CU116875 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU116875
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 289099 .. 290491 (-)
Sequence length	268

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTCCGAGCATCGTCTTCACTTTGTCCATCTCTAGCAACAAGTCGTTGAAGCTGTGTTTCAGAATCCACCCCATGCAACAATTGTTGGTTTTGTCCATCTGTCCATCTTGGCTTCAAATAGTAAAGGGATATCAAGCACTATAACCTTGTAACCTTTCATCCATAACTTCACTATCTTCCATAAGATTCCAGAGGATATGTATGGAGCTAATAATTGATTTAAAAGTTTCCGCTTTGCAGGATCAGACAAAAACAATTTGGCCCAGTTT

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	1

Homology

[Close]

BLAST of CU116875 vs. Swiss-Prot
Match: COAE_ORYSJ (Dephospho-CoA kinase OS=Oryza sativa subsp. japonica GN=Os01g0360600 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-20
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  SDP KR++LN+LLAP+ISSGI W+I+KLW+KG KVIVLDIPLLFE KMD+WT P I
Sbjct: 71  QIVFSDPEKRQVLNRLLAPHISSGIFWEILKLWIKGCKVIVLDIPLLFETKMDQWTHPVI 130

Query: 130 VAW 189
           V W
Sbjct: 131 VVW 133

Query: 190  249
           
Sbjct: 191  133

Query: 250  259
           
Sbjct: 251  133

[Close]

BLAST of CU116875 vs. Swiss-Prot
Match: COAE_ARATH (Dephospho-CoA kinase OS=Arabidopsis thaliana GN=COAE PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-18
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  S  +KR+LLN+L+APYISSGI W+I+K W  G KVIV+DIPLLFE KMD+WTKP +
Sbjct: 71  QIVFSSDSKRQLLNKLMAPYISSGIFWEILKQWASGAKVIVVDIPLLFEVKMDKWTKPIV 130

Query: 130 VAW 189
           V W
Sbjct: 131 VVW 133

Query: 190  249
           
Sbjct: 191  133

Query: 250  259
           
Sbjct: 251  133

HSP 2 Score: 33.1 bits (74), Expect = 1.9e+00
Identity = 15/22 (68.18%), Postives = 16/22 (72.73%), Query Frame = -3


Query: 3   VDSETQLQRLVARDGQSEDDAR 62
           V  ETQL+RL+ RDG SE+DAR
Sbjct: 134 VSQETQLKRLMERDGLSEEDAR 155

Query: 63   69
           
Sbjct: 194  155

[Close]

BLAST of CU116875 vs. Swiss-Prot
Match: YNP5_CAEEL (Uncharacterized protein T05G5.5 OS=Caenorhabditis elegans GN=T05G5.5 PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-07
Identity = 29/66 (43.94%), Postives = 35/66 (53.03%), Query Frame = -2


Query: 61  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 120
           KL  S+P KRK LN +  P I   +  + + L + G K IV D PLLFE+  D+W   TI
Sbjct: 83  KLIFSNPEKRKALNGITHPAIRWEMFKQFLTLLITGTKYIVFDTPLLFESGYDKWIGTTI 142

Query: 121 VAWGGF 180
           V W  F
Sbjct: 143 VVWCDF 148

Query: 181  240
           
Sbjct: 203  148

Query: 241  259
           
Sbjct: 263  148

[Close]

BLAST of CU116875 vs. Swiss-Prot
Match: YJL1_SCHPO (Uncharacterized protein C14G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC14G10.01 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-06
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = -2


Query: 103 NWAKL---FLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKM 162
           N AKL      D  KR LLN ++ P +   +L ++++ +++GY +++LD+PLLFEAKM
Sbjct: 66  NRAKLGQAVFQDAGKRSLLNSIIHPAVRLEMLKELLRCYVRGYSIVILDVPLLFEAKM 123

Query: 163  222
           
Sbjct: 126  123

Query: 223  268
           
Sbjct: 186  123

[Close]

BLAST of CU116875 vs. TrEMBL
Match: A0A0A0KV42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001520 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-25
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  +DPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI
Sbjct: 260 QIVFADPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 319

Query: 130 VAW 189
           V W
Sbjct: 320 VVW 322

Query: 190  249
           
Sbjct: 380  322

Query: 250  259
           
Sbjct: 440  322

[Close]

BLAST of CU116875 vs. TrEMBL
Match: A0A0A0KV42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001520 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-02
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = -3


Query: 3   RWTDGQNQQLLHGVDSETQLQRLVARDGQSEDDAR 62
           RWT      ++  VDSETQLQRLVARDGQSEDDAR
Sbjct: 313 RWT---KPTIVVWVDSETQLQRLVARDGQSEDDAR 344

