CU115931 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU115931
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Disease resistance-responsive (Dirigent-like protein) family protein
Location	Chr4 : 10958234 .. 10958627 (+)
Sequence length	403

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCTACTGCACAGCATGAAATTTGGTACTTTTGATGGCTATGAACTTTGCGTTTACTTACGGAAAATACAAGGGGAGCTCCATCACCATTTTGGGTCGGAACCCTATTCTGAACCAAGTACGAGAGATGCCAGTGGTGGGAGGAACTGGACGGTTCCGATTTGCTAAAGGTCATGCGCTGGCTAAGACTCAATATTTCAACGCTACTACATTGGATGCTGTTGTTGAATATGATATTTATGTATTGCATTATTATTGATAGTCCATTTTTAAATTAAACTTCTCTCCACGTGTTTTTCTTTATTTCTATGTTTTGTATTATTTCCTCTTATCTTTCCCAAATCTCAATAATGTTAGTTTTCATGTGATTGTTTTTTTATAATATATGATTCTTTTTTTCTAGTT

Library


Library category	ESTs
gynoecious flower library	1
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU115931 vs. Swiss-Prot
Match: DIR20_ARATH (Dirigent protein 20 OS=Arabidopsis thaliana GN=DIR20 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-21
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 3


Query: 21  LVLLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFN 80
           L  LMAMNFAF  GKY GS+ITILGRN  L++VREMP+VGG+G FRFA+G+  A+T++ N
Sbjct: 111 LGFLMAMNFAFKTGKYNGSTITILGRNTALSEVREMPIVGGSGLFRFARGYVEARTKWIN 170

Query: 81  ATTLDAVVEYDIYVLHY 140
               DA VEY  YVLHY
Sbjct: 171 LKNGDATVEYSCYVLHY 187

Query: 141  200
           
Sbjct: 231  187

Query: 201  252
           
Sbjct: 291  187

[Close]

BLAST of CU115931 vs. Swiss-Prot
Match: DIR21_ARATH (Dirigent protein 21 OS=Arabidopsis thaliana GN=DIR21 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 3


Query: 21  LVLLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFN 80
           L LLMA N  FT GK+  S++ + GRNP+L++VREMP++GGTG FRF +G+ALAKT  FN
Sbjct: 114 LGLLMAFNLVFTKGKFSDSTVAMYGRNPVLSKVREMPIIGGTGAFRFGRGYALAKTLVFN 173

Query: 81  ATTLDAVVEYDIYVLH 140
            T+ DAVVEY++Y+ H
Sbjct: 174 ITSGDAVVEYNVYIWH 189

Query: 141  200
           
Sbjct: 234  189

Query: 201  249
           
Sbjct: 294  189

[Close]

BLAST of CU115931 vs. Swiss-Prot
Match: DIR7_ARATH (Dirigent protein 7 OS=Arabidopsis thaliana GN=DIR7 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-20
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 3


Query: 30  LMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNATT 89
           LM MNFAF  GKY GSSI ILGRN +L +VREMPV+GG+G FRFA+G+  A+T +F+  +
Sbjct: 113 LMVMNFAFKTGKYNGSSIAILGRNAVLTKVREMPVIGGSGLFRFARGYVEARTMWFDQKS 172

Query: 90  LDAVVEYDIYVLHY 149
            DA VEY  YVLHY
Sbjct: 173 GDATVEYSCYVLHY 186

Query: 150  209
           
Sbjct: 233  186

Query: 210  252
           
Sbjct: 293  186

[Close]

BLAST of CU115931 vs. Swiss-Prot
Match: DIR19_ARATH (Dirigent protein 19 OS=Arabidopsis thaliana GN=DIR19 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-20
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 3


Query: 27  LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 86
           LLMAMNFA   GKY GS+IT+LGRN + ++VREMPV+GG+G FRFA+G+  A T  FN  
Sbjct: 111 LLMAMNFAILDGKYNGSTITVLGRNSVFDKVREMPVIGGSGLFRFARGYVQASTHEFNLK 170

Query: 87  TLDAVVEYDIYVLHY 146
           T +A+VEY+ Y+LHY
Sbjct: 171 TGNAIVEYNCYLLHY 185

Query: 147  206
           
Sbjct: 231  185

Query: 207  252
           
Sbjct: 291  185

[Close]

BLAST of CU115931 vs. Swiss-Prot
Match: DIR3_ARATH (Dirigent protein 3 OS=Arabidopsis thaliana GN=DIR3 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-20
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 3


Query: 27  LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 86
           LLMAMN AF  GKY GS+ITILGRN ++++VREMPVVGG+G FRFA+G+  A+T+ F+  
Sbjct: 117 LLMAMNLAFKTGKYNGSTITILGRNTVMSKVREMPVVGGSGMFRFARGYVEARTKLFDMK 176

Query: 87  TLDAVVEYDIYVLHY 146
           T DA VE + Y+LHY
Sbjct: 177 TGDATVESNCYILHY 191

Query: 147  206
           
Sbjct: 237  191

Query: 207  252
           
Sbjct: 297  191

[Close]

