I N   ++ +  V +W+P
Sbjct: 385 DGAIHMYEIVNDGYESKSWHVAAWVP 410

Query: 129  188
           
Sbjct: 445  410

Query: 189  248
           
Sbjct: 505  410

Query: 249  267
           
Sbjct: 565  410

[Close]

BLAST of CU117542 vs. NCBI nr
Match: gi|571507141|ref|XP_006595810.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Glycine max])

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-31
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 3


Query: 9   DWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLFTGGE 68
           DWVW LVPHDTTVASTSGSDVYVWDT+SG L T++H AHVG  YALARSHTGDFLFTGGE
Sbjct: 327 DWVWALVPHDTTVASTSGSDVYVWDTDSGTLVTIVHNAHVGNTYALARSHTGDFLFTGGE 386

Query: 69  DGAIHMFDITNRHVDTSAQLVGSWIP 128
           DGAIHM++I N   ++ A  V  W+P
Sbjct: 387 DGAIHMYEIVNDGYESKAWHVAVWVP 412

Query: 129  188
           
Sbjct: 447  412

Query: 189  248
           
Sbjct: 507  412

Query: 249  267
           
Sbjct: 567  412

The following BLAST results are available for this feature:

BLAST of CU117542 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FBW3_ARATH	8.9e-27	61.63	F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g2...	[more]

BLAST of CU117542 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0C6_CUCSA	3.9e-45	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269200 PE=4 SV=1	[more]
A0A0B2S1A0_GLYSO	8.4e-32	74.42	F-box/WD-40 repeat-containing protein OS=Glycine soja GN=glysoja_004108 PE=4 SV=...	[more]
A0A151U1T0_CAJCA	1.1e-31	73.26	F-box/WD-40 repeat-containing protein At5g21040 family OS=Cajanus cajan GN=KK1_0...	[more]
K7KB35_SOYBN	3.2e-31	73.26	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
I1JIQ1_SOYBN	3.2e-31	73.26	Uncharacterized protein OS=Glycine max GN=GLYMA_02G273700 PE=4 SV=2	[more]

BLAST of CU117542 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692827\|ref\|XP_011653530.1\|	5.5e-45	100.00	PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis sativus]	[more]
gi\|659097885\|ref\|XP_008449867.1\|	2.1e-44	97.70	PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis melo]	[more]
gi\|734416564\|gb\|KHN38443.1\|	9.2e-32	74.42	F-box/WD-40 repeat-containing protein [Glycine soja]	[more]
gi\|1012361995\|gb\|KYP73178.1\|	1.2e-31	73.26	F-box/WD-40 repeat-containing protein At5g21040 family [Cajanus cajan]	[more]
gi\|571507141\|ref\|XP_006595810.1\|	3.5e-31	73.26	PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR011047	Quinoprotein_ADH-like_supfam
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G269200	Csa4G269200	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KT7TF	FKNP3UI02KT7TF	EST
FKNP3UI02LSRWS	FKNP3UI02LSRWS	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 39..80 score:
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	unknown	SSF50998	Quinoprotein alcohol dehydrogenase-like	coord: 3..81 score: 7.14
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 9..75 score: 3.4
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 16..80 score: 1