CU115791 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU115791
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	RNA-binding ASCH domain protein
Location	Chr2 : 1759410 .. 1759861 (+)
Sequence length	366

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AATTGCTGATTCCATTTGAGATGCGCGGTTTCCAGGGTGTTTATAACTTAGAAAAGAGGATATTTGAAGCAGCAGTTAGAGGTCTCACCCGTGTTAAATGCCCACTGCCTGTAAAGTTTCAACTTCCAGATCCTAGAGATCCCTTCTCCTTGAAGCCAGGATCTGTATCTTCATGTTCTCCCGAGACTAAAGGATCTGGATCTGAAGTGGATAAGTCATCTAAACTCAATGCTGCGATAGCTGGTGCTCGAGCAGCCGCTACTCAGTTTACGAGAAAGTACCAGGACCCCCAGACTTCGTCTGATTTTGGAATGGGGAAGTAAATCCAGAACTGAATTCTTGGGGAGGAGATCAATTTCAATCTTC

Library


Library category	ESTs
gynoecious flower library	1
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU115791 vs. TrEMBL
Match: A0A0A0LFF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009570 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.2e-46
Identity = 97/114 (85.09%), Postives = 98/114 (85.96%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP
Sbjct: 132 LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 191

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTSSDFGMGK*IQN*ILG 122
           ETKGSGSEVDKSSKLN          TQFTRKYQDPQTSSDFGMG   +   LG
Sbjct: 192 ETKGSGSEVDKSSKLNAAIAGARAAATQFTRKYQDPQTSSDFGMGSKSRTEFLG 245

Query: 123  182
           
Sbjct: 252  245

Query: 183  242
           
Sbjct: 312  245

Query: 243  302
           
Sbjct: 372  245

Query: 303  345
           
Sbjct: 432  245

[Close]

BLAST of CU115791 vs. TrEMBL
Match: M5W1S4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018471mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-24
Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRG+QGVYNLEK+I+EAA+RGLT V+ PLPVKF LP+P+DPFSLKPGS+S+  P
Sbjct: 132 LLIPFEMRGYQGVYNLEKKIYEAAIRGLTPVEGPLPVKFLLPNPQDPFSLKPGSISANVP 191

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTS 122
           ET+   SE+++SS L           TQF++K QD +T+
Sbjct: 192 ETR--TSELERSSSLTAAIAGARAAATQFSKKVQDLETT 228

Query: 123  182
           
Sbjct: 252  228

Query: 183  242
           
Sbjct: 312  228

Query: 243  300
           
Sbjct: 372  228

[Close]

BLAST of CU115791 vs. TrEMBL
Match: A0A0B2P6I0_GLYSO (Activating signal cointegrator 1 OS=Glycine soja GN=glysoja_013862 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-24
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRG+QGVYNLEK+I+EAAVRGL+ V CPLPVKF LPDPR+PFSLKPGS+S+ + 
Sbjct: 133 LLIPFEMRGYQGVYNLEKKIYEAAVRGLSPVNCPLPVKFPLPDPRNPFSLKPGSISALTS 192

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTSS 122
             K   SEVDKSS ++          TQF++K ++  +++
Sbjct: 193 NLK--ASEVDKSSSISLAIAGAQAAATQFSKKDENSHSTA 230

Query: 123  182
           
Sbjct: 253  230

Query: 183  242
           
Sbjct: 313  230

Query: 243  302
           
Sbjct: 373  230

[Close]

BLAST of CU115791 vs. TrEMBL
Match: A0A151U5M4_CAJCA (Activating signal cointegrator 1 OS=Cajanus cajan GN=KK1_007215 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-24
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRG+QGVYNLE++I+EAAVRGL+ V CPLPVKF LPDPRDP SLKP S+S+  P
Sbjct: 133 LLIPFEMRGYQGVYNLERKIYEAAVRGLSPVNCPLPVKFPLPDPRDPLSLKPCSISALRP 192

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTSS 122
             K  G+EVDKSS ++          TQF++K Q+  +++
Sbjct: 193 NLK--GTEVDKSSTISLAIAGARAAATQFSKKDQNSPSTA 230

Query: 123  182
           
Sbjct: 253  230

Query: 183  242
           
Sbjct: 313  230

Query: 243  302
           
Sbjct: 373  230

[Close]

BLAST of CU115791 vs. TrEMBL
Match: A0A0L9TIQ1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan845s003200 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.8e-24
Identity = 57/100 (57.00%), Postives = 77/100 (77.00%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRG+QGVYNLE++I++AAVRGL+ V  PLPVKF LPDPRDPF LKPGS+S+ +P
Sbjct: 133 LLIPFEMRGYQGVYNLERKIYDAAVRGLSPVNSPLPVKFPLPDPRDPFCLKPGSISALTP 192

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTSS 122
           ++K   +EVDKSS ++          TQF++K Q+  +++
Sbjct: 193 QSK--ATEVDKSSSISLAIAGAQAAATQFSKKDQNSHSTT 230

Query: 123  182
           
Sbjct: 253  230

Query: 183  242
           
Sbjct: 313  230

Query: 243  302
           
Sbjct: 373  230

[Close]

BLAST of CU115791 vs. NCBI nr
Match: gi|449443251|ref|XP_004139393.1| (PREDICTED: uncharacterized protein LOC101222080 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 2.4e-46
Identity = 97/114 (85.09%), Postives = 98/114 (85.96%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP
Sbjct: 132 LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 191

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTSSDFGMGK*IQN*ILG 122
           ETKGSGSEVDKSSKLN          TQFTRKYQDPQTSSDFGMG   +   LG
Sbjct: 192 ETKGSGSEVDKSSKLNAAIAGARAAATQFTRKYQDPQTSSDFGMGSKSRTEFLG 245

