CU114667 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU114667
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 11454613 .. 11455433 (+)
Sequence length379
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CGACACTAAAGGAAAATAAATAAGATAAAAAAATCTTCTTAACTTCCTTAGTTCCGTCCAATCTCCTAAAAGCTCTAGTCGTCGGAAGGCCATATCACAGTCTCCATTAGCCTCTCTCGCATCAACTCCAAGTTCTCATCAGATATCCCTTTGTATATTTCAGCATGATCACATTTCTTAACCCATTTGTTATAGAGATGAAGCCTTGTTATCATCACCCTCTCAGCCAAATCTTGCTTCTCCTTTACAAGAGTTCGAATGAAACGCTTCCCCTTCCCCAGGCTTGTGATTTACAACAAAGTTATAAAACCATCTGTACTGTGTTGGGGTTCATCTCATAAAGCTGATTCAAAACTGTACTTACACAGCTTTGTATGTG
Homology
[Close]
BLAST of CU114667 vs. TrEMBL
Match: A0A0A0KX19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 56/67 (83.58%), Postives = 57/67 (85.07%), Query Frame = -3 

Query: 78  GKGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXT 137
           G+GKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDEN          T
Sbjct: 147 GEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMET 206

Query: 138 VIWPSDD 197
           VIWPSDD
Sbjct: 207 VIWPSDD 213

Query: 198  257
           
Sbjct: 267  213

Query: 258  279
           
Sbjct: 327  213

[Close]
BLAST of CU114667 vs. TrEMBL
Match: A0A0A0KX19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-04
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = -2 

Query: 262 PTQYRWFYNFVVNHKPGEGEAF 321
           PTQYRWFYNFVVNHKPGEG+ F
Sbjct: 131 PTQYRWFYNFVVNHKPGEGKRF 152

Query: 322  328
           
Sbjct: 191  152


HSP 2 Score: 108.6 bits (270), Expect = 5.5e-21
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = -3 

Query: 57  GKGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXT 116
           G GKRF+R LVKEKQDLAERVM+TRLHLY KW+KKCDHAEIYK ISDEN          T
Sbjct: 152 GDGKRFLRALVKEKQDLAERVMVTRLHLYGKWIKKCDHAEIYKEISDENLELMRERLKET 211

Query: 117 VIWPSDD*SF*EIG 176
           VIWPSDD +  +IG
Sbjct: 212 VIWPSDDTNTEKIG 225

Query: 177  236
           
Sbjct: 272  225

Query: 237  279
           
Sbjct: 332  225

[Close]
BLAST of CU114667 vs. TrEMBL
Match: B9GF05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26540g PE=4 SV=2)

HSP 1 Score: 42.0 bits (97), Expect = 6.4e-01
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = -2 

Query: 262 PTQYRWFYNFVVNHKPGEGEAF 321
           PTQY WFYNFV ++KPG+G+ F
Sbjct: 136 PTQYTWFYNFVAHNKPGDGKRF 157

Query: 322  328
           
Sbjct: 196  157


HSP 2 Score: 104.8 bits (260), Expect = 8.0e-20
Identity = 52/74 (70.27%), Postives = 56/74 (75.68%), Query Frame = -3 

Query: 57  GKGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXT 116
           G GKRFIR+L KEKQDLAERVM+TRLHLY KWVKKCDHAEIYK ISDEN          T
Sbjct: 147 GDGKRFIRSLGKEKQDLAERVMVTRLHLYGKWVKKCDHAEIYKEISDENLELMRERLMET 206

Query: 117 VIWPSDD*SF*EIG 176
           V WPSDD +  +IG
Sbjct: 207 VKWPSDDTNTEKIG 220

Query: 177  236
           
Sbjct: 267  220

Query: 237  279
           
Sbjct: 327  220

[Close]
BLAST of CU114667 vs. TrEMBL
Match: B9HNW9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05790g PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 4.2e+00
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = -2 

Query: 262 PTQYRWFYNFVVNHKPGEGEAF 321
           PTQY W YNFV  +KPG+G+ F
Sbjct: 131 PTQYTWLYNFVAQNKPGDGKRF 152

Query: 322  328
           
Sbjct: 191  152


HSP 2 Score: 104.4 bits (259), Expect = 1.0e-19
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = -3 

Query: 57  GKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXTVI 116
           GKRFIR+LVKEKQDLAERVM+TRLHLY KWVKKC+HAEIY+ ISDEN          T+I
Sbjct: 153 GKRFIRSLVKEKQDLAERVMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLKETII 212

Query: 117 WPSDD*SF*EIG 176
           WPSDD +  +IG
Sbjct: 213 WPSDDSNTEKIG 224

Query: 177  236
           
Sbjct: 273  224

Query: 237  273
           
Sbjct: 333  224

[Close]
BLAST of CU114667 vs. TrEMBL
Match: A0A067JQ23_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25926 PE=4 SV=1)

HSP 1 Score: 37.7 bits (86), Expect = 1.2e+01
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = -2 

Query: 262 PTQYRWFYNFVVNHKPGEGEAF 321
           PTQYRW Y+FV ++KP +G+ F
Sbjct: 135 PTQYRWLYDFVASNKPADGKRF 156

Query: 322  328
           
Sbjct: 195  156


HSP 2 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = -3 

Query: 57  GKGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXT 116
           G GKRF+R LVKE+QDLAERVM+TRLHLY KWVKKC+HAEIY+ ISDEN          T
Sbjct: 95  GDGKRFLRLLVKERQDLAERVMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMET 154

