CU113497 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU113497
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 20371333 .. 20371723 (+)
Sequence length260
The following sequences are available for this feature:

transcribed_cluster sequence

ACGTAGATGAATCGATTGGAGGAGCTGGATCTGCTTCATGATCGTCCTTAATCTTTTTCACCCATTGGGTTCTTGTAATTCTTGATATTTTGAACATTTCATTTCCATTCTAGGACATGGTTCACAGGAATCGCATTGCTGTTTTCGCATCCGTGTCAAGTTGTACTCCGGAATGAATTCCTACTGTTGTCTCTGTAGTTTGGCCACTTACATACAGGGCCTTTTTTAGGAGTACTGTTCCGGGAAACACCATCAAATTG
Library categoryESTs
gynoecious flower library2
BLAST of CU113497 vs. TrEMBL
Match: A0A0A0L3B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627270 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-19
Identity = 58/86 (67.44%), Postives = 61/86 (70.93%), Query Frame = -2

Query: 2   NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAKTAMRFL*TMS*NGNEMFKISR 61
           NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAK              +  K   
Sbjct: 199 NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAKQQCDSCEPCPRMEMKCSKYQE 258

Query: 62  ITRTQWVKKIKDDHEADPAPPIDSST 121
           +      +KIKDDHEADPAPPIDSST
Sbjct: 259 LQEPNG-EKIKDDHEADPAPPIDSST 283

Query: 122 181
           
Sbjct: 319 283

Query: 182 241
           
Sbjct: 379 283

Query: 242 260
           
Sbjct: 439 283

BLAST of CU113497 vs. NCBI nr
Match: gi|700199919|gb|KGN55077.1| (hypothetical protein Csa_4G627270 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 58/86 (67.44%), Postives = 61/86 (70.93%), Query Frame = -2

Query: 2   NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAKTAMRFL*TMS*NGNEMFKISR 61
           NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAK              +  K   
Sbjct: 199 NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAKQQCDSCEPCPRMEMKCSKYQE 258

Query: 62  ITRTQWVKKIKDDHEADPAPPIDSST 121
           +      +KIKDDHEADPAPPIDSST
Sbjct: 259 LQEPNG-EKIKDDHEADPAPPIDSST 283

Query: 122 181
           
Sbjct: 319 283

Query: 182 241
           
Sbjct: 379 283

Query: 242 260
           
Sbjct: 439 283

BLAST of CU113497 vs. NCBI nr
Match: gi|449456717|ref|XP_004146095.1| (PREDICTED: uncharacterized protein LOC101204381 isoform X1 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 58/86 (67.44%), Postives = 61/86 (70.93%), Query Frame = -2

Query: 2    NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAKTAMRFL*TMS*NGNEMFKISR 61
            NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAK              +  K   
Sbjct: 1230 NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAKQQCDSCEPCPRMEMKCSKYQE 1289

Query: 62   ITRTQWVKKIKDDHEADPAPPIDSST 121
            +      +KIKDDHEADPAPPIDSST
Sbjct: 1290 LQEPNG-EKIKDDHEADPAPPIDSST 1314

Query: 122  181
            
Sbjct: 1350 1314

Query: 182  241
            
Sbjct: 1410 1314

Query: 242  260
            
Sbjct: 1470 1314

BLAST of CU113497 vs. NCBI nr
Match: gi|659127485|ref|XP_008463727.1| (PREDICTED: uncharacterized protein LOC103501805 isoform X1 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 57/93 (61.29%), Postives = 63/93 (67.74%), Query Frame = -2

Query: 2    NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAKTAMRFL*TMS*NGNE-----M 61
            NLMVFPGTVLLKKALYVSGQTTETTVGIH+GVQLDT+ K           N NE      
Sbjct: 1215 NLMVFPGTVLLKKALYVSGQTTETTVGIHAGVQLDTNTKQQC--------NSNEPCPRME 1274

Query: 62   FKISRITRTQW--VKKIKDDHEADPAPPIDSST 121
             K S+    Q    +K KDDHEA+PAPP+DSST
Sbjct: 1275 MKCSKYQELQEHNGEKTKDDHEANPAPPVDSST 1299

Query: 122  181
            
Sbjct: 1335 1299

Query: 182  241
            
Sbjct: 1395 1299

Query: 242  260
            
Sbjct: 1455 1299

BLAST of CU113497 vs. NCBI nr
Match: gi|778695762|ref|XP_011654050.1| (PREDICTED: uncharacterized protein LOC101204381 isoform X2 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-15
Identity = 54/86 (62.79%), Postives = 57/86 (66.28%), Query Frame = -2

Query: 2    NLMVFPGTVLLKKALYVSGQTTETTVGIHSGVQLDTDAKTAMRFL*TMS*NGNEMFKISR 61
            NLMVFPGTVLLKKALYVSGQTTETTV    GVQLDTDAK              +  K   
Sbjct: 1230 NLMVFPGTVLLKKALYVSGQTTETTV----GVQLDTDAKQQCDSCEPCPRMEMKCSKYQE 1289

Query: 62   ITRTQWVKKIKDDHEADPAPPIDSST 121
            +      +KIKDDHEADPAPPIDSST
Sbjct: 1290 LQEPNG-EKIKDDHEADPAPPIDSST 1310

Query: 122  181
            
Sbjct: 1350 1310

Query: 182  241
            
Sbjct: 1410 1310

Query: 242  260
            
Sbjct: 1470 1310

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L3B0_CUCSA1.6e-1967.44Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627270 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700199919|gb|KGN55077.1|1.8e-1967.44hypothetical protein Csa_4G627270 [Cucumis sativus][more]
gi|449456717|ref|XP_004146095.1|1.8e-1967.44PREDICTED: uncharacterized protein LOC101204381 isoform X1 [Cucumis sativus][more]
gi|659127485|ref|XP_008463727.1|1.3e-1761.29PREDICTED: uncharacterized protein LOC103501805 isoform X1 [Cucumis melo][more]
gi|778695762|ref|XP_011654050.1|3.4e-1562.79PREDICTED: uncharacterized protein LOC101204381 isoform X2 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G627270Csa4G627270gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0059575G0059575EST
G0091063G0091063EST