CU117262 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU117262
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 27438038 .. 27438327 (+)
Sequence length	298

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTCATTTTGTAACAGGAAAAACAAATAAGCATCGACGGCTTTGGACATTTCGACAAACAAATCCAAGTGGGTTTGAGGTAAAGGCACATTTTCATCAGCCTTTTCAAACTCAACAGTCCATTTCTGCAAAGCTTTCTCCTATTTCGTTTGATCTTCCATTAACAGCTTCAACCCTTGCTCTAAGCATTTTGTAATAGTTTAGCATATCTCCTTCAACAGCTTCATAGACTATGCATTTCTTAGCATCATCTGCAACTTTTATTAACCATTTTTCTGATACAACTTGATCTCCAAGATG

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU117262 vs. TrEMBL
Match: A0A0A0M0E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680110 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.5e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -1


Query: 122 HLGDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGESFAE 181
           HLGDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGESFAE
Sbjct: 62  HLGDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGESFAE 120

Query: 182  241
           
Sbjct: 122  120

Query: 242  299
           
Sbjct: 182  120

[Close]

BLAST of CU117262 vs. TrEMBL
Match: A0A0A0M0E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680110 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-10
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = -2


Query: 19  KALQKWTVEFEKADENVPLPQTHLDLFVEMSKAVDAYLF 78
           ++  +WTVEFEKADENVPLPQTHLDLFVEMSKAVDAY F
Sbjct: 116 ESFAEWTVEFEKADENVPLPQTHLDLFVEMSKAVDAYCF 154

Query: 79   136
           
Sbjct: 176  154

HSP 2 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = -1


Query: 122 HLG-DQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGE-SFA 181
           HLG DQVVSEKWLI+  DDAKKCI+YEA+EGD+  YYK+LRA++E V+GRS++IG  SFA
Sbjct: 61  HLGADQVVSEKWLIRAVDDAKKCIIYEAIEGDLQKYYKVLRAKLEVVHGRSSKIGRGSFA 120

Query: 182 E 241
           +
Sbjct: 121 K 121

Query: 242  299
           
Sbjct: 181  121

[Close]

BLAST of CU117262 vs. TrEMBL
Match: A0A0A0LAY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342350 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-05
Identity = 22/33 (66.67%), Postives = 30/33 (90.91%), Query Frame = -2


Query: 25  KWTVEFEKADENVPLPQTHLDLFVEMSKAVDAY 84
           KWT+EFEKA+ENVP P +H+++FV++SK VDAY
Sbjct: 121 KWTIEFEKANENVPSPDSHMEIFVKISKGVDAY 153

Query: 85   124
           
Sbjct: 181  153

HSP 2 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = -1


Query: 140 GDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEI 199
           GD++ +EKW I+V DD KK I+YEAVEGD L  +K+LRA+ E VNG  +++
Sbjct: 63  GDELRAEKWAIRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVNGGLSKV 113

Query: 200  259
           
Sbjct: 123  113

Query: 260  293
           
Sbjct: 183  113

[Close]

BLAST of CU117262 vs. TrEMBL
Match: N0DK19_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-04
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = -2


Query: 25  KWTVEFEKADENVPLPQTHLDLFVEMSKAVDAY 84
           KWTVEFEKA++NV  PQ +L+LFV++SK VDAY
Sbjct: 120 KWTVEFEKANQNVASPQNYLELFVKISKGVDAY 152

Query: 85   124
           
Sbjct: 180  152

HSP 2 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = -1


Query: 140 GDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEI 199
           GD++ +EKW I+V DD KK I+YEAVEGD L  +K+LRA+ E VNG  +++
Sbjct: 63  GDELRAEKWAIRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVNGGLSKV 113

Query: 200  259
           
Sbjct: 123  113

Query: 260  293
           
Sbjct: 183  113

[Close]

BLAST of CU117262 vs. TrEMBL
Match: N0DKL1_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. ovifera GN=MLP-PG1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-04
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = -2


Query: 25  KWTVEFEKADENVPLPQTHLDLFVEMSKAVDAY 84
           KWTVEFEKA++NV  PQ +L+LFV++SK VDAY
Sbjct: 120 KWTVEFEKANQNVASPQNYLELFVKISKGVDAY 152

Query: 85   124
           
Sbjct: 180  152

HSP 2 Score: 62.8 bits (151), Expect = 2.8e-07
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = -1


Query: 137 EKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIG 196
           EKW+I+  DD KK IVYEAVEG+ L  +K+LRA+VEAV+G S ++G
Sbjct: 69  EKWVIRAVDDVKKYIVYEAVEGEALKQFKVLRAKVEAVHGGSTKVG 114

Query: 197  256
           
Sbjct: 129  114

Query: 257  275
           
Sbjct: 189  114

[Close]

BLAST of CU117262 vs. NCBI nr
Match: gi|449449571|ref|XP_004142538.1| (PREDICTED: kirola-like [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -1


Query: 122 HLGDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGESFAE 181
           HLGDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGESFAE
Sbjct: 62  HLGDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGESFAE 120

