CU115930 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU115930
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 5728504 .. 5729026 (-)
Sequence length528
The following sequences are available for this feature:

transcribed_cluster sequence

AGGTCAACAATATATATTTATATATAATACTAAATTGTAGAATTACTCAATGTTTTGTCTGTAAATCCTTTACAAATCCAATTACATTCAAACTGTATATGATTTTAGATATCCCCCATCTATTGCATATCTTTTATTAGTTTACACTCATTCAATAATAAAGAGACAAGAAATAAAAAATGGAAATAATAATAATAAGAAAGAAAAATCACACAAATCTATTAAATGGCTTTCTTCCAATTCCAGCAGGCAATGAAATAGAAGAATCCACACTCAAATTCCCCATAGATTGATTGTTATTATGATTGTTATTATTATTATAATCCAAACCCCTTTGAGAGTTGATATTTGGTGATAAGTTCTTGTTTGAAGACTTATTTGAGAACAAATTGGGTTTATCATTCTTCCATCTGAAAGGGAAAGAAATTCTTGTTTTTGATTGAGAATTATTATTATTAGTAGTAGTAGTAATAGGTGTAGGTGTTGAACATTCTACTTAGTTTGGCTTTGGCTGAAACTGTTGGAGCC
BLAST of CU115930 vs. NCBI nr
Match: gi|778711500|ref|XP_011656744.1| (PREDICTED: protein IQ-DOMAIN 14-like [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16
Identity = 52/94 (55.32%), Postives = 52/94 (55.32%), Query Frame = -3

Query: 212 ECSXXXXXXXXXXXXXSQSKTRISFPFRWKNDXXXXXXXXXXXXXXXXXXXXQRGLDYXX 271
           ECS             SQSKTRISFPFRWKND                    QRGLDY  
Sbjct: 452 ECSTPTPITTTTNNNNSQSKTRISFPFRWKNDKPNLFSNKSSNKNLSPNINSQRGLDYNN 511

Query: 272 XXXXXXXQSMGNLSVDSSISLPAGIGRKPFNRFV 331
                  QSMGNLSVDSSISLPAGIGRKPFNRFV
Sbjct: 512 NNNHNNNQSMGNLSVDSSISLPAGIGRKPFNRFV 545

Query: 332 391
           
Sbjct: 572 545

Query: 392 451
           
Sbjct: 632 545

Query: 452 494
           
Sbjct: 692 545

BLAST of CU115930 vs. NCBI nr
Match: gi|659120093|ref|XP_008460009.1| (PREDICTED: protein IQ-DOMAIN 14-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-11
Identity = 43/81 (53.09%), Postives = 46/81 (56.79%), Query Frame = -3

Query: 212 SQSKTRISFPFRWKNDXXXXXXXXXXXXXXXXXXXXQRGLDYXXXXXXXXX---QSMGNL 271
           +QSKTRISFPF+W N                     QRGLDY            QS+GNL
Sbjct: 457 NQSKTRISFPFKWNNKPNLLFSNNSSNKDSSPNINSQRGLDYNNNNNNNNNHNNQSVGNL 516

Query: 272 SVDSSISLPAGIGRKPFNRFV 331
           SVDSS SLPAGIGRKPFNRFV
Sbjct: 517 SVDSSTSLPAGIGRKPFNRFV 537

Query: 332 391
           
Sbjct: 577 537

Query: 392 446
           
Sbjct: 637 537

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|778711500|ref|XP_011656744.1|1.7e-1655.32PREDICTED: protein IQ-DOMAIN 14-like [Cucumis sativus][more]
gi|659120093|ref|XP_008460009.1|3.6e-1153.09PREDICTED: protein IQ-DOMAIN 14-like [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G087690Csa6G087690gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MQR37FKNP3UI02MQR37EST
G0017199G0017199EST
G0149843G0149843EST
H0101179H0101179EST