CU113907 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU113907
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Glycosyl hydrolase of Uncharacterized protein function (DUF1680), putative
Location	Chr4 : 11293720 .. 11294015 (-)
Sequence length	298

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGAGAGACTTGTAAATTTGTCTGATGCAAACTCGGAGGGGCACTCCTCTGATTTCTATCTAGTTGAGGGATTAGATGGAAAGAATGGAACGGTATCGTTGGCATCCATAGATAATGAAGGCTGCTTTGTTTACAGTGGAGTGAACTATGAATCTGGTGCACAGTTAAAGCTAAGCTGCAAGTCAAAGCTGTCATTAGATGATGGATTCGATGAAGCGTCCAGTTTTTTGCTGGAAAGTGGAGCAAGTCAGTATCATCCAATAAGCTTTGTTACAAAAGGAATGACAAGGAACTTTCTT

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	1

Homology

[Close]

BLAST of CU113907 vs. TrEMBL
Match: A0A0A0KZB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290750 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.1e-38
Identity = 81/96 (84.38%), Postives = 84/96 (87.50%), Query Frame = 2


Query: 11  VNLSDANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXX 70
           + ++DANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQ         
Sbjct: 444 LEIADANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQLKLSCKSKL 503

Query: 71  XXDDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 130
             DDGFDEASSFLLESGASQYHPISFVTKGMTRNFL
Sbjct: 504 SLDDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 539

Query: 131  190
           
Sbjct: 564  539

Query: 191  250
           
Sbjct: 624  539

Query: 251  299
           
Sbjct: 684  539

[Close]

BLAST of CU113907 vs. TrEMBL
Match: V4UAN4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014240mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-19
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 2


Query: 17  LSDANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXXXX 76
           +SD+  EG SS F LV GLDGK+ T+SL +++  GCFVYSGVN+ SGA            
Sbjct: 749 VSDSPKEGDSSVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGAS-LKLSCSTESS 808

Query: 77  DDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 136
           +DGF+EA SF++E G S+YHPISFV KG  RNFL
Sbjct: 809 EDGFNEAVSFVMEKGISEYHPISFVAKGARRNFL 841

Query: 137  196
           
Sbjct: 869  841

Query: 197  256
           
Sbjct: 929  841

Query: 257  299
           
Sbjct: 989  841

[Close]

BLAST of CU113907 vs. TrEMBL
Match: A0A067FFC7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002978mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-19
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 2


Query: 17  LSDANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXXXX 76
           +SD+  EG SS F LV GLDGK+ T+SL +++  GCFVYSGVN+ SGA            
Sbjct: 749 VSDSPKEGDSSVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGAS-LKLSCSTESS 808

Query: 77  DDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 136
           +DGF+EA SF++E G S+YHPISFV KG  RNFL
Sbjct: 809 EDGFNEAVSFVMEKGISEYHPISFVAKGARRNFL 841

Query: 137  196
           
Sbjct: 869  841

Query: 197  256
           
Sbjct: 929  841

Query: 257  299
           
Sbjct: 989  841

[Close]

BLAST of CU113907 vs. TrEMBL
Match: A0A067FBQ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002978mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-19
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 2


Query: 17  LSDANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXXXX 76
           +SD+  EG SS F LV GLDGK+ T+SL +++  GCFVYSGVN+ SGA            
Sbjct: 493 VSDSPKEGDSSVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGAS-LKLSCSTESS 552

Query: 77  DDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 136
           +DGF+EA SF++E G S+YHPISFV KG  RNFL
Sbjct: 553 EDGFNEAVSFVMEKGISEYHPISFVAKGARRNFL 585

Query: 137  196
           
Sbjct: 613  585

Query: 197  256
           
Sbjct: 673  585

Query: 257  299
           
Sbjct: 733  585

[Close]

BLAST of CU113907 vs. TrEMBL
Match: F6GU88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01770 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 2


Query: 14  NLSDANSE-GHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXX 73
           NL  ANS  G  S F+LV GLDGK+GTVSL S   + C+VYSG++Y SG           
Sbjct: 748 NLGIANSAAGKGSLFHLVAGLDGKDGTVSLESESQKDCYVYSGIDYNSGTSIKLKSLSES 807

Query: 74  XX-DDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 133
              D+ F++A+SF+L+ G SQYHPISFV KGM RNFL
Sbjct: 808 GSSDEDFNKATSFILKEGISQYHPISFVAKGMKRNFL 844

Query: 134  193
           
Sbjct: 868  844

Query: 194  253
           
Sbjct: 928  844

Query: 254  299
           
Sbjct: 988  844

[Close]

BLAST of CU113907 vs. NCBI nr
Match: gi|778693146|ref|XP_011653585.1| (PREDICTED: uncharacterized protein LOC101207833 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 7.4e-38
Identity = 81/96 (84.38%), Postives = 84/96 (87.50%), Query Frame = 2


Query: 11  VNLSDANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXX 70
           + ++DANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQ         
Sbjct: 752 LEIADANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQLKLSCKSKL 811

Query: 71  XXDDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 130
             DDGFDEASSFLLESGASQYHPISFVTKGMTRNFL
Sbjct: 812 SLDDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 847

Query: 131  190
           
Sbjct: 872  847

Query: 191  250
           
Sbjct: 932  847

Query: 251  299
           
Sbjct: 992  847

[Close]

BLAST of CU113907 vs. NCBI nr
Match: gi|700199001|gb|KGN54159.1| (hypothetical protein Csa_4G290750 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 7.4e-38
Identity = 81/96 (84.38%), Postives = 84/96 (87.50%), Query Frame = 2


