CU116225 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU116225
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8357755 .. 8357993 (+)
Sequence length239
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AGCATGCGCCACCGAAACCAGCGAGAGAGACGATCATGATGGCAACACCGATGCTGATGAGGGGCCATTGGAGGAATTTGAGACAATCGGTGGTGTTGGCGCGGCTGCTCAGCCATACGCCGCCGCCGATGATGGGGAGGGAAAGGAGGAAGGTTATGAAGTTTAGAAGGCCGATTAAGTGGTTGCTGGCTCTCATGCTGGTGATATGTTCCTTGTGTTTTCTATTGTTTTTTTGGTTC
Homology
[Close]
BLAST of CU116225 vs. Swiss-Prot
Match: TET3_ARATH (Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-26
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MR SNHLIGL+NF+TFLLS+PI+GGG+WLSSRAN+TDCL+FLQWPLI IG++IM+VSLAG
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 62  FGGAC 121
           F GAC
Sbjct: 61  FAGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

[Close]
BLAST of CU116225 vs. Swiss-Prot
Match: TET4_ARATH (Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 47/65 (72.31%), Postives = 58/65 (89.23%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MR+ ++LIGL+NF TFLLS+PI+GGG+WLSSRAN+TDCL+FLQWPLI IG++IM++SLAG
Sbjct: 1   MRSRSNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAG 60

Query: 62  FGGAC 121
             GAC
Sbjct: 61  IAGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

[Close]
BLAST of CU116225 vs. Swiss-Prot
Match: TET8_ARATH (Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-14
Identity = 33/64 (51.56%), Postives = 50/64 (78.12%), Query Frame = -2 

Query: 2   RASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAGF 61
           R SN+L+G+LNF+ FLLS+PI+ GG+WLS +  +T+C +FL  P+I++GV +M+V++AG 
Sbjct: 3   RCSNNLVGILNFLVFLLSIPILAGGIWLSQK-GSTECERFLDKPVIALGVFLMVVAIAGL 62

Query: 62  GGAC 121
            G+C
Sbjct: 63  IGSC 65

Query: 122  181
           
Sbjct: 123  65

Query: 182  194
           
Sbjct: 183  65

[Close]
BLAST of CU116225 vs. Swiss-Prot
Match: TET9_ARATH (Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-13
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           +R SN L+G+LNF  FLLS+PI+  G+WLS +A TT C +FL  P+I++GV +MI+++AG
Sbjct: 2   VRFSNSLVGILNFFVFLLSVPILSTGIWLSLKA-TTQCERFLDKPMIALGVFLMIIAIAG 61

Query: 62  FGGAC 121
             G+C
Sbjct: 62  VVGSC 65

Query: 122  181
           
Sbjct: 122  65

Query: 182  197
           
Sbjct: 182  65

[Close]
BLAST of CU116225 vs. Swiss-Prot
Match: TET7_ARATH (Tetraspanin-7 OS=Arabidopsis thaliana GN=TET7 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.6e-13
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           ++ SN+L+G+LNF TFLLS+PI+  G+WL   A  T+C +FL  P++ +G+ +M VS+AG
Sbjct: 2   VQCSNNLLGILNFFTFLLSIPILSAGIWLGKNA-ATECERFLDKPMVVLGIFLMFVSIAG 61

Query: 62  FGGAC 121
             GAC
Sbjct: 62  LVGAC 65

Query: 122  181
           
Sbjct: 122  65

Query: 182  197
           
Sbjct: 182  65

[Close]
BLAST of CU116225 vs. TrEMBL
Match: A0A0A0LS61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G089490 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG
Sbjct: 1   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 60

Query: 62  FGGAC 121
           FGGAC
Sbjct: 61  FGGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

[Close]
BLAST of CU116225 vs. TrEMBL
Match: B9SK16_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1398810 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-25
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MR+SNHLIGLLNFITFLLS+PI+GGG+WLSSRAN TDCLKFLQWPLI IGV+IM+VSLAG
Sbjct: 1   MRSSNHLIGLLNFITFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAG 60

Query: 62  FGGAC 121
           F GAC
Sbjct: 61  FAGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

[Close]
BLAST of CU116225 vs. TrEMBL
Match: A0A164ZAA7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018839 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MRASNHLIGLLNF TFLLS+PI+GGG+WLSSRAN TDCLKFLQWPLI IGVAIM+VSLAG
Sbjct: 1   MRASNHLIGLLNFTTFLLSVPILGGGIWLSSRANNTDCLKFLQWPLIVIGVAIMVVSLAG 60

Query: 62  FGGAC 121
           F GAC
Sbjct: 61  FAGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

[Close]
BLAST of CU116225 vs. TrEMBL
Match: A0A0B2P8N9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024681 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-25
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MR SNHLIGLLNF+TFLLS+PI+GGG+WLSSRAN TDCLKFLQWPLI IGV+IM+VSLAG
Sbjct: 1   MRTSNHLIGLLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAG 60

Query: 62  FGGAC 121
           F GAC
Sbjct: 61  FAGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

[Close]
BLAST of CU116225 vs. TrEMBL
Match: F6GTX6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03390 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-25
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MR SNHLIGLLNF+TFLLS+PI+GGG+WLSSRAN TDC+KFLQWPLI IGVAIM++SLAG
Sbjct: 1   MRTSNHLIGLLNFLTFLLSIPILGGGIWLSSRANNTDCMKFLQWPLIIIGVAIMVISLAG 60