Query: 182  241
           
Sbjct: 122  120

Query: 242  299
           
Sbjct: 182  120

[Close]

BLAST of CU117262 vs. NCBI nr
Match: gi|659086152|ref|XP_008443791.1| (PREDICTED: kirola-like [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 6.3e-21
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = -1


Query: 122 HLGDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGESFAE 181
           HLGD+VVSEKWLIKV DDA KCI++EAVEGDMLNYYKMLRA++EA NGRSN+IGESF +
Sbjct: 64  HLGDEVVSEKWLIKVVDDATKCIIFEAVEGDMLNYYKMLRAKMEAFNGRSNKIGESFGK 122

Query: 182  241
           
Sbjct: 124  122

Query: 242  299
           
Sbjct: 184  122

[Close]

BLAST of CU117262 vs. NCBI nr
Match: gi|778688605|ref|XP_004149788.2| (PREDICTED: kirola-like [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-15
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = -1


Query: 122 HLG-DQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGE-SFA 181
           HLG DQVVSEKWLI+  DDAKKCI+YEA+EGD+  YYK+LRA++E V+GRS++IG  SFA
Sbjct: 61  HLGADQVVSEKWLIRAVDDAKKCIIYEAIEGDLQKYYKVLRAKLEVVHGRSSKIGRGSFA 120

Query: 182 E 241
           +
Sbjct: 121 K 121

Query: 242  299
           
Sbjct: 181  121

[Close]

BLAST of CU117262 vs. NCBI nr
Match: gi|700202699|gb|KGN57832.1| (hypothetical protein Csa_3G342350 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-15
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = -1


Query: 122 HLG-DQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGE-SFA 181
           HLG DQVVSEKWLI+  DDAKKCI+YEA+EGD+  YYK+LRA++E V+GRS++IG  SFA
Sbjct: 61  HLGADQVVSEKWLIRAVDDAKKCIIYEAIEGDLQKYYKVLRAKLEVVHGRSSKIGRGSFA 120

Query: 182 E 241
           +
Sbjct: 121 K 121

Query: 242  299
           
Sbjct: 181  121

[Close]

BLAST of CU117262 vs. NCBI nr
Match: gi|659114461|ref|XP_008457062.1| (PREDICTED: MLP-like protein 423 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 8.0e-08
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = -1


Query: 122 HLGDQVVSEKWLIKVADDAKKCIVYEAVEGDMLNYYKMLRARVEAVNGRSNEIGESFAE 181
           HLG    + K  +++ DD KK IVYE ++GD+L YYK+ RA++EAVNG  N++G +FA+
Sbjct: 61  HLGSPAAA-KIKMRLVDDVKKSIVYEIMDGDVLKYYKVFRAKLEAVNGGLNKVGGNFAK 118

Query: 182  241
           
Sbjct: 121  118

Query: 242  299
           
Sbjct: 181  118

The following BLAST results are available for this feature:

BLAST of CU117262 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0E1_CUCSA	6.5e-25	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680110 PE=4 SV=1	[more]
A0A0A0M0E1_CUCSA	2.7e-10	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680110 PE=4 SV=1	[more]
A0A0A0LAY7_CUCSA	2.6e-05	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342350 PE=4 SV=1	[more]
N0DK19_CUCPE	2.2e-04	69.70	Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR1 PE=2 SV=1	[more]
N0DKL1_CUCPE	2.2e-04	69.70	Major latex-like protein OS=Cucurbita pepo subsp. ovifera GN=MLP-PG1 PE=2 SV=1	[more]

BLAST of CU117262 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449571\|ref\|XP_004142538.1\|	1.1e-25	100.00	PREDICTED: kirola-like [Cucumis sativus]	[more]
gi\|659086152\|ref\|XP_008443791.1\|	6.3e-21	81.36	PREDICTED: kirola-like [Cucumis melo]	[more]
gi\|778688605\|ref\|XP_004149788.2\|	2.3e-15	68.85	PREDICTED: kirola-like [Cucumis sativus]	[more]
gi\|700202699\|gb\|KGN57832.1\|	2.3e-15	68.85	hypothetical protein Csa_3G342350 [Cucumis sativus]	[more]
gi\|659114461\|ref\|XP_008457062.1\|	8.0e-08	49.15	PREDICTED: MLP-like protein 423 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000916	Bet_v_I/MLP
IPR023393	START-like_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response
GO:0009607	response to biotic stimulus

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G680110	Csa1G680110	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OU6MQ	FKNP3UI02OU6MQ	EST
H0126252	H0126252	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000916	Bet v I/Major latex protein	PFAM	PF00407	Bet_v_1	coord: 11..92 score: 1.8
IPR023393	START-like domain	GENE3D	G3DSA:3.30.530.20		coord: 12..93 score: 7.5
None	No IPR available	PANTHER	PTHR31907	FAMILY NOT NAMED	coord: 13..96 score: 5.4
None	No IPR available	PANTHER	PTHR31907:SF2	SUBFAMILY NOT NAMED	coord: 13..96 score: 5.4
None	No IPR available	unknown	SSF55961	Bet v1-like	coord: 12..92 score: 3.11