CU116340 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU116340
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 17201847 .. 17202101 (+)
Sequence length255
The following sequences are available for this feature:

transcribed_cluster sequence

CGACACGGAGATGTCACCAAGCTCACCTAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAGTAATAACAATGACAATGATA
BLAST of CU116340 vs. TrEMBL
Match: A0A0A0L723_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G303630 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-12
Identity = 40/64 (62.50%), Postives = 40/64 (62.50%), Query Frame = 3

Query: 30  VNNIPETKDPGEVITSTTVIEPKTXXXXXXXXXXXXXXXXXXXXXXXXIIKFDDLEFPDF 89
           VNNIPETKDPGEVITSTTVIEPKT                        IIKFDDLEFPDF
Sbjct: 156 VNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTSSSSTSPSLSSNSNIIKFDDLEFPDF 215

Query: 90  EWIC 149
           EWIC
Sbjct: 216 EWIC 219

Query: 150 209
           
Sbjct: 276 219

Query: 210 222
           
Sbjct: 336 219

BLAST of CU116340 vs. NCBI nr
Match: gi|449456221|ref|XP_004145848.1| (PREDICTED: protein ODORANT1-like [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 40/64 (62.50%), Postives = 40/64 (62.50%), Query Frame = 3

Query: 30  VNNIPETKDPGEVITSTTVIEPKTXXXXXXXXXXXXXXXXXXXXXXXXIIKFDDLEFPDF 89
           VNNIPETKDPGEVITSTTVIEPKT                        IIKFDDLEFPDF
Sbjct: 156 VNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTSSSSTSPSLSSNSNIIKFDDLEFPDF 215

Query: 90  EWIC 149
           EWIC
Sbjct: 216 EWIC 219

Query: 150 209
           
Sbjct: 276 219

Query: 210 222
           
Sbjct: 336 219

BLAST of CU116340 vs. NCBI nr
Match: gi|659114349|ref|XP_008457024.1| (PREDICTED: protein ODORANT1-like [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 9.8e-07
Identity = 33/63 (52.38%), Postives = 35/63 (55.56%), Query Frame = 3

Query: 36  NIPETKDPGEVITSTTVIEPKT-XXXXXXXXXXXXXXXXXXXXXXXXIIKFDDLEFPDFE 95
           NI ETKDP EVITSTT IEPKT                         +IKFDDLEFPDFE
Sbjct: 156 NIAETKDPAEVITSTTAIEPKTPPLNSCVSSTWSSSTSPSSSSTNSNLIKFDDLEFPDFE 215

Query: 96  WIC 155
           W+C
Sbjct: 216 WVC 218

Query: 156 215
           
Sbjct: 276 218

Query: 216 222
           
Sbjct: 336 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L723_CUCSA3.2e-1262.50Uncharacterized protein OS=Cucumis sativus GN=Csa_3G303630 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449456221|ref|XP_004145848.1|1.3e-1162.50PREDICTED: protein ODORANT1-like [Cucumis sativus][more]
gi|659114349|ref|XP_008457024.1|9.8e-0752.38PREDICTED: protein ODORANT1-like [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G303630Csa3G303630gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0143133H0143133EST
H0162491H0162491EST