BLAST of CU115931 vs. TrEMBL
Match: A0A0A0KX42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280650 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3


Query: 27  LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 86
           LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT
Sbjct: 112 LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 171

Query: 87  TLDAVVEYDIYVLHYY 146
           TLDAVVEYDIYVLHYY
Sbjct: 172 TLDAVVEYDIYVLHYY 187

Query: 147  206
           
Sbjct: 232  187

Query: 207  255
           
Sbjct: 292  187

[Close]

BLAST of CU115931 vs. TrEMBL
Match: A0A0A0LUT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015830 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.2e-23
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 3


Query: 27  LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 86
           LLMAMNFAFT+GKYKGSS+T++GRN I + VREMPVVGG+G+FRF  G+ALAKT   +  
Sbjct: 116 LLMAMNFAFTHGKYKGSSLTVIGRNHISDAVREMPVVGGSGKFRFGSGYALAKTHCLDPV 175

Query: 87  TLDAVVEYDIYVLHY 146
           T DAVVEY++YVLHY
Sbjct: 176 TFDAVVEYNVYVLHY 190

Query: 147  206
           
Sbjct: 236  190

Query: 207  252
           
Sbjct: 296  190

[Close]

BLAST of CU115931 vs. TrEMBL
Match: U5CLY9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03766p00005550 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = 3


Query: 18  NLVLLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYF 77
           +L LLMAMNFAF  GKYKGS++TILGRNP+LN VREMP++GG+G FR A+G+ LAKT  F
Sbjct: 122 DLGLLMAMNFAFVEGKYKGSTLTILGRNPVLNPVREMPIIGGSGLFRLARGYVLAKTHLF 181

Query: 78  NATTLDAVVEYDIYVLHY 137
           +  T DAVVEY++YV HY
Sbjct: 182 DLKTGDAVVEYNVYVTHY 199

Query: 138  197
           
Sbjct: 242  199

Query: 198  252
           
Sbjct: 302  199

[Close]

BLAST of CU115931 vs. TrEMBL
Match: A0A151T970_CAJCA (Disease resistance response protein 206 family OS=Cajanus cajan GN=KK1_018189 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 3


Query: 21  LVLLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFN 80
           + LLMAMNFA T GKY GS+ITILGRNPI N+ REMPV+GG+G FRFA+G+A  +T +F+
Sbjct: 108 VTLLMAMNFAITEGKYNGSTITILGRNPIFNKEREMPVIGGSGLFRFARGYAKLRTHWFS 167

Query: 81  ATTLDAVVEYDIYVLHY 140
            TT DA+VEY++YVLHY
Sbjct: 168 PTTRDAIVEYNVYVLHY 184

Query: 141  200
           
Sbjct: 228  184

Query: 201  252
           
Sbjct: 288  184

[Close]

BLAST of CU115931 vs. TrEMBL
Match: V7B2Z5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G091600g PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-22
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 3


Query: 21  LVLLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFN 80
           + LLMAMNFA T GKY GSSITILGRNP+ N+ REMPV+GG+G FRFA+G+A  +T +F+
Sbjct: 112 VTLLMAMNFAITEGKYNGSSITILGRNPVFNKKREMPVIGGSGLFRFARGYAQLRTHWFS 171

Query: 81  ATTLDAVVEYDIYVLHY 140
            +T DA+VEY +YVLHY
Sbjct: 172 PSTRDAIVEYTVYVLHY 188

Query: 141  200
           
Sbjct: 232  188

Query: 201  252
           
Sbjct: 292  188

[Close]

BLAST of CU115931 vs. NCBI nr
Match: gi|778693014|ref|XP_011653564.1| (PREDICTED: dirigent protein 22-like [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3


Query: 27  LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 86
           LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT
Sbjct: 112 LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 171

Query: 87  TLDAVVEYDIYVLHYY 146
           TLDAVVEYDIYVLHYY
Sbjct: 172 TLDAVVEYDIYVLHYY 187

Query: 147  206
           
Sbjct: 232  187

Query: 207  255
           
Sbjct: 292  187

[Close]

BLAST of CU115931 vs. NCBI nr
Match: gi|659097739|ref|XP_008449786.1| (PREDICTED: dirigent protein 22-like [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 3.0e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3


Query: 27  LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 86
           LLMAMNFAFTYGKYKGSSITILGRNPI+N VREMPVVGGTGRFRFA+GHALAKTQYFNAT
Sbjct: 114 LLMAMNFAFTYGKYKGSSITILGRNPIVNHVREMPVVGGTGRFRFARGHALAKTQYFNAT 173

Query: 87  TLDAVVEYDIYVLHYY 146
           TLDA+VEYDIYVLHYY
Sbjct: 174 TLDAIVEYDIYVLHYY 189

Query: 147  206
           
Sbjct: 234  189

Query: 207  255
           
Sbjct: 294  189

[Close]

BLAST of CU115931 vs. NCBI nr
Match: gi|659106501|ref|XP_008453355.1| (PREDICTED: dirigent protein 22-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 5.7e-25
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 3