Query: 123  182
           
Sbjct: 252  245

Query: 183  242
           
Sbjct: 312  245

Query: 243  302
           
Sbjct: 372  245

Query: 303  345
           
Sbjct: 432  245

[Close]

BLAST of CU115791 vs. NCBI nr
Match: gi|659070741|ref|XP_008456438.1| (PREDICTED: uncharacterized protein LOC103496378 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-45
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP
Sbjct: 132 LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 191

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTSSDFGMGK*IQN*ILG 122
           ET+GSGSEV+KSSKLN          TQFTRKYQDPQTSS+FGMG   +   LG
Sbjct: 192 ETQGSGSEVEKSSKLNAAIAGARAAATQFTRKYQDPQTSSNFGMGSKSRTEFLG 245

Query: 123  182
           
Sbjct: 252  245

Query: 183  242
           
Sbjct: 312  245

Query: 243  302
           
Sbjct: 372  245

Query: 303  345
           
Sbjct: 432  245

[Close]

BLAST of CU115791 vs. NCBI nr
Match: gi|734324180|gb|KHN04955.1| (Activating signal cointegrator 1 [Glycine soja])

HSP 1 Score: 119.4 bits (298), Expect = 4.4e-24
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRG+QGVYNLEK+I+EAAVRGL+ V CPLPVKF LPDPR+PFSLKPGS+S+ + 
Sbjct: 133 LLIPFEMRGYQGVYNLEKKIYEAAVRGLSPVNCPLPVKFPLPDPRNPFSLKPGSISALTS 192

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTSS 122
             K   SEVDKSS ++          TQF++K ++  +++
Sbjct: 193 NLK--ASEVDKSSSISLAIAGAQAAATQFSKKDENSHSTA 230

Query: 123  182
           
Sbjct: 253  230

Query: 183  242
           
Sbjct: 313  230

Query: 243  302
           
Sbjct: 373  230

[Close]

BLAST of CU115791 vs. NCBI nr
Match: gi|595832375|ref|XP_007206465.1| (hypothetical protein PRUPE_ppa018471mg [Prunus persica])

HSP 1 Score: 119.4 bits (298), Expect = 4.4e-24
Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRG+QGVYNLEK+I+EAA+RGLT V+ PLPVKF LP+P+DPFSLKPGS+S+  P
Sbjct: 132 LLIPFEMRGYQGVYNLEKKIYEAAIRGLTPVEGPLPVKFLLPNPQDPFSLKPGSISANVP 191

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTS 122
           ET+   SE+++SS L           TQF++K QD +T+
Sbjct: 192 ETR--TSELERSSSLTAAIAGARAAATQFSKKVQDLETT 228

Query: 123  182
           
Sbjct: 252  228

Query: 183  242
           
Sbjct: 312  228

Query: 243  300
           
Sbjct: 372  228

[Close]

BLAST of CU115791 vs. NCBI nr
Match: gi|1012363348|gb|KYP74531.1| (Activating signal cointegrator 1 [Cajanus cajan])

HSP 1 Score: 118.2 bits (295), Expect = 9.7e-24
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 3


Query: 3   LLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFSLKPGSVSSCSP 62
           LLIPFEMRG+QGVYNLE++I+EAAVRGL+ V CPLPVKF LPDPRDP SLKP S+S+  P
Sbjct: 133 LLIPFEMRGYQGVYNLERKIYEAAVRGLSPVNCPLPVKFPLPDPRDPLSLKPCSISALRP 192

Query: 63  ETKGSGSEVDKSSKLNXXXXXXXXXXTQFTRKYQDPQTSS 122
             K  G+EVDKSS ++          TQF++K Q+  +++
Sbjct: 193 NLK--GTEVDKSSTISLAIAGARAAATQFSKKDQNSPSTA 230

Query: 123  182
           
Sbjct: 253  230

Query: 183  242
           
Sbjct: 313  230

Query: 243  302
           
Sbjct: 373  230

The following BLAST results are available for this feature:

BLAST of CU115791 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFF1_CUCSA	2.2e-46	85.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009570 PE=4 SV=1	[more]
M5W1S4_PRUPE	3.0e-24	60.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018471mg PE=4 SV=1	[more]
A0A0B2P6I0_GLYSO	3.0e-24	59.00	Activating signal cointegrator 1 OS=Glycine soja GN=glysoja_013862 PE=4 SV=1	[more]
A0A151U5M4_CAJCA	6.8e-24	59.00	Activating signal cointegrator 1 OS=Cajanus cajan GN=KK1_007215 PE=4 SV=1	[more]
A0A0L9TIQ1_PHAAN	8.8e-24	57.00	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan845s003200 PE=4 SV=1	[more]

BLAST of CU115791 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443251\|ref\|XP_004139393.1\|	2.4e-46	85.09	PREDICTED: uncharacterized protein LOC101222080 [Cucumis sativus]	[more]
gi\|659070741\|ref\|XP_008456438.1\|	7.6e-45	82.46	PREDICTED: uncharacterized protein LOC103496378 [Cucumis melo]	[more]
gi\|734324180\|gb\|KHN04955.1\|	4.4e-24	59.00	Activating signal cointegrator 1 [Glycine soja]	[more]
gi\|595832375\|ref\|XP_007206465.1\|	4.4e-24	60.61	hypothetical protein PRUPE_ppa018471mg [Prunus persica]	[more]
gi\|1012363348\|gb\|KYP74531.1\|	9.7e-24	59.00	Activating signal cointegrator 1 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G009570	Csa2G009570	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0102447	G0102447	EST
H0025585	H0025585	EST
H0153385	H0153385	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12963	THYROID RECEPTOR INTERACTING PROTEIN RELATED	coord: 2..32 score: 1.8