CU117508 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU117508
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 3227145 .. 3227491 (+)
Sequence length	346

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAACTTTCCAGAACAACAGCTGACGGCTGAGAGCCATTAAATGGATCTGCACCATAAAGACCAAACTCACCATAACCTTCACAACCAGACGGCAAAGTGGAGCTATCCGTGGAATCACCACCGCCGACTAAACTATCCATCCACTCATCAGATTCAAACTCTCCACCAGCACCACTAAAATTAGGGAAGAATCGAAATCCGGCAGAAGGGTGGTCCAAATTAGGGAAATGAAAAGAAGGGTCGGAGGAATCAGGGGGTGCGGCGACATGAAAAGGGTCAGAGAAGGAAGAGGAAGAAATCCCAAAAGAGAAATTAGGAGAAGAAGAAGAAGAAGCCATAGTTGAGG

Library


Library category	ESTs
fruit (8DPP) library	2

Homology

[Close]

BLAST of CU117508 vs. Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-09
Identity = 37/88 (42.05%), Postives = 43/88 (48.86%), Query Frame = -3


Query: 36  DPFHVXXXXXXXXXXFHFPNLDHPSA-----GFRFFPNFSGA--GGEFESDEWMDSLVGG 95
           DPF V          F FPNLDH  A     GFR   +F G   GGEFESDEWM++L+ G
Sbjct: 65  DPFQVTGGGDSNDPGFPFPNLDHHHATTTGGGFRL-SDFGGGTGGGEFESDEWMETLISG 124

Query: 96  GDSTDSSTLPSGCEGYGEFGLYGADPFN 155
           GDS              ++ +YG DPF+
Sbjct: 125 GDSVADGPDCDTWHDNPDYVIYGPDPFD 151

Query: 156  215
           
Sbjct: 185  151

Query: 216  275
           
Sbjct: 245  151

Query: 276  279
           
Sbjct: 305  151

[Close]

BLAST of CU117508 vs. Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SCL7 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-06
Identity = 33/80 (41.25%), Postives = 40/80 (50.00%), Query Frame = -3


Query: 39  DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 98
           DPF V          FHFP+L+H         N + A  EF+SDEWM+SL+ GGD+  S 
Sbjct: 58  DPFQVTNDPG-----FHFPHLEHHQ-------NAAVASEEFDSDEWMESLINGGDA--SQ 116

Query: 99  TLPSGCEGYGEFGLYGADPF 158
           T P       +F +YG DPF
Sbjct: 118 TNP-------DFPIYGHDPF 116

Query: 159  218
           
Sbjct: 178  116

Query: 219  278
           
Sbjct: 238  116

[Close]

BLAST of CU117508 vs. TrEMBL
Match: A0A0A0KXW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038690 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 9.8e-41
Identity = 81/92 (88.04%), Postives = 81/92 (88.04%), Query Frame = -3


Query: 3   DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 62
           DPFHV          FHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS
Sbjct: 73  DPFHVAAPPDSSDPSFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 132

Query: 63  TLPSGCEGYGEFGLYGADPFNGSQPSAVVLES 122
           TLPSGCEGYGEFGLYGADPFNGS PSAVVLES
Sbjct: 133 TLPSGCEGYGEFGLYGADPFNGSPPSAVVLES 164

Query: 123  182
           
Sbjct: 193  164

Query: 183  242
           
Sbjct: 253  164

Query: 243  279
           
Sbjct: 313  164

[Close]

BLAST of CU117508 vs. TrEMBL
Match: A0A067KR64_JATCU (GRAS22 protein OS=Jatropha curcas GN=GRAS22 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = -3


Query: 39  DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 98
           +PF V          F FP ++H S+GFRF     GAGGEF+SDEWMDSL+GGGDSTDSS
Sbjct: 71  EPFQVSGGGDTGEPGFQFPQMEHHSSGFRFSDFGGGAGGEFDSDEWMDSLIGGGDSTDSS 130

Query: 99  TLPSGCEGY---GEFGLYGADPF 158
            LPSGC+ +    +FGLYG DPF
Sbjct: 131 NLPSGCDAWQNNADFGLYGPDPF 153

Query: 159  218
           
Sbjct: 191  153

Query: 219  278
           
Sbjct: 251  153

[Close]

BLAST of CU117508 vs. TrEMBL
Match: A0A061DH77_THECC (Chitin-inducible gibberellin-responsive protein, putative isoform 1 OS=Theobroma cacao GN=TCM_000399 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = -3


