CU117225 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU117225
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	COBRA-like protein 10
Location	Chr3 : 4299284 .. 4299487 (-)
Sequence length	203

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAATAGACAACAACAATCCTCTTGGCCGTCTCGATCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTCAAAGCATGAGAGGAGCTTACACTCGTACGAGAGATTTATCTCAATGCGTTTATGGTACCGCTGGCCAATACTATCAAGATTTCGACTTCTCTCAAGTCATGAGTTGCGATAAGCGACCCATAATC

Library


Library category	ESTs
gynoecious flower library	2

Homology

[Close]

BLAST of CU117225 vs. Swiss-Prot
Match: CBL10_ARATH (COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-24
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           IDN+NPLGRLD WNLT+EWMRGEFI +MRGAYT  +D S+C+Y  AGQYY+D DFSQVM+
Sbjct: 251 IDNDNPLGRLDRWNLTFEWMRGEFINTMRGAYTHKKDPSECLYSKAGQYYKDLDFSQVMN 310

Query: 63  CDKRPII 122
           C ++P I
Sbjct: 311 CQRKPAI 317

Query: 123  182
           
Sbjct: 371  317

Query: 183  204
           
Sbjct: 431  317

[Close]

BLAST of CU117225 vs. Swiss-Prot
Match: CBL11_ARATH (COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-22
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           IDN +PLGRLDHWNLTWEWMRGEFI SMRGAY   ++  +C+   AGQ+Y D DFSQV +
Sbjct: 241 IDNTSPLGRLDHWNLTWEWMRGEFIHSMRGAYAAEKNTLECLSSKAGQFYGDLDFSQVAN 300

Query: 63  CDKRPII 122
           C K+PII
Sbjct: 301 CQKKPII 307

Query: 123  182
           
Sbjct: 361  307

Query: 183  204
           
Sbjct: 421  307

[Close]

BLAST of CU117225 vs. Swiss-Prot
Match: COBL9_ARATH (COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.3e-17
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           ++N+NPLGRLDHW L+++WMR EFIQ M+GAY    D ++C++G     Y   DF+ V++
Sbjct: 238 MENHNPLGRLDHWELSFDWMRDEFIQKMQGAYPTVVDATKCIFGPQSLIYTGLDFADVLT 297

Query: 63  CDKRPII 122
           C++RPII
Sbjct: 298 CERRPII 304

Query: 123  182
           
Sbjct: 358  304

Query: 183  204
           
Sbjct: 418  304

[Close]

BLAST of CU117225 vs. Swiss-Prot
Match: COBL7_ARATH (COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-16
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           ++N+NPLGRLD+W L+++WMR EFI +M+GAY    D S CV G   ++YQD DFS V+S
Sbjct: 239 MENHNPLGRLDNWKLSFDWMRDEFIYTMKGAYPSIVDSSDCVDGPQAKHYQDLDFSNVLS 298

Query: 63  CDKRPII 122
           C +RP +
Sbjct: 299 CARRPTV 305

Query: 123  182
           
Sbjct: 359  305

Query: 183  204
           
Sbjct: 419  305

[Close]

BLAST of CU117225 vs. Swiss-Prot
Match: COBL8_ARATH (COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.8e-15
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           I+N+N LGRLD+W+L++ WM+ EF+ S +GAY    D S C+ G   +YY+D DFS VMS
Sbjct: 232 IENHNLLGRLDNWDLSFMWMKDEFLFSTKGAYPSVVDSSDCITGPQAKYYKDLDFSNVMS 291

Query: 63  CDKRPII 122
           C +RP I
Sbjct: 292 CARRPHI 298

Query: 123  182
           
Sbjct: 352  298

Query: 183  204
           
Sbjct: 412  298

[Close]

BLAST of CU117225 vs. TrEMBL
Match: A0A0A0L312_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078790 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.4e-33
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYT TRDLSQCVYGTAGQYYQDFDFSQVMS
Sbjct: 255 IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTHTRDLSQCVYGTAGQYYQDFDFSQVMS 314

Query: 63  CDKRPII 122
           CDKRPII
Sbjct: 315 CDKRPII 321

Query: 123  182
           
Sbjct: 375  321

Query: 183  204
           
Sbjct: 435  321

[Close]

BLAST of CU117225 vs. TrEMBL
Match: A0A0A0L8A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G423810 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-26
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           IDNNNPLGRLDHWNLTWEWMRGEFI +MRGAYT   D S C++G  GQYYQDFDFSQVM+
Sbjct: 249 IDNNNPLGRLDHWNLTWEWMRGEFISTMRGAYTHRTDSSDCIFGPQGQYYQDFDFSQVMN 308