Query: 62  FGGAC 121
           F GAC
Sbjct: 61  FAGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

[Close]
BLAST of CU116225 vs. NCBI nr
Match: gi|449459074|ref|XP_004147271.1| (PREDICTED: tetraspanin-3-like [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 4.2e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG
Sbjct: 1   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 60

Query: 62  FGGAC 121
           FGGAC
Sbjct: 61  FGGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

[Close]
BLAST of CU116225 vs. NCBI nr
Match: gi|659072111|ref|XP_008463449.1| (PREDICTED: tetraspanin-3-like [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLI IGVAIM+VSLAG
Sbjct: 1   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLIGIGVAIMVVSLAG 60

Query: 62  FGGAC 121
           FGGAC
Sbjct: 61  FGGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

[Close]
BLAST of CU116225 vs. NCBI nr
Match: gi|694439391|ref|XP_009346587.1| (PREDICTED: tetraspanin-3-like [Pyrus x bretschneideri])

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-25
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = -2 

Query: 2   QKNNRKHKEHITSMRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLI 61
           +KN  K K   T +R SNHLIGLLNF+TFLLS+PI+GGG+WLSSRAN TDCLKFLQWPLI
Sbjct: 98  KKNPEKKKRDSTMVRTSNHLIGLLNFVTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLI 157

Query: 62  SIGVAIMIVSLAGFGGAC 121
            IG AIM+VSLAGF GAC
Sbjct: 158 VIGAAIMVVSLAGFAGAC 175

Query: 122  181
           
Sbjct: 218  175

Query: 182  236
           
Sbjct: 278  175

[Close]
BLAST of CU116225 vs. NCBI nr
Match: gi|658055464|ref|XP_008363477.1| (PREDICTED: tetraspanin-3-like [Malus domestica])

HSP 1 Score: 121.7 bits (304), Expect = 5.7e-25
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = -2 

Query: 2   RKHKEHITSMRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGV 61
           R+ K     MR SNHLIGLLNFITFLLS+PI+GGG+WLSSRAN TDCLKFLQWPLI IGV
Sbjct: 62  RRKKRLKKIMRTSNHLIGLLNFITFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIVIGV 121

Query: 62  AIMIVSLAGFGGAC 121
           AIM+VSLAGF GAC
Sbjct: 122 AIMVVSLAGFAGAC 135

Query: 122  181
           
Sbjct: 182  135

Query: 182  224
           
Sbjct: 242  135

[Close]
BLAST of CU116225 vs. NCBI nr
Match: gi|255570765|ref|XP_002526335.1| (PREDICTED: tetraspanin-3 [Ricinus communis])

HSP 1 Score: 120.9 bits (302), Expect = 9.8e-25
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = -2 

Query: 2   MRASNHLIGLLNFITFLLSLPIIGGGVWLSSRANTTDCLKFLQWPLISIGVAIMIVSLAG 61
           MR+SNHLIGLLNFITFLLS+PI+GGG+WLSSRAN TDCLKFLQWPLI IGV+IM+VSLAG
Sbjct: 1   MRSSNHLIGLLNFITFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIVIGVSIMVVSLAG 60

Query: 62  FGGAC 121
           F GAC
Sbjct: 61  FAGAC 65

Query: 122  181
           
Sbjct: 121  65

Query: 182  197
           
Sbjct: 181  65

The following BLAST results are available for this feature:
BLAST of CU116225 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TET3_ARATH2.3e-2680.00Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1[more]
TET4_ARATH1.4e-2372.31Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1[more]
TET8_ARATH4.5e-1451.56Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1[more]
TET9_ARATH5.0e-1352.31Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1[more]
TET7_ARATH6.6e-1349.23Tetraspanin-7 OS=Arabidopsis thaliana GN=TET7 PE=2 SV=1[more]
BLAST of CU116225 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS61_CUCSA1.0e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G089490 PE=4 SV=1[more]
B9SK16_RICCO2.3e-2586.15Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1398810 PE=3 SV=1[more]
A0A164ZAA7_DAUCA2.3e-2587.69Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018839 PE=4 SV=1[more]
A0A0B2P8N9_GLYSO5.2e-2584.62Uncharacterized protein OS=Glycine soja GN=glysoja_024681 PE=3 SV=1[more]
F6GTX6_VITVI5.2e-2583.08Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03390 PE=3 SV=... [more]
BLAST of CU116225 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459074|ref|XP_004147271.1|4.2e-28100.00PREDICTED: tetraspanin-3-like [Cucumis sativus][more]
gi|659072111|ref|XP_008463449.1|1.6e-2796.92PREDICTED: tetraspanin-3-like [Cucumis melo][more]
gi|694439391|ref|XP_009346587.1|1.5e-2575.64PREDICTED: tetraspanin-3-like [Pyrus x bretschneideri][more]
gi|658055464|ref|XP_008363477.1|5.7e-2579.73PREDICTED: tetraspanin-3-like [Malus domestica][more]
gi|255570765|ref|XP_002526335.1|9.8e-2586.15PREDICTED: tetraspanin-3 [Ricinus communis][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G089490Csa1G089490gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02L3U92FKNP3UI02L3U92EST
FKNP3UI02N6OM8FKNP3UI02N6OM8EST
csa01-3ms4-g03csa01-3ms4-g03EST