CU116611 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU116611
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 9922395 .. 9923641 (+)
Sequence length	229

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCATATGCATCTCAATAAGTGGTCCAATAACTTCCAAAGTGGGACGAACACTGGACGGTAGTAAGAATACCCTTTCTTGAGATTCTTCAAGATTTAATGAAACAAACAACGTCTTCAAACGTTTGGTCAAACACTTTACAGAAATTCCGCTAATATCAACCGCTTGTCCATCATCAATCATCTTGAGAAGCTGTTTTAAGTCATTCCCAATATCAGGAAAGTCCTTCAG

Library


Library category	ESTs
fruit (8DPP) library	2

Homology

[Close]

BLAST of CU116611 vs. TrEMBL
Match: A0A0A0K7U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G281360 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS
Sbjct: 126 LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 185

Query: 62  VRPTLEVIGPLIEMHM 121
           VRPTLEVIGPLIEMHM
Sbjct: 186 VRPTLEVIGPLIEMHM 201

Query: 122  181
           
Sbjct: 246  201

Query: 182  230
           
Sbjct: 306  201

[Close]

BLAST of CU116611 vs. TrEMBL
Match: A0A0B2Q695_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_011560 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-22
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           +K+FPD+GNDLKQLL+MIDDGQAVDI GIS K L KRLK LF+SLNL+E+ +RVFLL S 
Sbjct: 2   MKEFPDVGNDLKQLLQMIDDGQAVDIKGISEKSLAKRLKKLFLSLNLKENGDRVFLLRSK 61

Query: 62  VRPTLEVIGPLIEMHM 121
            RPTL+V+GPLI+ +M
Sbjct: 62  ARPTLDVVGPLIQSYM 77

Query: 122  181
           
Sbjct: 122  77

Query: 182  230
           
Sbjct: 182  77

[Close]

BLAST of CU116611 vs. TrEMBL
Match: I1LD73_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G216200 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-22
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           +K+FPD+GNDLKQLL+MIDDGQAVDI GIS K L KRLK LF+SLNL+E+ +RVFLL S 
Sbjct: 97  MKEFPDVGNDLKQLLQMIDDGQAVDIKGISEKSLAKRLKKLFLSLNLKENGDRVFLLRSK 156

Query: 62  VRPTLEVIGPLIEMHM 121
            RPTL+V+GPLI+ +M
Sbjct: 157 ARPTLDVVGPLIQSYM 172

Query: 122  181
           
Sbjct: 217  172

Query: 182  230
           
Sbjct: 277  172

[Close]

BLAST of CU116611 vs. TrEMBL
Match: A0A151U623_CAJCA (Uncharacterized protein KIAA1704 family OS=Cajanus cajan GN=KK1_007420 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-20
Identity = 51/76 (67.11%), Postives = 64/76 (84.21%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           +++FP++GNDLKQLL+MIDDGQAVDI GIS + LTK LK LF SL L+E+ +RVFLLPS 
Sbjct: 91  MQEFPNVGNDLKQLLQMIDDGQAVDIKGISERSLTKHLKKLFHSLKLKENGDRVFLLPSK 150

Query: 62  VRPTLEVIGPLIEMHM 121
            RPTL+V+GPLI  +M
Sbjct: 151 ARPTLDVVGPLIHSYM 166

Query: 122  181
           
Sbjct: 211  166

Query: 182  230
           
Sbjct: 271  166

[Close]

BLAST of CU116611 vs. TrEMBL
Match: B9SLF1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686080 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-20
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           LK+FP++G+DLKQLL+MIDDGQAVDI GIS + L K LK LFVSLNL+E+ +RVFLLPS+
Sbjct: 115 LKEFPNVGSDLKQLLEMIDDGQAVDIKGISERSLIKHLKKLFVSLNLKENGDRVFLLPSN 174

Query: 62  VRPTLEVIGPLIEMHM 121
             PTLEV+G LI  H+
Sbjct: 175 HCPTLEVVGHLINSHL 190

Query: 122  181
           
Sbjct: 235  190

Query: 182  230
           
Sbjct: 295  190

[Close]

BLAST of CU116611 vs. NCBI nr
Match: gi|449465354|ref|XP_004150393.1| (PREDICTED: uncharacterized protein LOC101213388 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS
Sbjct: 126 LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 185

Query: 62  VRPTLEVIGPLIEMHM 121
           VRPTLEVIGPLIEMHM
Sbjct: 186 VRPTLEVIGPLIEMHM 201

Query: 122  181
           
Sbjct: 246  201

Query: 182  230
           
Sbjct: 306  201

[Close]

BLAST of CU116611 vs. NCBI nr
Match: gi|700189174|gb|KGN44407.1| (hypothetical protein Csa_7G281360 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS
Sbjct: 126 LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 185

