CU113482 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU113482
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Alpha/beta-Hydrolases superfamily protein
Location	Chr4 : 15400056 .. 15400175 (-)
Sequence length	122

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGAACAGCTGATGAAGTTGTTGATTGGTCCCATGGAAAACAACTTTGGGAGCTTTGCAAGCAAAAGTATGAACCTCTATGGCTAAGTGGAGGTGGACATTGCAATCTTGAGCTATACCCAT

Library


Library category	ESTs
gynoecious flower library	3

Homology

[Close]

BLAST of CU113482 vs. Swiss-Prot
Match: AB17B_XENTR (Protein ABHD17B OS=Xenopus tropicalis GN=abhd17b PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-07
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELY 61
           GT DEV+D+SHG  L+E C++  EPLW+ G GH ++ELY
Sbjct: 232 GTEDEVIDFSHGLALFERCQRPVEPLWVEGAGHNDVELY 270

Query: 62   119
           
Sbjct: 292  270

[Close]

BLAST of CU113482 vs. Swiss-Prot
Match: AB17A_BOVIN (Protein ABHD17A OS=Bos taurus GN=ABHD17A PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-07
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELY 61
           GT DEV+D+SHG  L+E C +  EPLW+ G GH ++ELY
Sbjct: 252 GTEDEVIDFSHGLALYERCPKAVEPLWVEGAGHNDIELY 290

Query: 62   119
           
Sbjct: 312  290

[Close]

BLAST of CU113482 vs. Swiss-Prot
Match: AB17A_MOUSE (Protein ABHD17A OS=Mus musculus GN=Abhd17a PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-07
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELY 61
           GT DEV+D+SHG  L+E C +  EPLW+ G GH ++ELY
Sbjct: 252 GTEDEVIDFSHGLALYERCPKAVEPLWVEGAGHNDIELY 290

Query: 62   119
           
Sbjct: 312  290

[Close]

BLAST of CU113482 vs. Swiss-Prot
Match: AB17A_RAT (Protein ABHD17A OS=Rattus norvegicus GN=Abhd17a PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-07
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELY 61
           GT DEV+D+SHG  L+E C +  EPLW+ G GH ++ELY
Sbjct: 252 GTEDEVIDFSHGLALYERCPKAVEPLWVEGAGHNDIELY 290

Query: 62   119
           
Sbjct: 312  290

[Close]

BLAST of CU113482 vs. Swiss-Prot
Match: AB17B_CHICK (Protein ABHD17B OS=Gallus gallus GN=ABHD17B PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-07
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELY 61
           GT DEV+D+SHG  L+E C++  EPLW+ G GH ++ELY
Sbjct: 232 GTEDEVIDFSHGLALFERCQRPVEPLWVEGAGHNDVELY 270

Query: 62   119
           
Sbjct: 292  270

[Close]

BLAST of CU113482 vs. TrEMBL
Match: A0A0A0L0Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G410820 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP
Sbjct: 210 GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 249

Query: 62   121
           
Sbjct: 270  249

[Close]

BLAST of CU113482 vs. TrEMBL
Match: A0A0V0I4X0_SOLCH (Putative alpha/beta hydrolase domain-containing protein 17B-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.5e-16
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GTADEVVD+SHGKQLWELCK+KYEPLWL+GGGHCNLELYP
Sbjct: 207 GTADEVVDYSHGKQLWELCKEKYEPLWLNGGGHCNLELYP 246

Query: 62   121
           
Sbjct: 267  246

[Close]

BLAST of CU113482 vs. TrEMBL
Match: M1CHY4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401026387 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.5e-16
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GTADEVVD+SHGKQLWELCK+KYEPLWL+GGGHCNLELYP
Sbjct: 207 GTADEVVDYSHGKQLWELCKEKYEPLWLNGGGHCNLELYP 246

Query: 62   121
           
Sbjct: 267  246

[Close]

BLAST of CU113482 vs. TrEMBL
Match: A0A0D3CSV9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.5e-16
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GTADEVVDWSHGKQLWEL K+KYEPLW+SGGGHCNLELYP
Sbjct: 211 GTADEVVDWSHGKQLWELSKEKYEPLWVSGGGHCNLELYP 250

Query: 62   121
           
Sbjct: 271  250

[Close]

BLAST of CU113482 vs. TrEMBL
Match: A0A078IJ53_BRANA (BnaA02g30230D protein OS=Brassica napus GN=BnaA02g30230D PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.5e-16
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GTADEVVDWSHGKQLWEL K+KYEPLW+SGGGHCNLELYP
Sbjct: 213 GTADEVVDWSHGKQLWELSKEKYEPLWVSGGGHCNLELYP 252

