CU116293 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU116293
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionF-box protein
LocationChr2 : 1813139 .. 1815861 (+)
Sequence length248
The following sequences are available for this feature:

transcribed_cluster sequence

CGGACCGGGGAACCATGGATTACGCCAAAAATTCTCCCACTTCGCCTTCTGTTTCTGCAAGCAATCGGCTATCAGGTAACACTGGAAATTTACACTCATTGGAATGCTTCCCCAGTCATAGAGGGAAGAGAATGGTTAGCGACAGTATTCATTCAGCTTTGGCATGTGATGACATCCTCACCGAAATCCTCCTTCGTTTGCCAGAGAAATCTATTTTCAAACTTATTCTCGTGTCCAAAAGATGGCTA
Library categoryESTs
fruit (8DPP) library2
BLAST of CU116293 vs. TrEMBL
Match: A0A0A0LJ78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010130 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-33
Identity = 78/93 (83.87%), Postives = 78/93 (83.87%), Query Frame = 3

Query: 15  MDYAKNSPTSPSVSASNRLS---------------GNTGNLHSLECFPSHRGKRMVSDSI 74
           MDYAKNSPTSPSVSASNRLS               GNTGNLHSLECFPSHRGKRMVSDSI
Sbjct: 1   MDYAKNSPTSPSVSASNRLSEGFWFVVEEYRWVLIGNTGNLHSLECFPSHRGKRMVSDSI 60

Query: 75  HSALACDDILTEILLRLPEKSIFKLILVSKRWL 134
           HSALACDDILTEILLRLPEKSIFKLILVSKRWL
Sbjct: 61  HSALACDDILTEILLRLPEKSIFKLILVSKRWL 93

Query: 135 194
           
Sbjct: 121 93

Query: 195 249
           
Sbjct: 181 93

BLAST of CU116293 vs. NCBI nr
Match: gi|778666410|ref|XP_004139251.2| (PREDICTED: F-box protein At5g03970 isoform X1 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 4.8e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3

Query: 15  MDYAKNSPTSPSVSASNRLSGNTGNLHSLECFPSHRGKRMVSDSIHSALACDDILTEILL 74
           MDYAKNSPTSPSVSASNRLSGNTGNLHSLECFPSHRGKRMVSDSIHSALACDDILTEILL
Sbjct: 1   MDYAKNSPTSPSVSASNRLSGNTGNLHSLECFPSHRGKRMVSDSIHSALACDDILTEILL 60

Query: 75  RLPEKSIFKLILVSKRWL 134
           RLPEKSIFKLILVSKRWL
Sbjct: 61  RLPEKSIFKLILVSKRWL 78

Query: 135 194
           
Sbjct: 121 78

Query: 195 249
           
Sbjct: 181 78

BLAST of CU116293 vs. NCBI nr
Match: gi|700205658|gb|KGN60777.1| (hypothetical protein Csa_2G010130 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 5.0e-32
Identity = 78/93 (83.87%), Postives = 78/93 (83.87%), Query Frame = 3

Query: 15  MDYAKNSPTSPSVSASNRLS---------------GNTGNLHSLECFPSHRGKRMVSDSI 74
           MDYAKNSPTSPSVSASNRLS               GNTGNLHSLECFPSHRGKRMVSDSI
Sbjct: 1   MDYAKNSPTSPSVSASNRLSEGFWFVVEEYRWVLIGNTGNLHSLECFPSHRGKRMVSDSI 60

Query: 75  HSALACDDILTEILLRLPEKSIFKLILVSKRWL 134
           HSALACDDILTEILLRLPEKSIFKLILVSKRWL
Sbjct: 61  HSALACDDILTEILLRLPEKSIFKLILVSKRWL 93

Query: 135 194
           
Sbjct: 121 93

Query: 195 249
           
Sbjct: 181 93

BLAST of CU116293 vs. NCBI nr
Match: gi|659070719|ref|XP_008456330.1| (PREDICTED: F-box protein At5g03970 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-28
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = 3

Query: 15  MDYAKNSPTSPSVSASNRLSGNTGNLHSLECFPSHRGKRMVSDSIHSALACDDILTEILL 74
           MD AKNSP + S SASNR SGNTG+ HSLE FPSHRGKRMVSDSIHSALACDDILTEILL
Sbjct: 1   MDNAKNSPRAASASASNRPSGNTGSSHSLESFPSHRGKRMVSDSIHSALACDDILTEILL 60

Query: 75  RLPEKSIFKLILVSKRWL 134
           RLPEKSIFKLILVSKRWL
Sbjct: 61  RLPEKSIFKLILVSKRWL 78

Query: 135 194
           
Sbjct: 121 78

Query: 195 249
           
Sbjct: 181 78

BLAST of CU116293 vs. NCBI nr
Match: gi|778666414|ref|XP_011648736.1| (PREDICTED: F-box protein At5g03970 isoform X2 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3

Query: 132 MVSDSIHSALACDDILTEILLRLPEKSIFKLILVSKRWL 191
           MVSDSIHSALACDDILTEILLRLPEKSIFKLILVSKRWL
Sbjct: 1   MVSDSIHSALACDDILTEILLRLPEKSIFKLILVSKRWL 39

Query: 192 249
           
Sbjct: 61  39

BLAST of CU116293 vs. NCBI nr
Match: gi|1009117476|ref|XP_015875340.1| (PREDICTED: F-box protein At5g03970 [Ziziphus jujuba])

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-09
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 3

Query: 126 KRMVSDSIHSALACDDILTEILLRLPEKSIFKLILVSKRWL 185
           KRM  D +H+AL CDDIL EILLRLPEKS+F+LILVSKRWL
Sbjct: 4   KRMKEDIVHAALTCDDILQEILLRLPEKSVFQLILVSKRWL 44

Query: 186 245
           
Sbjct: 64  44

Query: 246 249
           
Sbjct: 124 44

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LJ78_CUCSA3.2e-3383.87Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010130 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778666410|ref|XP_004139251.2|4.8e-35100.00PREDICTED: F-box protein At5g03970 isoform X1 [Cucumis sativus][more]
gi|700205658|gb|KGN60777.1|5.0e-3283.87hypothetical protein Csa_2G010130 [Cucumis sativus][more]
gi|659070719|ref|XP_008456330.1|2.6e-2888.46PREDICTED: F-box protein At5g03970 [Cucumis melo][more]
gi|778666414|ref|XP_011648736.1|1.3e-11100.00PREDICTED: F-box protein At5g03970 isoform X2 [Cucumis sativus][more]
gi|1009117476|ref|XP_015875340.1|7.8e-0978.05PREDICTED: F-box protein At5g03970 [Ziziphus jujuba][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa2G010130Csa2G010130gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LVW70FKNP3UI02LVW70EST
FKNP3UI02NJB9JFKNP3UI02NJB9JEST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 52..77
score: 3.
IPR001810F-box domainunknownSSF81383F-box domaincoord: 52..77
score: 7.9