CU117340 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU117340
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	3-deoxy-manno-octulosonate cytidylyltransferase
Location	Chr1 : 2922709 .. 2923013 (-)
Sequence length	306

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGCAATAAGCGAACTAATCGCCCACACTTACTCTCAATTTCTAGTACCACCGTTTGTGTAAAGGATTCGGGTATACTTCCATTATCATCGCTAGCACCGCCATTGCCCATACAGAATCCCCCATCAGTCCCATTATCTTGAGCAATTGAAGGTTTGATGGAGCCCGGTTGAATCACCGAAGAAGCACCCAAAATTACACAATTATCCAAAGTGGATCCGAAATCAGCTCGCCATTTCAACAATACCCCATCATCAATACCCAACTCCCCACTCGGAAGCTCGATCCGAAGGAATCGAATCTCATTG

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU117340 vs. Swiss-Prot
Match: FB285_ARATH (F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-24
Identity = 59/82 (71.95%), Postives = 62/82 (75.61%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           +EIR+LRIELPSGELGIDDGVLLKWRA+FGSTLDNCVILGASSVI P  ++ S A D  T
Sbjct: 168 DEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSVIPPNPMRVSQACDTTT 227

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
                   G  SDDNGSIPESF
Sbjct: 228 ---VVEAPGSGSDDNGSIPESF 246

Query: 180  239
           
Sbjct: 288  246

Query: 240  299
           
Sbjct: 348  246

Query: 300  306
           
Sbjct: 408  246

[Close]

BLAST of CU117340 vs. Swiss-Prot
Match: FB19_ARATH (F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-20
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = -2


Query: 60  EIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGTD 119
           EIRFL+IELP+GELGI+DG+LLKWRADFGSTLDNC+ILGASSVIQ  S+K     +N  D
Sbjct: 164 EIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGASSVIQSNSVK---NHENSVD 223

Query: 120 GGFCMGNGGASDDNGSIPESF 179
                      +DNG+IPESF
Sbjct: 224 -----------EDNGNIPESF 230

Query: 180  239
           
Sbjct: 284  230

Query: 240  299
           
Sbjct: 344  230

Query: 300  303
           
Sbjct: 404  230

[Close]

BLAST of CU117340 vs. Swiss-Prot
Match: FB237_ARATH (F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.3e-20
Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           +EI+FL+IELPSGELGIDDGVLLKWRA+FGSTL+NCVILGASSVI P +   + A     
Sbjct: 159 DEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSVIPPTNSDKTEASSAPV 218

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
                     A +DNGSIPESF
Sbjct: 219 ---------AAVEDNGSIPESF 231

Query: 180  239
           
Sbjct: 279  231

Query: 240  299
           
Sbjct: 339  231

Query: 300  306
           
Sbjct: 399  231

[Close]

BLAST of CU117340 vs. Swiss-Prot
Match: FB303_ARATH (F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.8e-06
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = -2


Query: 105 NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 164
           + IR L +ELP G++ ++ G  +KW+A+FG TL +CVI+   S    G++   +A +  +
Sbjct: 99  DRIRNLDVELPGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSA---GTVSSPVAVEGES 158

Query: 165 DGGFCMG 224
           D  F  G
Sbjct: 159 DAEFVTG 162

Query: 225  284
           
Sbjct: 219  162

Query: 285  306
           
Sbjct: 279  162

[Close]

BLAST of CU117340 vs. TrEMBL
Match: A0A0A0LSD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025900 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.6e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT
Sbjct: 173 NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 232

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           DGGFCMGNGGASDDNGSIPESF
Sbjct: 233 DGGFCMGNGGASDDNGSIPESF 254

Query: 180  239
           
Sbjct: 293  254

Query: 240  299
           
Sbjct: 353  254

Query: 300  306
           
Sbjct: 413  254

[Close]

BLAST of CU117340 vs. TrEMBL
Match: M5WIC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006658mg PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-28
Identity = 66/82 (80.49%), Postives = 68/82 (82.93%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVI PG  K S  QDNG+
Sbjct: 166 NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIHPGPTKISDVQDNGS 225

