CU115426 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU115426
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 5728176 .. 5728969 (-)
Sequence length	224

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGATATTCATCTACCTGTTGATGAGAAGAATAGAGATCCGTCTCAGGTGCTATATTGTTCACGACATATGCTGGAGGTGGAAGCACGCTGATTTCTGATGGATATATGGGAGCCTGGTACCCATTCCAGTCTTGATCTTGAGATGGTGAAATCATAGCAGGTACAAATGTTGTGGCTTCATTAAGTACTCTTGGTGAAGTCCATGATGTGATCTGTGATTGGGA

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU115426 vs. Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.0e-09
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = -1


Query: 24  QSQITSWTSPRVLNEATTFVPAMISP-----SQDQDWNGYQAPIYPSEISVL-PPPAYVV 83
           Q+  TSW+SPR +N  + F+P M+S      SQ+ +WNGYQA +Y SE  V  P   Y++
Sbjct: 261 QASSTSWSSPRHVNGTSPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFSPSTTYLM 320

Query: 84  NNIAPETDLYSS 143
           NN + ET +  S
Sbjct: 321 NNSSAETSMLLS 332

Query: 144  203
           
Sbjct: 381  332

Query: 204  222
           
Sbjct: 441  332

[Close]

BLAST of CU115426 vs. TrEMBL
Match: A0A0A0LU93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050060 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = -1


Query: 3   SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 62
           SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP
Sbjct: 282 SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 341

Query: 63  ETDLYSSHQQVDEY 122
           ETDLYSSHQQVDEY
Sbjct: 342 ETDLYSSHQQVDEY 355

Query: 123  182
           
Sbjct: 402  355

Query: 183  225
           
Sbjct: 462  355

[Close]

BLAST of CU115426 vs. TrEMBL
Match: E5GBX3_CUCME (Nucleic acid binding protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-33
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = -1


Query: 3   SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 62
           SQSQITSWTSPRVLNEATTFVPAMISPSQD +WNGYQAPIYPSEISVLPPP YVVNNIAP
Sbjct: 284 SQSQITSWTSPRVLNEATTFVPAMISPSQDSEWNGYQAPIYPSEISVLPPPPYVVNNIAP 343

Query: 63  ETDLYSSHQQVDEY 122
           E DLYSSHQQVDEY
Sbjct: 344 EADLYSSHQQVDEY 357

Query: 123  182
           
Sbjct: 404  357

Query: 183  225
           
Sbjct: 464  357

[Close]

BLAST of CU115426 vs. TrEMBL
Match: D7SHC4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g09990 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-14
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = -1


Query: 15  SQSQITSWTSPRVLNEATTFVPAMISPSQ-----DQDWNGYQAPIY---PSEISVLPPPA 74
           SQS + SW+SPR LNE   FVP M SP+Q     + +WNGYQAP+Y   P E S+ PPPA
Sbjct: 276 SQSNMASWSSPRALNEPAPFVPIMFSPTQGVPPPNPEWNGYQAPLYPPPPPERSMHPPPA 335

Query: 75  YVVNNIAPETDLYSSHQQ 134
           +V+NN A + ++Y  HQQ
Sbjct: 336 FVINNTATDANVYGHHQQ 353

Query: 135  194
           
Sbjct: 396  353

Query: 195  225
           
Sbjct: 456  353

[Close]

BLAST of CU115426 vs. TrEMBL
Match: B9I3K6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09400g PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-14
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = -1


Query: 3   SQSQITSWTSPRVLNEATTFVPAMISPSQ-----DQDWNGYQAPIYPSEISVLPPPAYVV 62
           S S + SW+SPR LN+ T+FVP M SP+Q       DWNGYQAP+YP E S+ PP +Y +
Sbjct: 281 SSSSVGSWSSPRALNDPTSFVPIMFSPNQGVPPQSPDWNGYQAPLYPPERSLHPPLSYAL 340

Query: 63  NNIAPETDLYSSHQQ---VDEY 122
            NIA E+++Y+  QQ   VDE+
Sbjct: 341 INIATESNVYAPQQQQIVVDEF 362

Query: 123  182
           
Sbjct: 401  362

Query: 183  225
           
Sbjct: 461  362

[Close]

BLAST of CU115426 vs. TrEMBL
Match: I1K073_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G044300 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.6e-14
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = -1


Query: 3   SQSQITSWTSPRVLNEATTFVPAMISPSQ-----DQDWNGYQAPIYPSEISVLPPPAYVV 62
           SQ+ + SW+SPR LNEA+ FVP M+SP+Q       DWNGYQA +Y  E S+ PP  +V+
Sbjct: 292 SQTSVPSWSSPRTLNEASPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERSIHPPSTFVM 351

Query: 63  NNIAPETDLYSSHQQ---VDEY 122
           NN A +T++Y  HQ+   VDE+
Sbjct: 352 NNPAIDTNVYMHHQKQMPVDEF 373

Query: 123  182
           
Sbjct: 412  373

Query: 183  225
           
Sbjct: 472  373

[Close]