Query: 36  FHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSSTLPSGCEGY---GEF 95
           F FPN++H S+GFRF     GAGGEF+SDEWMDSL+  GDSTDSS LPSGCE +   G+F
Sbjct: 84  FQFPNIEHQSSGFRFPDFCGGAGGEFDSDEWMDSLMNSGDSTDSSNLPSGCEAWQNNGDF 143

Query: 96  GLYGADPFN 155
           GLYGADPF+
Sbjct: 144 GLYGADPFS 152

Query: 156  215
           
Sbjct: 204  152

Query: 216  234
           
Sbjct: 264  152

[Close]

BLAST of CU117508 vs. TrEMBL
Match: W9T187_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026828 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.1e-19
Identity = 49/89 (55.06%), Postives = 60/89 (67.42%), Query Frame = -3


Query: 21  DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 80
           DPF V          F FP+L+  SAGFRF    +G GGEF+SDEWMDS++GGGDSTDSS
Sbjct: 78  DPFQVAGGSDTGEPGFQFPHLEQHSAGFRFSDFCAGPGGEFDSDEWMDSIIGGGDSTDSS 137

Query: 81  TLPSGCEGY---GEFGLYGADPFNGSQPS 140
            LPSGC+ +    +F LYG+DPF  + PS
Sbjct: 138 NLPSGCDAWQSNADFVLYGSDPFATACPS 166

Query: 141  200
           
Sbjct: 198  166

Query: 201  260
           
Sbjct: 258  166

Query: 261  279
           
Sbjct: 318  166

[Close]

BLAST of CU117508 vs. TrEMBL
Match: F6GWW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01660 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-17
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = -3


Query: 3   DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 62
           DPF V          F F +L+H S GFRF     G GGEF+SDEWMDSL+GGGDST+SS
Sbjct: 71  DPFQVAGTADAGEGGFQFAHLEHHSTGFRFSDFSGGGGGEFDSDEWMDSLMGGGDSTESS 130

Query: 63  TLPSGCEGY---GEFGLYGADPFNGSQPSAVVLES 122
            LPSGC+ +    +  LYGADPF  S PS + + S
Sbjct: 131 NLPSGCDAWQNDADLTLYGADPFT-SCPSRLSIAS 164

Query: 123  182
           
Sbjct: 191  164

Query: 183  242
           
Sbjct: 251  164

Query: 243  279
           
Sbjct: 311  164

[Close]

BLAST of CU117508 vs. NCBI nr
Match: gi|449462860|ref|XP_004149153.1| (PREDICTED: scarecrow-like protein 4 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 2.6e-39
Identity = 81/92 (88.04%), Postives = 81/92 (88.04%), Query Frame = -3


Query: 3   DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 62
           DPFHV          FHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS
Sbjct: 73  DPFHVAAPPDSSDPSFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 132

Query: 63  TLPSGCEGYGEFGLYGADPFNGSQPSAVVLES 122
           TLPSGCEGYGEFGLYGADPFNGS PSAVVLES
Sbjct: 133 TLPSGCEGYGEFGLYGADPFNGSPPSAVVLES 164

Query: 123  182
           
Sbjct: 193  164

Query: 183  242
           
Sbjct: 253  164

Query: 243  279
           
Sbjct: 313  164

[Close]

BLAST of CU117508 vs. NCBI nr
Match: gi|659107563|ref|XP_008453739.1| (PREDICTED: scarecrow-like protein 4 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 6.5e-38
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = -3


Query: 3   DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 62
           DPFHV          FHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS
Sbjct: 74  DPFHVAAPPDSSDPSFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 133

Query: 63  TLPSGCEGYGEFGLYGADPFNGSQPSAVVLES 122
           TLPSGCEGYGEFGLYGADPF+GS PS VVLE+
Sbjct: 134 TLPSGCEGYGEFGLYGADPFDGSPPSVVVLEN 165

Query: 123  182
           
Sbjct: 194  165

Query: 183  242
           
Sbjct: 254  165

Query: 243  279
           
Sbjct: 314  165

[Close]

BLAST of CU117508 vs. NCBI nr
Match: gi|1009144638|ref|XP_015889910.1| (PREDICTED: scarecrow-like protein 4 [Ziziphus jujuba])