Query: 63  CDKRPII 122
           C+K PII
Sbjct: 309 CEKNPII 315

Query: 123  182
           
Sbjct: 369  315

Query: 183  204
           
Sbjct: 429  315

[Close]

BLAST of CU117225 vs. TrEMBL
Match: A0A059BVY2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03435 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-26
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           +DNN+PLGRLDHWNLTWEWMRGEFI SMRGAYT T+D S+C+YG AGQYY+D DFSQVM+
Sbjct: 221 MDNNHPLGRLDHWNLTWEWMRGEFIYSMRGAYTHTKDPSECIYGVAGQYYKDLDFSQVMN 280

Query: 63  CDKRPII 122
           C K+P I
Sbjct: 281 CHKKPFI 287

Query: 123  182
           
Sbjct: 341  287

Query: 183  204
           
Sbjct: 401  287

[Close]

BLAST of CU117225 vs. TrEMBL
Match: F6H9B0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0177g00160 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-25
Identity = 50/67 (74.63%), Postives = 60/67 (89.55%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           IDN NP+GRLDHWNLTWEWMRGEFI +MRGA+TR +D S+C+YG AGQYY+ FDFS VM+
Sbjct: 239 IDNKNPIGRLDHWNLTWEWMRGEFIYNMRGAFTRKKDSSECIYGEAGQYYKTFDFSAVMN 298

Query: 63  CDKRPII 122
           C+KRP+I
Sbjct: 299 CEKRPVI 305

Query: 123  182
           
Sbjct: 359  305

Query: 183  204
           
Sbjct: 419  305

[Close]

BLAST of CU117225 vs. TrEMBL
Match: B9I0B1_POPTR (COBRA-like protein 10 OS=Populus trichocarpa GN=POPTR_0011s13850g PE=4 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-25
Identity = 48/67 (71.64%), Postives = 60/67 (89.55%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           +DN +PLGRLDHWNLTWEWM GEFI +MRGAYT  RD S+C+YGTAG+YY+DFDFS +M+
Sbjct: 243 MDNIHPLGRLDHWNLTWEWMNGEFISTMRGAYTHKRDFSECIYGTAGKYYKDFDFSTIMN 302

Query: 63  CDKRPII 122
           C+K+P+I
Sbjct: 303 CEKKPVI 309

Query: 123  182
           
Sbjct: 363  309

Query: 183  204
           
Sbjct: 423  309

[Close]

BLAST of CU117225 vs. NCBI nr
Match: gi|449470463|ref|XP_004152936.1| (PREDICTED: COBRA-like protein 10 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-33
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYT TRDLSQCVYGTAGQYYQDFDFSQVMS
Sbjct: 255 IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTHTRDLSQCVYGTAGQYYQDFDFSQVMS 314

Query: 63  CDKRPII 122
           CDKRPII
Sbjct: 315 CDKRPII 321

Query: 123  182
           
Sbjct: 375  321

Query: 183  204
           
Sbjct: 435  321

[Close]

BLAST of CU117225 vs. NCBI nr
Match: gi|659126984|ref|XP_008463461.1| (PREDICTED: COBRA-like protein 10 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-33
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYT TRDLSQCVYGTAGQYYQDFDFSQVMS
Sbjct: 267 IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTHTRDLSQCVYGTAGQYYQDFDFSQVMS 326

Query: 63  CDKRPII 122
           CDKRP+I
Sbjct: 327 CDKRPVI 333

Query: 123  182
           
Sbjct: 387  333

Query: 183  204
           
Sbjct: 447  333

[Close]

BLAST of CU117225 vs. NCBI nr
Match: gi|1009182287|ref|XP_015872629.1| (PREDICTED: COBRA-like protein 10, partial [Ziziphus jujuba])

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-27
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           IDNNNPLGRLDHWNLTWEWMRGEFI +MRGAYT  +D S C+YG AG+YYQD DFSQVM+
Sbjct: 52  IDNNNPLGRLDHWNLTWEWMRGEFINNMRGAYTHKKDPSGCIYGAAGKYYQDLDFSQVMN 111

Query: 63  CDKRPII 122
           C+KRPII
Sbjct: 112 CEKRPII 118

Query: 123  182
           
Sbjct: 172  118

Query: 183  204
           
Sbjct: 232  118

[Close]