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           DG     N   SDDNGSIP+SF
Sbjct: 226 DGFCANTNAAVSDDNGSIPDSF 247

Query: 180  239
           
Sbjct: 286  247

Query: 240  299
           
Sbjct: 346  247

Query: 300  306
           
Sbjct: 406  247

[Close]

BLAST of CU117340 vs. TrEMBL
Match: A0A0A0KKP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523990 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.9e-28
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGIDDG+LLKWRADFGSTLDNCVILGA+SVI  GS    + Q+NGT
Sbjct: 176 NEIRFLRIELPSGELGIDDGILLKWRADFGSTLDNCVILGAASVIHVGSFNKHV-QENGT 235

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           D GFC GNG A+DD+GSIPESF
Sbjct: 236 D-GFCSGNGPAADDSGSIPESF 255

Query: 180  239
           
Sbjct: 296  255

Query: 240  299
           
Sbjct: 356  255

Query: 300  306
           
Sbjct: 416  255

[Close]

BLAST of CU117340 vs. TrEMBL
Match: F6HLT5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03880 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-27
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGI+DGVLLKWRADFGSTLDNCVILGA+SVI PG  K S  QD+G 
Sbjct: 169 NEIRFLRIELPSGELGIEDGVLLKWRADFGSTLDNCVILGAASVICPGPTKGSGVQDSGN 228

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           D  FC+ NGG  DDNGSIPESF
Sbjct: 229 D-AFCVSNGG--DDNGSIPESF 247

Query: 180  239
           
Sbjct: 289  247

Query: 240  299
           
Sbjct: 349  247

Query: 300  306
           
Sbjct: 409  247

[Close]

BLAST of CU117340 vs. TrEMBL
Match: H2EIG0_MALDO (F-box family protein OS=Malus domestica GN=FBP PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.3e-27
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVI PG  K S+  D G+
Sbjct: 168 NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIHPGPTKASLFPDTGS 227

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           DG     N   ++DNGSIP+SF
Sbjct: 228 DGLCATNNAAVTEDNGSIPDSF 249

Query: 180  239
           
Sbjct: 288  249

Query: 240  299
           
Sbjct: 348  249

Query: 300  306
           
Sbjct: 408  249

[Close]

BLAST of CU117340 vs. NCBI nr
Match: gi|449439183|ref|XP_004137366.1| (PREDICTED: F-box protein At5g46170-like [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT
Sbjct: 173 NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 232

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           DGGFCMGNGGASDDNGSIPESF
Sbjct: 233 DGGFCMGNGGASDDNGSIPESF 254

Query: 180  239
           
Sbjct: 293  254

Query: 240  299
           
Sbjct: 353  254

Query: 300  306
           
Sbjct: 413  254

[Close]

BLAST of CU117340 vs. NCBI nr
Match: gi|659068455|ref|XP_008444512.1| (PREDICTED: F-box protein At5g46170-like [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSI QDNGT
Sbjct: 173 NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIGQDNGT 232

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           DGGFC+GNGGASDDNGSIPESF
Sbjct: 233 DGGFCIGNGGASDDNGSIPESF 254

Query: 180  239
           
Sbjct: 293  254

Query: 240  299
           
Sbjct: 353  254

Query: 300  306
           
Sbjct: 413  254

[Close]

BLAST of CU117340 vs. NCBI nr
Match: gi|645238075|ref|XP_008225507.1| (PREDICTED: F-box protein At5g46170-like [Prunus mume])

HSP 1 Score: 136.0 bits (341), Expect = 3.8e-29
Identity = 67/82 (81.71%), Postives = 70/82 (85.37%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVI PG  K S  QDNG+
Sbjct: 167 NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIHPGPTKFSDVQDNGS 226

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           DG +   NG  SDDNGSIP+SF
Sbjct: 227 DGFYANTNGAVSDDNGSIPDSF 248

