CU114406 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU114406
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 23197730 .. 23199828 (-)
Sequence length	299

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGCCAGATATATTCCCAGAGGCTCCAATGCCTCTATGCCACAATATCTTGCATATTCGGGTCCAACCATCAAAATGGCTTGGCAAATTGCAATGACAATCACTCCTTGGCTTCCAGCTAAGTGAAGCCCTGGTATTCCAAGATAGTCGAGTGTATCTCCCTTAAGTTTTGAATAGCCCACTCGCCACCAGATGGGTTCAGTGAAATGAAGAGCTCCAAAAATATCCAAGATCTCTGGAACTAAAGCACCTAGGGATGCTAACATAGCCCCAACGAGCATGCAATATTTCAAAGTTGAAG

Library


Library category	ESTs
fruit (8DPP) library	3
gynoecious flower library	1

Homology

[Close]

BLAST of CU114406 vs. Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.7e-06
Identity = 31/99 (31.31%), Postives = 47/99 (47.47%), Query Frame = -3


Query: 10  AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 69
           AML +LG + PE+L+ +  + F EP+W++ G        LDYLG P  +L  +Q ++ + 
Sbjct: 103 AMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNP--NLVHAQSILAVL 162

Query: 70  ICQAILM-------------VGPEYARYCGIEALEPLGI 129
             Q +LM             VG     Y G +  +PLG+
Sbjct: 163 GFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGL 199

Query: 130  189
           
Sbjct: 223  199

Query: 190  249
           
Sbjct: 283  199

Query: 250  268
           
Sbjct: 343  199

[Close]

BLAST of CU114406 vs. TrEMBL
Match: A0A0A0L0U5_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G664570 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.1e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLASLGALVPEILDIFGA HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA
Sbjct: 105 AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 164

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQAILMVGPEYARYCGIEALEPLGIYL
Sbjct: 165 ICQAILMVGPEYARYCGIEALEPLGIYL 192

Query: 124  183
           
Sbjct: 225  192

Query: 184  243
           
Sbjct: 285  192

Query: 244  268
           
Sbjct: 345  192

[Close]

BLAST of CU114406 vs. TrEMBL
Match: A0A059BQZ6_EUCGR (Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_F01826 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.2e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLA+LGALVPE+LD+ GA HF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA
Sbjct: 167 AMLAALGALVPEVLDMVGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 226

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQA+LMVGPEYARYCGIEALEPLGIYL
Sbjct: 227 ICQALLMVGPEYARYCGIEALEPLGIYL 254

Query: 124  183
           
Sbjct: 287  254

Query: 184  243
           
Sbjct: 347  254

Query: 244  268
           
Sbjct: 407  254

[Close]

BLAST of CU114406 vs. TrEMBL
Match: A0A059BPY7_EUCGR (Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_F01826 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.2e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLA+LGALVPE+LD+ GA HF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA
Sbjct: 84  AMLAALGALVPEVLDMVGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 143

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQA+LMVGPEYARYCGIEALEPLGIYL
Sbjct: 144 ICQALLMVGPEYARYCGIEALEPLGIYL 171

Query: 124  183
           
Sbjct: 204  171

Query: 184  243
           
Sbjct: 264  171

Query: 244  268
           
Sbjct: 324  171

[Close]

BLAST of CU114406 vs. TrEMBL
Match: M5WMP2_PRUPE (Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa008546mg PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-40
Identity = 79/88 (89.77%), Postives = 85/88 (96.59%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLA+LGAL+PEILD+ GA HF EP+WWRVGYSKLKGDTLDYLGIPGLH+AGSQGVIVIA
Sbjct: 161 AMLAALGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHVAGSQGVIVIA 220

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQA+LMVGPEYARYCGIEALEPLGIYL
Sbjct: 221 ICQALLMVGPEYARYCGIEALEPLGIYL 248

Query: 124  183
           
Sbjct: 281  248

Query: 184  243
           
Sbjct: 341  248

Query: 244  268
           
Sbjct: 401  248

[Close]

BLAST of CU114406 vs. TrEMBL
Match: A0A067KWW2_JATCU (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_08016 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.5e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLA+LGALVPE+LD+ GA HF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA
Sbjct: 171 AMLAALGALVPELLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 230

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQA+LMVGPEYARYCGIEALEPLGIYL
Sbjct: 231 ICQALLMVGPEYARYCGIEALEPLGIYL 258

Query: 124  183
           
Sbjct: 291  258

Query: 184  243
           
Sbjct: 351  258

Query: 244  268
           
Sbjct: 411  258

[Close]