Query: 27  LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 86
           LLMAMNFAFT+GKYKGSS T+LGRNPI + VREMPVVGG+G+FRF  G+ALAKT Y +  
Sbjct: 116 LLMAMNFAFTHGKYKGSSFTVLGRNPISDGVREMPVVGGSGKFRFGSGYALAKTHYLDPV 175

Query: 87  TLDAVVEYDIYVLHY 146
           T DAVVEY++YVLHY
Sbjct: 176 TFDAVVEYNVYVLHY 190

Query: 147  206
           
Sbjct: 236  190

Query: 207  252
           
Sbjct: 296  190

[Close]

BLAST of CU115931 vs. NCBI nr
Match: gi|1009124088|ref|XP_015878883.1| (PREDICTED: dirigent protein 22-like [Ziziphus jujuba])

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 3


Query: 27  LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 86
           LLMAMNFAFT GKY GS+ITILGRNP+ N+VREMPV+GG+G FRFA+G+A A T  F   
Sbjct: 133 LLMAMNFAFTQGKYNGSTITILGRNPVFNKVREMPVIGGSGLFRFARGYAQASTHKFTPA 192

Query: 87  TLDAVVEYDIYVLHY 146
           T DA+VEY+IYVLHY
Sbjct: 193 TGDAIVEYNIYVLHY 207

Query: 147  206
           
Sbjct: 253  207

Query: 207  252
           
Sbjct: 313  207

[Close]

BLAST of CU115931 vs. NCBI nr
Match: gi|449441137|ref|XP_004138340.1| (PREDICTED: dirigent protein 22 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 5.3e-23
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 3


Query: 27  LLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYFNAT 86
           LLMAMNFAFT+GKYKGSS+T++GRN I + VREMPVVGG+G+FRF  G+ALAKT   +  
Sbjct: 116 LLMAMNFAFTHGKYKGSSLTVIGRNHISDAVREMPVVGGSGKFRFGSGYALAKTHCLDPV 175

Query: 87  TLDAVVEYDIYVLHY 146
           T DAVVEY++YVLHY
Sbjct: 176 TFDAVVEYNVYVLHY 190

Query: 147  206
           
Sbjct: 236  190

Query: 207  252
           
Sbjct: 296  190

The following BLAST results are available for this feature:

BLAST of CU115931 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DIR20_ARATH	4.9e-21	63.64	Dirigent protein 20 OS=Arabidopsis thaliana GN=DIR20 PE=2 SV=1	[more]
DIR21_ARATH	1.1e-20	59.21	Dirigent protein 21 OS=Arabidopsis thaliana GN=DIR21 PE=3 SV=1	[more]
DIR7_ARATH	1.4e-20	63.51	Dirigent protein 7 OS=Arabidopsis thaliana GN=DIR7 PE=2 SV=1	[more]
DIR19_ARATH	1.9e-20	61.33	Dirigent protein 19 OS=Arabidopsis thaliana GN=DIR19 PE=2 SV=1	[more]
DIR3_ARATH	2.5e-20	62.67	Dirigent protein 3 OS=Arabidopsis thaliana GN=DIR3 PE=3 SV=1	[more]

BLAST of CU115931 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX42_CUCSA	1.4e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280650 PE=4 SV=1	[more]
A0A0A0LUT3_CUCSA	8.2e-23	70.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015830 PE=4 SV=1	[more]
U5CLY9_AMBTC	1.1e-22	67.95	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03766p00005550 PE=4 SV=...	[more]
A0A151T970_CAJCA	1.1e-22	67.53	Disease resistance response protein 206 family OS=Cajanus cajan GN=KK1_018189 PE...	[more]
V7B2Z5_PHAVU	3.1e-22	66.23	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G091600g PE=4 SV=1	[more]

BLAST of CU115931 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778693014\|ref\|XP_011653564.1\|	1.2e-35	100.00	PREDICTED: dirigent protein 22-like [Cucumis sativus]	[more]
gi\|659097739\|ref\|XP_008449786.1\|	3.0e-34	94.74	PREDICTED: dirigent protein 22-like [Cucumis melo]	[more]
gi\|659106501\|ref\|XP_008453355.1\|	5.7e-25	74.67	PREDICTED: dirigent protein 22-like [Cucumis melo]	[more]
gi\|1009124088\|ref\|XP_015878883.1\|	3.1e-23	72.00	PREDICTED: dirigent protein 22-like [Ziziphus jujuba]	[more]
gi\|449441137\|ref\|XP_004138340.1\|	5.3e-23	70.67	PREDICTED: dirigent protein 22 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004265	Dirigent

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G280650	Csa4G280650	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0083945	G0083945	EST
H0073644	H0073644	EST
H0133054	H0133054	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004265	Plant disease resistance response protein	PFAM	PF03018	Dirigent	coord: 1..70 score: 1.3
None	No IPR available	PANTHER	PTHR21495	NUCLEOPORIN-RELATED	coord: 1..73 score: 3.9
None	No IPR available	PANTHER	PTHR21495:SF59	DIRIGENT PROTEIN 20-RELATED	coord: 1..73 score: 3.9