Query: 62  VRPTLEVIGPLIEMHM 121
           VRPTLEVIGPLIEMHM
Sbjct: 186 VRPTLEVIGPLIEMHM 201

Query: 122  181
           
Sbjct: 246  201

Query: 182  230
           
Sbjct: 306  201

[Close]

BLAST of CU116611 vs. NCBI nr
Match: gi|659124015|ref|XP_008461948.1| (PREDICTED: microtubule-associated protein futsch [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-30
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           LKDFPDIGNDLKQLLKMIDDGQAVDISGISVK LTKRLK LF+SLNLEESQERVFLLPSS
Sbjct: 180 LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKSLTKRLKKLFLSLNLEESQERVFLLPSS 239

Query: 62  VRPTLEVIGPLIEMHM 121
           V PTLEVIGPLIEMHM
Sbjct: 240 VHPTLEVIGPLIEMHM 255

Query: 122  181
           
Sbjct: 300  255

Query: 182  230
           
Sbjct: 360  255

[Close]

BLAST of CU116611 vs. NCBI nr
Match: gi|356535705|ref|XP_003536384.1| (PREDICTED: uncharacterized protein LOC100788598 [Glycine max])

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           +K+FPD+GNDLKQLL+MIDDGQAVDI GIS K L KRLK LF+SLNL+E+ +RVFLL S 
Sbjct: 97  MKEFPDVGNDLKQLLQMIDDGQAVDIKGISEKSLAKRLKKLFLSLNLKENGDRVFLLRSK 156

Query: 62  VRPTLEVIGPLIEMHM 121
            RPTL+V+GPLI+ +M
Sbjct: 157 ARPTLDVVGPLIQSYM 172

Query: 122  181
           
Sbjct: 217  172

Query: 182  230
           
Sbjct: 277  172

[Close]

BLAST of CU116611 vs. NCBI nr
Match: gi|734364103|gb|KHN17086.1| (Hypothetical protein glysoja_011560 [Glycine soja])

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = -1


Query: 2   LKDFPDIGNDLKQLLKMIDDGQAVDISGISVKCLTKRLKTLFVSLNLEESQERVFLLPSS 61
           +K+FPD+GNDLKQLL+MIDDGQAVDI GIS K L KRLK LF+SLNL+E+ +RVFLL S 
Sbjct: 2   MKEFPDVGNDLKQLLQMIDDGQAVDIKGISEKSLAKRLKKLFLSLNLKENGDRVFLLRSK 61

Query: 62  VRPTLEVIGPLIEMHM 121
            RPTL+V+GPLI+ +M
Sbjct: 62  ARPTLDVVGPLIQSYM 77

Query: 122  181
           
Sbjct: 122  77

Query: 182  230
           
Sbjct: 182  77

The following BLAST results are available for this feature:

BLAST of CU116611 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7U1_CUCSA	1.0e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G281360 PE=4 SV=1	[more]
A0A0B2Q695_GLYSO	2.3e-22	71.05	Uncharacterized protein OS=Glycine soja GN=glysoja_011560 PE=4 SV=1	[more]
I1LD73_SOYBN	2.3e-22	71.05	Uncharacterized protein OS=Glycine max GN=GLYMA_10G216200 PE=4 SV=1	[more]
A0A151U623_CAJCA	1.3e-20	67.11	Uncharacterized protein KIAA1704 family OS=Cajanus cajan GN=KK1_007420 PE=4 SV=1	[more]
B9SLF1_RICCO	4.9e-20	68.42	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686080 PE=4 SV=1	[more]

BLAST of CU116611 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465354\|ref\|XP_004150393.1\|	2.5e-33	100.00	PREDICTED: uncharacterized protein LOC101213388 [Cucumis sativus]	[more]
gi\|700189174\|gb\|KGN44407.1\|	2.5e-33	100.00	hypothetical protein Csa_7G281360 [Cucumis sativus]	[more]
gi\|659124015\|ref\|XP_008461948.1\|	1.5e-30	94.74	PREDICTED: microtubule-associated protein futsch [Cucumis melo]	[more]
gi\|356535705\|ref\|XP_003536384.1\|	5.7e-22	71.05	PREDICTED: uncharacterized protein LOC100788598 [Glycine max]	[more]
gi\|734364103\|gb\|KHN17086.1\|	5.7e-22	71.05	Hypothetical protein glysoja_011560 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G281360	Csa7G281360	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KWABW	FKNP3UI02KWABW	EST
FKNP3UI02LSN49	FKNP3UI02LSN49	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15606	DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED	coord: 1..76 score: 2.8
None	No IPR available	PANTHER	PTHR15606:SF3	GPALPP MOTIFS-CONTAINING PROTEIN 1	coord: 1..76 score: 2.8