BLAST of CU114406 vs. NCBI nr
Match: gi|449455655|ref|XP_004145567.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 7.6e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLASLGALVPEILDIFGA HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA
Sbjct: 169 AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 228

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQAILMVGPEYARYCGIEALEPLGIYL
Sbjct: 229 ICQAILMVGPEYARYCGIEALEPLGIYL 256

Query: 124  183
           
Sbjct: 289  256

Query: 184  243
           
Sbjct: 349  256

Query: 244  268
           
Sbjct: 409  256

[Close]

BLAST of CU114406 vs. NCBI nr
Match: gi|778697301|ref|XP_011654292.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 7.6e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLASLGALVPEILDIFGA HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA
Sbjct: 120 AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 179

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQAILMVGPEYARYCGIEALEPLGIYL
Sbjct: 180 ICQAILMVGPEYARYCGIEALEPLGIYL 207

Query: 124  183
           
Sbjct: 240  207

Query: 184  243
           
Sbjct: 300  207

Query: 244  268
           
Sbjct: 360  207

[Close]

BLAST of CU114406 vs. NCBI nr
Match: gi|700200392|gb|KGN55550.1| (hypothetical protein Csa_4G664570 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 7.6e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLASLGALVPEILDIFGA HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA
Sbjct: 105 AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 164

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQAILMVGPEYARYCGIEALEPLGIYL
Sbjct: 165 ICQAILMVGPEYARYCGIEALEPLGIYL 192

Query: 124  183
           
Sbjct: 225  192

Query: 184  243
           
Sbjct: 285  192

Query: 244  268
           
Sbjct: 345  192

[Close]

BLAST of CU114406 vs. NCBI nr
Match: gi|659105211|ref|XP_008453032.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 7.6e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLASLGALVPEILDIFGA HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA
Sbjct: 178 AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 237

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQAILMVGPEYARYCGIEALEPLGIYL
Sbjct: 238 ICQAILMVGPEYARYCGIEALEPLGIYL 265

Query: 124  183
           
Sbjct: 298  265

Query: 184  243
           
Sbjct: 358  265

Query: 244  268
           
Sbjct: 418  265

[Close]

BLAST of CU114406 vs. NCBI nr
Match: gi|659105213|ref|XP_008453033.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 7.6e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = -3


Query: 4   AMLASLGALVPEILDIFGALHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 63
           AMLASLGALVPEILDIFGA HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA
Sbjct: 129 AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 188

Query: 64  ICQAILMVGPEYARYCGIEALEPLGIYL 123
           ICQAILMVGPEYARYCGIEALEPLGIYL
Sbjct: 189 ICQAILMVGPEYARYCGIEALEPLGIYL 216

Query: 124  183
           
Sbjct: 249  216

Query: 184  243
           
Sbjct: 309  216

Query: 244  268
           
Sbjct: 369  216

The following BLAST results are available for this feature:

BLAST of CU114406 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB23_SOLLC	9.7e-06	31.31	Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB...	[more]

BLAST of CU114406 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0U5_CUCSA	9.1e-43	98.86	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G66457...	[more]
A0A059BQZ6_EUCGR	3.2e-40	90.91	Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_...	[more]
A0A059BPY7_EUCGR	3.2e-40	90.91	Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_...	[more]
M5WMP2_PRUPE	4.2e-40	89.77	Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa008...	[more]
A0A067KWW2_JATCU	5.5e-40	90.91	Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_08016 ...	[more]

BLAST of CU114406 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455655\|ref\|XP_004145567.1\|	7.6e-43	98.86	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucu...	[more]
gi\|778697301\|ref\|XP_011654292.1\|	7.6e-43	98.86	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucu...	[more]
gi\|700200392\|gb\|KGN55550.1\|	7.6e-43	98.86	hypothetical protein Csa_4G664570 [Cucumis sativus]	[more]
gi\|659105211\|ref\|XP_008453032.1\|	7.6e-43	98.86	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis m...	[more]
gi\|659105213\|ref\|XP_008453033.1\|	7.6e-43	98.86	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis m...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR023329	Chlorophyll_a/b-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G664570	Csa4G664570	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02L1SLO	FKNP3UI02L1SLO	EST
FKNP3UI02MCQ08	FKNP3UI02MCQ08	EST
FKNP3UI02OQ166	FKNP3UI02OQ166	EST
G0195223	G0195223	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 12..97 score: 1.4
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 12..91 score: 3.2
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 12..94 score: 3.92
None	No IPR available	PANTHER	PTHR21649:SF24	CHLOROPHYLL A-B BINDING FAMILY PROTEIN	coord: 12..97 score: 1.4