Query: 63   108
           
Sbjct: 373  344

HSP 2 Score: 107.5 bits (267), Expect = 8.8e-21
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  SDP KR+LLN+LLAPYISSGI W+I KLWMKG KVIVLDIPLLFEAKMD+WTKP I
Sbjct: 71  QIVFSDPGKRQLLNRLLAPYISSGIFWQIFKLWMKGSKVIVLDIPLLFEAKMDKWTKPII 130

Query: 130 VAW 189
           V W
Sbjct: 131 VVW 133

Query: 190  249
           
Sbjct: 191  133

Query: 250  259
           
Sbjct: 251  133

[Close]

BLAST of CU116875 vs. TrEMBL
Match: W9QWR5_9ROSA (Dephospho-CoA kinase domain-containing protein OS=Morus notabilis GN=L484_009080 PE=3 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 2.9e+00
Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = -3


Query: 3   VDSETQLQRLVARDGQSEDDAR 62
           VD ETQLQRL+ARDG SE+DAR
Sbjct: 134 VDPETQLQRLMARDGSSEEDAR 155

Query: 63   69
           
Sbjct: 194  155

HSP 2 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  S+P KR+LLN+LLAPYISSGI W+++KLWMKG+KVIVLD+PLLFEAKMD+WTKP I
Sbjct: 71  QIVFSNPEKRQLLNRLLAPYISSGIFWEMLKLWMKGFKVIVLDVPLLFEAKMDKWTKPII 130

Query: 130 VAW 189
           V W
Sbjct: 131 VIW 133

Query: 190  249
           
Sbjct: 191  133

Query: 250  259
           
Sbjct: 251  133

[Close]

BLAST of CU116875 vs. TrEMBL
Match: M5VMN9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010823mg PE=3 SV=1)

HSP 1 Score: 31.6 bits (70), Expect = 6.0e+02
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = -3


Query: 3   VDSETQLQRLVARDGQSEDDAR 62
           VD ETQLQRLV RD  SED A+
Sbjct: 134 VDPETQLQRLVLRDRTSEDVAQ 155

Query: 63   69
           
Sbjct: 194  155

HSP 2 Score: 105.5 bits (262), Expect = 3.3e-20
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  SDP KR++LN+LLAP+ISSGILW+I+KLWMKG KVI+LDIPLLFE KMDRWT P I
Sbjct: 71  QMVFSDPVKRQILNRLLAPHISSGILWEIIKLWMKGCKVIILDIPLLFETKMDRWTNPVI 130

Query: 130 VAW 189
           V W
Sbjct: 131 VVW 133

Query: 190  249
           
Sbjct: 191  133

Query: 250  259
           
Sbjct: 251  133

[Close]

BLAST of CU116875 vs. TrEMBL
Match: I1HY32_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_3g06370 PE=3 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 4.6e+02
Identity = 15/35 (42.86%), Postives = 25/35 (71.43%), Query Frame = -3


Query: 3   RWTDGQNQQLLHGVDSETQLQRLVARDGQSEDDAR 62
           RWT   N  ++  VD +TQ++RL++RDG S++ A+
Sbjct: 124 RWT---NPVIVVWVDPQTQIERLMSRDGCSQEQAQ 155

Query: 63   108
           
Sbjct: 184  155

HSP 2 Score: 105.5 bits (262), Expect = 3.3e-20
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  SDP KR+LLN+LLAP+ISSGI W++ KLWMKG+KVIVLD+PLLFEAKMD WTKP I
Sbjct: 71  QIVFSDPGKRQLLNRLLAPFISSGIFWEVFKLWMKGFKVIVLDVPLLFEAKMDGWTKPII 130

Query: 130 VAW 189
           V W
Sbjct: 131 VVW 133

Query: 190  249
           
Sbjct: 191  133

Query: 250  259
           
Sbjct: 251  133

[Close]

BLAST of CU116875 vs. NCBI nr
Match: gi|778689230|ref|XP_011652920.1| (PREDICTED: dephospho-CoA kinase [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  +DPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI
Sbjct: 71  QIVFADPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 130

Query: 130 VAW 189
           V W
Sbjct: 131 VVW 133

Query: 190  249
           
Sbjct: 191  133

Query: 250  259
           
Sbjct: 251  133

[Close]

BLAST of CU116875 vs. NCBI nr
Match: gi|700197626|gb|KGN52784.1| (hypothetical protein Csa_4G001520 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  +DPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI
Sbjct: 260 QIVFADPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 319

Query: 130 VAW 189
           V W
Sbjct: 320 VVW 322

Query: 190  249
           
Sbjct: 380  322

Query: 250  259
           
Sbjct: 440  322

[Close]

BLAST of CU116875 vs. NCBI nr
Match: gi|659108756|ref|XP_008454373.1| (PREDICTED: dephospho-CoA kinase domain-containing protein [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  +DPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI
Sbjct: 71  QIVFADPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 130