Query: 11  VNLSDANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXX 70
           + ++DANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQ         
Sbjct: 444 LEIADANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQLKLSCKSKL 503

Query: 71  XXDDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 130
             DDGFDEASSFLLESGASQYHPISFVTKGMTRNFL
Sbjct: 504 SLDDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 539

Query: 131  190
           
Sbjct: 564  539

Query: 191  250
           
Sbjct: 624  539

Query: 251  299
           
Sbjct: 684  539

[Close]

BLAST of CU113907 vs. NCBI nr
Match: gi|659097647|ref|XP_008449737.1| (PREDICTED: uncharacterized protein LOC103491528 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 75/96 (78.12%), Postives = 83/96 (86.46%), Query Frame = 2


Query: 11  VNLSDANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXX 70
           + ++DANSE HSS+FYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESG+Q         
Sbjct: 752 LEIADANSEAHSSEFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGSQLKLSCKSKL 811

Query: 71  XXDDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 130
             DDGFDEASSF++ESGASQYHPISFVTKG+TRNFL
Sbjct: 812 SLDDGFDEASSFVMESGASQYHPISFVTKGLTRNFL 847

Query: 131  190
           
Sbjct: 872  847

Query: 191  250
           
Sbjct: 932  847

Query: 251  299
           
Sbjct: 992  847

[Close]

BLAST of CU113907 vs. NCBI nr
Match: gi|641845944|gb|KDO64829.1| (hypothetical protein CISIN_1g002978mg [Citrus sinensis])

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-19
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 2


Query: 17  LSDANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXXXX 76
           +SD+  EG SS F LV GLDGK+ T+SL +++  GCFVYSGVN+ SGA            
Sbjct: 493 VSDSPKEGDSSVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGAS-LKLSCSTESS 552

Query: 77  DDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 136
           +DGF+EA SF++E G S+YHPISFV KG  RNFL
Sbjct: 553 EDGFNEAVSFVMEKGISEYHPISFVAKGARRNFL 585

Query: 137  196
           
Sbjct: 613  585

Query: 197  256
           
Sbjct: 673  585

Query: 257  299
           
Sbjct: 733  585

[Close]

BLAST of CU113907 vs. NCBI nr
Match: gi|567907465|ref|XP_006446046.1| (hypothetical protein CICLE_v10014240mg [Citrus clementina])

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-19
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 2


Query: 17  LSDANSEGHSSDFYLVEGLDGKNGTVSLASIDNEGCFVYSGVNYESGAQXXXXXXXXXXX 76
           +SD+  EG SS F LV GLDGK+ T+SL +++  GCFVYSGVN+ SGA            
Sbjct: 749 VSDSPKEGDSSVFRLVAGLDGKDETISLEAVNQNGCFVYSGVNFNSGAS-LKLSCSTESS 808

Query: 77  DDGFDEASSFLLESGASQYHPISFVTKGMTRNFL 136
           +DGF+EA SF++E G S+YHPISFV KG  RNFL
Sbjct: 809 EDGFNEAVSFVMEKGISEYHPISFVAKGARRNFL 841

Query: 137  196
           
Sbjct: 869  841

Query: 197  256
           
Sbjct: 929  841

Query: 257  299
           
Sbjct: 989  841

The following BLAST results are available for this feature:

BLAST of CU113907 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZB3_CUCSA	5.1e-38	84.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290750 PE=4 SV=1	[more]
V4UAN4_9ROSI	1.8e-19	55.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014240mg PE=4 SV=1	[more]
A0A067FFC7_CITSI	1.8e-19	55.32	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002978mg PE=4 SV=1	[more]
A0A067FBQ6_CITSI	1.8e-19	55.32	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002978mg PE=4 SV=1	[more]
F6GU88_VITVI	2.9e-17	53.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01770 PE=4 SV=...	[more]

BLAST of CU113907 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778693146\|ref\|XP_011653585.1\|	7.4e-38	84.38	PREDICTED: uncharacterized protein LOC101207833 [Cucumis sativus]	[more]
gi\|700199001\|gb\|KGN54159.1\|	7.4e-38	84.38	hypothetical protein Csa_4G290750 [Cucumis sativus]	[more]
gi\|659097647\|ref\|XP_008449737.1\|	2.0e-35	78.13	PREDICTED: uncharacterized protein LOC103491528 [Cucumis melo]	[more]
gi\|641845944\|gb\|KDO64829.1\|	3.4e-19	55.32	hypothetical protein CISIN_1g002978mg [Citrus sinensis]	[more]
gi\|567907465\|ref\|XP_006446046.1\|	3.4e-19	55.32	hypothetical protein CICLE_v10014240mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR007934	Alpha-L-arabinofuranosidase B, arabinose-binding domain

Vocabulary: **Biological Process**
Term	Definition
GO:0046373	L-arabinose metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0046556	alpha-L-arabinofuranosidase activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046373	L-arabinose metabolic process
molecular_function	GO:0046556	alpha-L-arabinofuranosidase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G290750	Csa4G290750	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02NGMVJ	FKNP3UI02NGMVJ	EST
G0137239	G0137239	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007934	Alpha-L-arabinofuranosidase B, arabinose-binding domain	unknown	SSF110221	AbfB domain	coord: 6..92 score: 9.0
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 5..95 score: 1.
None	No IPR available	PANTHER	PTHR31151	FAMILY NOT NAMED	coord: 10..100 score: 3.3
None	No IPR available	PANTHER	PTHR31151:SF0	SUBFAMILY NOT NAMED	coord: 10..100 score: 3.3