Query: 180  239
           
Sbjct: 287  248

Query: 240  299
           
Sbjct: 347  248

Query: 300  306
           
Sbjct: 407  248

[Close]

BLAST of CU117340 vs. NCBI nr
Match: gi|595878516|ref|XP_007212265.1| (hypothetical protein PRUPE_ppa006658mg [Prunus persica])

HSP 1 Score: 132.1 bits (331), Expect = 5.4e-28
Identity = 66/82 (80.49%), Postives = 68/82 (82.93%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVI PG  K S  QDNG+
Sbjct: 166 NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIHPGPTKISDVQDNGS 225

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           DG     N   SDDNGSIP+SF
Sbjct: 226 DGFCANTNAAVSDDNGSIPDSF 247

Query: 180  239
           
Sbjct: 286  247

Query: 240  299
           
Sbjct: 346  247

Query: 300  306
           
Sbjct: 406  247

[Close]

BLAST of CU117340 vs. NCBI nr
Match: gi|449433627|ref|XP_004134599.1| (PREDICTED: F-box protein At5g46170-like [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 7.1e-28
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = -2


Query: 60  NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIKPSIAQDNGT 119
           NEIRFLRIELPSGELGIDDG+LLKWRADFGSTLDNCVILGA+SVI  GS    + Q+NGT
Sbjct: 176 NEIRFLRIELPSGELGIDDGILLKWRADFGSTLDNCVILGAASVIHVGSFNKHV-QENGT 235

Query: 120 DGGFCMGNGGASDDNGSIPESF 179
           D GFC GNG A+DD+GSIPESF
Sbjct: 236 D-GFCSGNGPAADDSGSIPESF 255

Query: 180  239
           
Sbjct: 296  255

Query: 240  299
           
Sbjct: 356  255

Query: 300  306
           
Sbjct: 416  255

The following BLAST results are available for this feature:

BLAST of CU117340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB285_ARATH	4.7e-24	71.95	F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1	[more]
FB19_ARATH	1.4e-20	64.20	F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2 SV=1	[more]
FB237_ARATH	9.3e-20	63.41	F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1	[more]
FB303_ARATH	5.8e-06	35.82	F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2 SV=1	[more]

BLAST of CU117340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSD6_CUCSA	9.6e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025900 PE=4 SV=1	[more]
M5WIC1_PRUPE	3.8e-28	80.49	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006658mg PE=4 SV=1	[more]
A0A0A0KKP4_CUCSA	4.9e-28	80.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523990 PE=4 SV=1	[more]
F6HLT5_VITVI	7.1e-27	80.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03880 PE=4 SV=...	[more]
H2EIG0_MALDO	9.3e-27	75.61	F-box family protein OS=Malus domestica GN=FBP PE=2 SV=1	[more]

BLAST of CU117340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439183\|ref\|XP_004137366.1\|	1.4e-39	100.00	PREDICTED: F-box protein At5g46170-like [Cucumis sativus]	[more]
gi\|659068455\|ref\|XP_008444512.1\|	1.2e-38	97.56	PREDICTED: F-box protein At5g46170-like [Cucumis melo]	[more]
gi\|645238075\|ref\|XP_008225507.1\|	3.8e-29	81.71	PREDICTED: F-box protein At5g46170-like [Prunus mume]	[more]
gi\|595878516\|ref\|XP_007212265.1\|	5.4e-28	80.49	hypothetical protein PRUPE_ppa006658mg [Prunus persica]	[more]
gi\|449433627\|ref\|XP_004134599.1\|	7.1e-28	80.49	PREDICTED: F-box protein At5g46170-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G025900	Csa1G025900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K39DO	FKNP3UI02K39DO	EST
H0075988	H0075988	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31215	FAMILY NOT NAMED	coord: 2..83 score: 2.6
None	No IPR available	PANTHER	PTHR31215:SF2	SUBFAMILY NOT NAMED	coord: 2..83 score: 2.6