Query: 130 VAW 189
           V W
Sbjct: 131 VVW 133

Query: 190  249
           
Sbjct: 191  133

Query: 250  259
           
Sbjct: 251  133

[Close]

BLAST of CU116875 vs. NCBI nr
Match: gi|1009148388|ref|XP_015891911.1| (PREDICTED: dephospho-CoA kinase isoform X3 [Ziziphus jujuba])

HSP 1 Score: 107.8 bits (268), Expect = 9.6e-21
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  SDP KR++LN+LLAPYISSGI W+I KLW+KG+KVIVLDIPLLFEAKMDRWTKP I
Sbjct: 71  QIVFSDPGKRQVLNKLLAPYISSGIFWEIFKLWIKGFKVIVLDIPLLFEAKMDRWTKPII 130

Query: 130 VAW 189
           V W
Sbjct: 131 VVW 133

Query: 190  249
           
Sbjct: 191  133

Query: 250  259
           
Sbjct: 251  133

[Close]

BLAST of CU116875 vs. NCBI nr
Match: gi|1009148386|ref|XP_015891910.1| (PREDICTED: dephospho-CoA kinase isoform X2 [Ziziphus jujuba])

HSP 1 Score: 107.8 bits (268), Expect = 9.6e-21
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = -2


Query: 70  KLFLSDPAKRKLLNQLLAPYISSGILWKIVKLWMKGYKVIVLDIPLLFEAKMDRWTKPTI 129
           ++  SDP KR++LN+LLAPYISSGI W+I KLW+KG+KVIVLDIPLLFEAKMDRWTKP I
Sbjct: 105 QIVFSDPGKRQVLNKLLAPYISSGIFWEIFKLWIKGFKVIVLDIPLLFEAKMDRWTKPII 164

Query: 130 VAW 189
           V W
Sbjct: 165 VVW 167

Query: 190  249
           
Sbjct: 225  167

Query: 250  259
           
Sbjct: 285  167

The following BLAST results are available for this feature:

BLAST of CU116875 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COAE_ORYSJ	2.1e-20	69.84	Dephospho-CoA kinase OS=Oryza sativa subsp. japonica GN=Os01g0360600 PE=2 SV=1	[more]
COAE_ARATH	2.0e-18	63.49	Dephospho-CoA kinase OS=Arabidopsis thaliana GN=COAE PE=2 SV=1	[more]
YNP5_CAEEL	4.6e-07	43.94	Uncharacterized protein T05G5.5 OS=Caenorhabditis elegans GN=T05G5.5 PE=3 SV=2	[more]
YJL1_SCHPO	5.1e-06	41.38	Uncharacterized protein C14G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of CU116875 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV42_CUCSA	2.0e-25	90.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001520 PE=3 SV=1	[more]
A0A0A0KV42_CUCSA	1.4e-02	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001520 PE=3 SV=1	[more]
W9QWR5_9ROSA	2.9e+00	81.82	Dephospho-CoA kinase domain-containing protein OS=Morus notabilis GN=L484_009080...	[more]
M5VMN9_PRUPE	6.0e+02	72.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010823mg PE=3 SV=1	[more]
I1HY32_BRADI	4.6e+02	42.86	Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_3g06370 PE=3 SV=1	[more]

BLAST of CU116875 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778689230\|ref\|XP_011652920.1\|	2.9e-25	90.48	PREDICTED: dephospho-CoA kinase [Cucumis sativus]	[more]
gi\|700197626\|gb\|KGN52784.1\|	2.9e-25	90.48	hypothetical protein Csa_4G001520 [Cucumis sativus]	[more]
gi\|659108756\|ref\|XP_008454373.1\|	2.9e-25	90.48	PREDICTED: dephospho-CoA kinase domain-containing protein [Cucumis melo]	[more]
gi\|1009148388\|ref\|XP_015891911.1\|	9.6e-21	76.19	PREDICTED: dephospho-CoA kinase isoform X3 [Ziziphus jujuba]	[more]
gi\|1009148386\|ref\|XP_015891910.1\|	9.6e-21	76.19	PREDICTED: dephospho-CoA kinase isoform X2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001977	Depp_CoAkinase
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0004140	dephospho-CoA kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015937	coenzyme A biosynthetic process

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015937	coenzyme A biosynthetic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004140	dephospho-CoA kinase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G001520	Csa4G001520	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K40DF	FKNP3UI02K40DF	EST
G0153037	G0153037	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001977	Dephospho-CoA kinase	PFAM	PF01121	CoaE	coord: 5..89 score: 6.1
IPR001977	Dephospho-CoA kinase	PROFILE	PS51219	DPCK	coord: 1..90 score: 18
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 5..89 score: 1.5
None	No IPR available	PANTHER	PTHR10695	DEPHOSPHO-COA KINASE-RELATED	coord: 9..89 score: 2.2