CU115300 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU115300
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTransmembrane 9 superfamily member
LocationChr1 : 12538572 .. 12539264 (+)
Sequence length285
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGATTGATTCGTTTTTCTTTCTTCTTCTTCTTCGTGTAAGGTAACGGGGAAACCACTAAAAGTAAGGGATTTACAGTCTCTGAAAGAGGTGTAAGAGATTTCTGAAGCAATTTTTGGATCTGGGTTGGCTTTAGATCTCTTGTTTAAGCCATGGCGAGACGGCCTTTCGTGTTCCTTCTTTGGATCTTCGCATGTCTCTTCCTTTTCTTTCGTGCTTCCTGTTTCTATCTCCCGGTGTGGCTCCCCAGGATTTTCATAAGGGAGATCTTCTGAAGGG
Library categoryESTs
fruit (8DPP) library3
BLAST of CU115300 vs. TrEMBL
Match: A0A0A0LTQ4_CUCSA (Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 3

Query: 159 MARRPFVFLLWIFACLFLFFRASCFYLPVWLPRIF 218
           MARRPFVFLLWIFACLFLFFRASCFYLP   P+ F
Sbjct: 1   MARRPFVFLLWIFACLFLFFRASCFYLPGVAPQDF 35

Query: 219 264
           
Sbjct: 61  35

BLAST of CU115300 vs. TrEMBL
Match: A0A0A0LTQ4_CUCSA (Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1)

HSP 1 Score: 32.7 bits (73), Expect = 2.9e+02
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 2

Query: 242 GVAPQDFHKGDLLK 284
           GVAPQDFHKGDLL+
Sbjct: 29  GVAPQDFHKGDLLR 42

BLAST of CU115300 vs. NCBI nr
Match: gi|659086301|ref|XP_008443860.1| (PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 3

Query: 159 MARRPFVFLLWIFACLFLFFRASCFYLPVWLPRIF 218
           MARRPFVFLLWIFACLFLFFRASCFYLP   P+ F
Sbjct: 1   MARRPFVFLLWIFACLFLFFRASCFYLPGVAPQDF 35

Query: 219 264
           
Sbjct: 61  35

BLAST of CU115300 vs. NCBI nr
Match: gi|449457879|ref|XP_004146675.1| (PREDICTED: transmembrane 9 superfamily member 9-like [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 3

Query: 159 MARRPFVFLLWIFACLFLFFRASCFYLPVWLPRIF 218
           MARRPFVFLLWIFACLFLFFRASCFYLP   P+ F
Sbjct: 1   MARRPFVFLLWIFACLFLFFRASCFYLPGVAPQDF 35

Query: 219 264
           
Sbjct: 61  35

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LTQ4_CUCSA2.4e-0885.71Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1[more]
A0A0A0LTQ4_CUCSA2.9e+0292.86Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|659086301|ref|XP_008443860.1|1.4e-0685.71PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis melo][more]
gi|449457879|ref|XP_004146675.1|1.4e-0685.71PREDICTED: transmembrane 9 superfamily member 9-like [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G256720Csa1G256720gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LDKFBFKNP3UI02LDKFBEST
FKNP3UI02LZ3I9FKNP3UI02LZ3I9EST
FKNP3UI02OHWP1FKNP3UI02OHWP1EST