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = -3


Query: 39  DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 98
           DPF V          F FP+L+H S GFRF    +G GGEF+SDEWMDSL+GGGDSTDSS
Sbjct: 73  DPFQVPGGSDSGEPGFQFPHLEHQSTGFRFSDFGAGPGGEFDSDEWMDSLMGGGDSTDSS 132

Query: 99  TLPSGCEGY---GEFGLYGADPF 158
            LPSGC+ +    +FGLYGADPF
Sbjct: 133 NLPSGCDAWQSNADFGLYGADPF 155

Query: 159  218
           
Sbjct: 193  155

Query: 219  278
           
Sbjct: 253  155

[Close]

BLAST of CU117508 vs. NCBI nr
Match: gi|1009144680|ref|XP_015889931.1| (PREDICTED: scarecrow-like protein 4 [Ziziphus jujuba])

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = -3


Query: 39  DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 98
           DPF V          F FP+L+H S GFRF    +G GGEF+SDEWMDSL+GGGDSTDSS
Sbjct: 73  DPFQVPGGSDSGEPGFQFPHLEHQSTGFRFSDFGAGPGGEFDSDEWMDSLMGGGDSTDSS 132

Query: 99  TLPSGCEGY---GEFGLYGADPF 158
            LPSGC+ +    +FGLYGADPF
Sbjct: 133 NLPSGCDAWQSNADFGLYGADPF 155

Query: 159  218
           
Sbjct: 193  155

Query: 219  278
           
Sbjct: 253  155

[Close]

BLAST of CU117508 vs. NCBI nr
Match: gi|802621122|ref|XP_012075848.1| (PREDICTED: scarecrow-like protein 4 [Jatropha curcas])

HSP 1 Score: 98.2 bits (243), Expect = 9.8e-18
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = -3


Query: 39  DPFHVXXXXXXXXXXFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSS 98
           +PF V          F FP ++H S+GFRF     GAGGEF+SDEWMDSL+GGGDSTDSS
Sbjct: 71  EPFQVSGGGDTGEPGFQFPQMEHHSSGFRFSDFGGGAGGEFDSDEWMDSLIGGGDSTDSS 130

Query: 99  TLPSGCEGY---GEFGLYGADPF 158
            LPSGC+ +    +FGLYG DPF
Sbjct: 131 NLPSGCDAWQNNADFGLYGPDPF 153

Query: 159  218
           
Sbjct: 191  153

Query: 219  278
           
Sbjct: 251  153

The following BLAST results are available for this feature:

BLAST of CU117508 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SCL4_ARATH	2.9e-09	42.05	Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=2 SV=1	[more]
SCL7_ARATH	3.9e-06	41.25	Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SCL7 PE=2 SV=1	[more]

BLAST of CU117508 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXW6_CUCSA	9.8e-41	88.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038690 PE=3 SV=1	[more]
A0A067KR64_JATCU	2.1e-19	57.83	GRAS22 protein OS=Jatropha curcas GN=GRAS22 PE=2 SV=1	[more]
A0A061DH77_THECC	3.6e-19	68.12	Chitin-inducible gibberellin-responsive protein, putative isoform 1 OS=Theobroma...	[more]
W9T187_9ROSA	8.1e-19	55.06	Uncharacterized protein OS=Morus notabilis GN=L484_026828 PE=3 SV=1	[more]
F6GWW8_VITVI	2.0e-17	52.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01660 PE=3 SV=...	[more]

BLAST of CU117508 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462860\|ref\|XP_004149153.1\|	2.6e-39	88.04	PREDICTED: scarecrow-like protein 4 [Cucumis sativus]	[more]
gi\|659107563\|ref\|XP_008453739.1\|	6.5e-38	84.78	PREDICTED: scarecrow-like protein 4 [Cucumis melo]	[more]
gi\|1009144638\|ref\|XP_015889910.1\|	2.0e-18	60.24	PREDICTED: scarecrow-like protein 4 [Ziziphus jujuba]	[more]
gi\|1009144680\|ref\|XP_015889931.1\|	2.0e-18	60.24	PREDICTED: scarecrow-like protein 4 [Ziziphus jujuba]	[more]
gi\|802621122\|ref\|XP_012075848.1\|	9.8e-18	57.83	PREDICTED: scarecrow-like protein 4 [Jatropha curcas]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G038690	Csa4G038690	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KVXAD	FKNP3UI02KVXAD	EST
FKNP3UI02L74CI	FKNP3UI02L74CI	EST