Query: 62   121
           
Sbjct: 273  252

[Close]

BLAST of CU113482 vs. NCBI nr
Match: gi|778694559|ref|XP_011653830.1| (PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP
Sbjct: 210 GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 249

Query: 62   121
           
Sbjct: 270  249

[Close]

BLAST of CU113482 vs. NCBI nr
Match: gi|659086749|ref|XP_008444091.1| (PREDICTED: alpha/beta hydrolase domain-containing protein 17B isoform X1 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP
Sbjct: 210 GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 249

Query: 62   121
           
Sbjct: 270  249

[Close]

BLAST of CU113482 vs. NCBI nr
Match: gi|1009126107|ref|XP_015879973.1| (PREDICTED: protein ABHD17B-like [Ziziphus jujuba])

HSP 1 Score: 93.6 bits (231), Expect = 8.5e-17
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GT+DEVVDWSHGKQLWELC +KYEPLW+SGGGHCNLELYP
Sbjct: 210 GTSDEVVDWSHGKQLWELCNEKYEPLWISGGGHCNLELYP 249

Query: 62   121
           
Sbjct: 270  249

[Close]

BLAST of CU113482 vs. NCBI nr
Match: gi|565383047|ref|XP_006357838.1| (PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Solanum tuberosum])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-16
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GTADEVVD+SHGKQLWELCK+KYEPLWL+GGGHCNLELYP
Sbjct: 207 GTADEVVDYSHGKQLWELCKEKYEPLWLNGGGHCNLELYP 246

Query: 62   121
           
Sbjct: 267  246

[Close]

BLAST of CU113482 vs. NCBI nr
Match: gi|923671545|ref|XP_013650845.1| (PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like, partial [Brassica napus])

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-16
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 2


Query: 2   GTADEVVDWSHGKQLWELCKQKYEPLWLSGGGHCNLELYP 61
           GTADEVVDWSHGKQLWEL K+KYEPLW+SGGGHCNLELYP
Sbjct: 213 GTADEVVDWSHGKQLWELSKEKYEPLWVSGGGHCNLELYP 252

Query: 62   121
           
Sbjct: 273  252

The following BLAST results are available for this feature:

BLAST of CU113482 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AB17B_XENTR	2.7e-07	56.41	Protein ABHD17B OS=Xenopus tropicalis GN=abhd17b PE=2 SV=1	[more]
AB17A_BOVIN	2.7e-07	56.41	Protein ABHD17A OS=Bos taurus GN=ABHD17A PE=2 SV=1	[more]
AB17A_MOUSE	2.7e-07	56.41	Protein ABHD17A OS=Mus musculus GN=Abhd17a PE=1 SV=1	[more]
AB17A_RAT	2.7e-07	56.41	Protein ABHD17A OS=Rattus norvegicus GN=Abhd17a PE=2 SV=1	[more]
AB17B_CHICK	2.7e-07	56.41	Protein ABHD17B OS=Gallus gallus GN=ABHD17B PE=2 SV=1	[more]

BLAST of CU113482 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Q0_CUCSA	1.2e-17	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G410820 PE=4 SV=1	[more]
A0A0V0I4X0_SOLCH	6.5e-16	92.50	Putative alpha/beta hydrolase domain-containing protein 17B-like OS=Solanum chac...	[more]
M1CHY4_SOLTU	6.5e-16	92.50	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401026387 PE=4 SV=1	[more]
A0A0D3CSV9_BRAOL	8.5e-16	92.50	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078IJ53_BRANA	8.5e-16	92.50	BnaA02g30230D protein OS=Brassica napus GN=BnaA02g30230D PE=4 SV=1	[more]

BLAST of CU113482 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694559\|ref\|XP_011653830.1\|	2.6e-18	100.00	PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Cucumis sativus]	[more]
gi\|659086749\|ref\|XP_008444091.1\|	2.6e-18	100.00	PREDICTED: alpha/beta hydrolase domain-containing protein 17B isoform X1 [Cucumi...	[more]
gi\|1009126107\|ref\|XP_015879973.1\|	8.5e-17	90.00	PREDICTED: protein ABHD17B-like [Ziziphus jujuba]	[more]
gi\|565383047\|ref\|XP_006357838.1\|	1.4e-16	92.50	PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Solanum tuberosum...	[more]
gi\|923671545\|ref\|XP_013650845.1\|	1.9e-16	92.50	PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like, partial [Bra...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G410820	Csa4G410820	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0089183	G0089183	EST
G0134374	G0134374	EST
G0137264	G0137264	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12277	UNCHARACTERIZED	coord: 2..41 score: 1.1
None	No IPR available	PANTHER	PTHR12277:SF83	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN	coord: 2..41 score: 1.1