BLAST of CU115426 vs. NCBI nr
Match: gi|449469596|ref|XP_004152505.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = -1


Query: 3   SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 62
           SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP
Sbjct: 282 SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 341

Query: 63  ETDLYSSHQQVDEY 122
           ETDLYSSHQQVDEY
Sbjct: 342 ETDLYSSHQQVDEY 355

Query: 123  182
           
Sbjct: 402  355

Query: 183  225
           
Sbjct: 462  355

[Close]

BLAST of CU115426 vs. NCBI nr
Match: gi|778657993|ref|XP_011651926.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = -1


Query: 3   SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 62
           SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP
Sbjct: 286 SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 345

Query: 63  ETDLYSSHQQVDEY 122
           ETDLYSSHQQVDEY
Sbjct: 346 ETDLYSSHQQVDEY 359

Query: 123  182
           
Sbjct: 406  359

Query: 183  225
           
Sbjct: 466  359

[Close]

BLAST of CU115426 vs. NCBI nr
Match: gi|778657996|ref|XP_011651936.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X3 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = -1


Query: 3   SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 62
           SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP
Sbjct: 260 SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 319

Query: 63  ETDLYSSHQQVDEY 122
           ETDLYSSHQQVDEY
Sbjct: 320 ETDLYSSHQQVDEY 333

Query: 123  182
           
Sbjct: 380  333

Query: 183  225
           
Sbjct: 440  333

[Close]

BLAST of CU115426 vs. NCBI nr
Match: gi|659067397|ref|XP_008439243.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-33
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = -1


Query: 3   SQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAP 62
           SQSQITSWTSPRVLNEATTFVPAMISPSQD +WNGYQAPIYPSEISVLPPP YVVNNIAP
Sbjct: 284 SQSQITSWTSPRVLNEATTFVPAMISPSQDSEWNGYQAPIYPSEISVLPPPPYVVNNIAP 343

Query: 63  ETDLYSSHQQVDEY 122
           E DLYSSHQQVDEY
Sbjct: 344 EADLYSSHQQVDEY 357

Query: 123  182
           
Sbjct: 404  357

Query: 183  225
           
Sbjct: 464  357

[Close]

BLAST of CU115426 vs. NCBI nr
Match: gi|225456787|ref|XP_002277300.1| (PREDICTED: zinc finger CCCH domain-containing protein 67 [Vitis vinifera])

HSP 1 Score: 84.3 bits (207), Expect = 9.5e-14
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = -1


Query: 15  SQSQITSWTSPRVLNEATTFVPAMISPSQ-----DQDWNGYQAPIY---PSEISVLPPPA 74
           SQS + SW+SPR LNE   FVP M SP+Q     + +WNGYQAP+Y   P E S+ PPPA
Sbjct: 276 SQSNMASWSSPRALNEPAPFVPIMFSPTQGVPPPNPEWNGYQAPLYPPPPPERSMHPPPA 335

Query: 75  YVVNNIAPETDLYSSHQQ 134
           +V+NN A + ++Y  HQQ
Sbjct: 336 FVINNTATDANVYGHHQQ 353

Query: 135  194
           
Sbjct: 396  353

Query: 195  225
           
Sbjct: 456  353

The following BLAST results are available for this feature:

BLAST of CU115426 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H43_ARATH	7.0e-09	43.06	Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g484...	[more]

BLAST of CU115426 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU93_CUCSA	1.4e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050060 PE=4 SV=1	[more]
E5GBX3_CUCME	2.2e-33	94.59	Nucleic acid binding protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
D7SHC4_VITVI	2.3e-14	52.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g09990 PE=4 SV=...	[more]
B9I3K6_POPTR	3.9e-14	51.22	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09400g PE=4 SV=1	[more]
I1K073_SOYBN	8.6e-14	50.00	Uncharacterized protein OS=Glycine max GN=GLYMA_05G044300 PE=4 SV=1	[more]

BLAST of CU115426 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469596\|ref\|XP_004152505.1\|	5.7e-35	100.00	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2 [Cucumis sat...	[more]
gi\|778657993\|ref\|XP_011651926.1\|	5.7e-35	100.00	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1 [Cucumis sat...	[more]
gi\|778657996\|ref\|XP_011651936.1\|	5.7e-35	100.00	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X3 [Cucumis sat...	[more]
gi\|659067397\|ref\|XP_008439243.1\|	9.1e-33	94.59	PREDICTED: zinc finger CCCH domain-containing protein 43 [Cucumis melo]	[more]
gi\|225456787\|ref\|XP_002277300.1\|	9.5e-14	52.56	PREDICTED: zinc finger CCCH domain-containing protein 67 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G050060	Csa1G050060	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KWGFA	FKNP3UI02KWGFA	EST
H0045212	H0045212	EST
H0099856	H0099856	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12506	PROTEIN PHOSPHATASE RELATED	coord: 1..75 score: 9.7
None	No IPR available	PANTHER	PTHR12506:SF20	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43	coord: 1..75 score: 9.7