BLAST of CU117225 vs. NCBI nr
Match: gi|697104116|ref|XP_009605865.1| (PREDICTED: COBRA-like protein 10 [Nicotiana tomentosiformis])

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-27
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           I NNNPLGRLD WNLTWEWMRGEFI SMRGAYTR +D S CVYG AGQYYQDFDFS+V+S
Sbjct: 232 IQNNNPLGRLDQWNLTWEWMRGEFIYSMRGAYTRKKDYSDCVYGAAGQYYQDFDFSKVLS 291

Query: 63  CDKRPII 122
           C+K+P I
Sbjct: 292 CEKKPTI 298

Query: 123  182
           
Sbjct: 352  298

Query: 183  204
           
Sbjct: 412  298

[Close]

BLAST of CU117225 vs. NCBI nr
Match: gi|778688637|ref|XP_011652799.1| (PREDICTED: COBRA-like protein 10 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-27
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 3


Query: 3   IDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTRTRDLSQCVYGTAGQYYQDFDFSQVMS 62
           IDNNNPLGRLDHWNLTWEWMRGEFI +MRGAYT   D S C++G  GQYYQDFDFSQVM+
Sbjct: 249 IDNNNPLGRLDHWNLTWEWMRGEFISTMRGAYTHRTDSSDCIFGPQGQYYQDFDFSQVMN 308

Query: 63  CDKRPII 122
           C+K PII
Sbjct: 309 CEKNPII 315

Query: 123  182
           
Sbjct: 369  315

Query: 183  204
           
Sbjct: 429  315

The following BLAST results are available for this feature:

BLAST of CU117225 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CBL10_ARATH	3.1e-24	70.15	COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1	[more]
CBL11_ARATH	1.3e-22	67.16	COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2	[more]
COBL9_ARATH	8.3e-17	50.75	COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1	[more]
COBL7_ARATH	1.1e-16	53.73	COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2	[more]
COBL8_ARATH	7.8e-15	52.24	COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1	[more]

BLAST of CU117225 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L312_CUCSA	3.4e-33	98.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078790 PE=4 SV=1	[more]
A0A0A0L8A2_CUCSA	2.3e-26	79.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G423810 PE=4 SV=1	[more]
A0A059BVY2_EUCGR	3.1e-26	77.61	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03435 PE=4 SV=1	[more]
F6H9B0_VITVI	1.5e-25	74.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0177g00160 PE=4 SV=...	[more]
B9I0B1_POPTR	4.4e-25	71.64	COBRA-like protein 10 OS=Populus trichocarpa GN=POPTR_0011s13850g PE=4 SV=2	[more]

BLAST of CU117225 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470463\|ref\|XP_004152936.1\|	1.3e-33	98.51	PREDICTED: COBRA-like protein 10 [Cucumis sativus]	[more]
gi\|659126984\|ref\|XP_008463461.1\|	1.7e-33	97.01	PREDICTED: COBRA-like protein 10 [Cucumis melo]	[more]
gi\|1009182287\|ref\|XP_015872629.1\|	2.3e-27	80.60	PREDICTED: COBRA-like protein 10, partial [Ziziphus jujuba]	[more]
gi\|697104116\|ref\|XP_009605865.1\|	6.8e-27	80.60	PREDICTED: COBRA-like protein 10 [Nicotiana tomentosiformis]	[more]
gi\|778688637\|ref\|XP_011652799.1\|	8.8e-27	79.10	PREDICTED: COBRA-like protein 10 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006918	COBRA_pln

Vocabulary: **Biological Process**
Term	Definition
GO:0010215	cellulose microfibril organization
GO:0016049	cell growth

Vocabulary: **Cellular Component**
Term	Definition
GO:0031225	anchored component of membrane

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016049	cell growth
biological_process	GO:0010215	cellulose microfibril organization
cellular_component	GO:0031225	anchored component of membrane

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G078790	Csa3G078790	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0042971	G0042971	EST
G0168199	G0168199	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006918	COBRA, plant	PRODOM	PD140986		coord: 2..68 score: 4.0
IPR006918	COBRA, plant	PFAM	PF04833	COBRA	coord: 2..68 score: 8.1
None	No IPR available	PANTHER	PTHR31052	FAMILY NOT NAMED	coord: 2..68 score: 7.6
None	No IPR available	PANTHER	PTHR31052:SF2	COBRA-LIKE PROTEIN 10-RELATED	coord: 2..68 score: 7.6