Query: 117 VIWPSDD*SF*EIG 176
           VIWPSDD +  +IG
Sbjct: 155 VIWPSDDTNTEKIG 168

Query: 177  236
           
Sbjct: 215  168

Query: 237  279
           
Sbjct: 275  168

[Close]
BLAST of CU114667 vs. NCBI nr
Match: gi|449448719|ref|XP_004142113.1| (PREDICTED: uncharacterized protein LOC101203881 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 5.9e-24
Identity = 56/67 (83.58%), Postives = 57/67 (85.07%), Query Frame = -3 

Query: 78  GKGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXT 137
           G+GKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDEN          T
Sbjct: 147 GEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMET 206

Query: 138 VIWPSDD 197
           VIWPSDD
Sbjct: 207 VIWPSDD 213

Query: 198  257
           
Sbjct: 267  213

Query: 258  279
           
Sbjct: 327  213

[Close]
BLAST of CU114667 vs. NCBI nr
Match: gi|659097603|ref|XP_008449714.1| (PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 5.0e-23
Identity = 55/67 (82.09%), Postives = 56/67 (83.58%), Query Frame = -3 

Query: 78  GKGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXT 137
           G+GKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDEN          T
Sbjct: 147 GEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELMRERLMET 206

Query: 138 VIWPSDD 197
           VIWPSDD
Sbjct: 207 VIWPSDD 213

Query: 198  257
           
Sbjct: 267  213

Query: 258  279
           
Sbjct: 327  213

[Close]
BLAST of CU114667 vs. NCBI nr
Match: gi|566151127|ref|XP_002298402.2| (hypothetical protein POPTR_0001s26540g [Populus trichocarpa])

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = -3 

Query: 57  GKGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXT 116
           G GKRF+R LVKEKQDLAERVM+TRLHLY KW+KKCDHAEIYK ISDEN          T
Sbjct: 152 GDGKRFLRALVKEKQDLAERVMVTRLHLYGKWIKKCDHAEIYKEISDENLELMRERLKET 211

Query: 117 VIWPSDD*SF*EIG 176
           VIWPSDD +  +IG
Sbjct: 212 VIWPSDDTNTEKIG 225

Query: 177  236
           
Sbjct: 272  225

Query: 237  279
           
Sbjct: 332  225

[Close]
BLAST of CU114667 vs. NCBI nr
Match: gi|224106179|ref|XP_002314074.1| (hypothetical protein POPTR_0009s05790g [Populus trichocarpa])

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 52/74 (70.27%), Postives = 56/74 (75.68%), Query Frame = -3 

Query: 57  GKGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXT 116
           G GKRFIR+L KEKQDLAERVM+TRLHLY KWVKKCDHAEIYK ISDEN          T
Sbjct: 147 GDGKRFIRSLGKEKQDLAERVMVTRLHLYGKWVKKCDHAEIYKEISDENLELMRERLMET 206

Query: 117 VIWPSDD*SF*EIG 176
           V WPSDD +  +IG
Sbjct: 207 VKWPSDDTNTEKIG 220

Query: 177  236
           
Sbjct: 267  220

Query: 237  279
           
Sbjct: 327  220

[Close]
BLAST of CU114667 vs. NCBI nr
Match: gi|743924198|ref|XP_011006217.1| (PREDICTED: uncharacterized protein LOC105112273 [Populus euphratica])

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 50/74 (67.57%), Postives = 56/74 (75.68%), Query Frame = -3 

Query: 57  GKGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENXXXXXXXXXXT 116
           G GKRF+R L KEKQDLAERVM+TRLHLY KW+KKCDHAEIYK ISD+N          T
Sbjct: 49  GDGKRFLRALGKEKQDLAERVMVTRLHLYGKWIKKCDHAEIYKEISDDNLELMRERLKET 108

Query: 117 VIWPSDD*SF*EIG 176
           VIWPSDD +  +IG
Sbjct: 109 VIWPSDDTNTEKIG 122

Query: 177  236
           
Sbjct: 169  122

Query: 237  279
           
Sbjct: 229  122

The following BLAST results are available for this feature:
BLAST of CU114667 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KX19_CUCSA1.2e-2383.58Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291920 PE=4 SV=1[more]
A0A0A0KX19_CUCSA8.1e-0490.91Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291920 PE=4 SV=1[more]
B9GF05_POPTR6.4e-0168.18Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26540g PE=4 SV=2[more]
B9HNW9_POPTR4.2e+0063.64Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05790g PE=4 SV=1[more]
A0A067JQ23_JATCU1.2e+0159.09Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25926 PE=4 SV=1[more]
BLAST of CU114667 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448719|ref|XP_004142113.1|5.9e-2483.58PREDICTED: uncharacterized protein LOC101203881 [Cucumis sativus][more]
gi|659097603|ref|XP_008449714.1|5.0e-2382.09PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo][more]
gi|566151127|ref|XP_002298402.2|1.6e-2170.27hypothetical protein POPTR_0001s26540g [Populus trichocarpa][more]
gi|224106179|ref|XP_002314074.1|2.3e-2070.27hypothetical protein POPTR_0009s05790g [Populus trichocarpa][more]
gi|743924198|ref|XP_011006217.1|2.3e-2067.57PREDICTED: uncharacterized protein LOC105112273 [Populus euphratica][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G291920Csa4G291920gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0000133G0000133EST
G0002163G0002163EST
G0160535G0160535EST
G0177324G0177324EST
G0201906G0201906EST
H0176977H0176977EST