CU112286 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU112286
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12541273 .. 12541624 (-)
Sequence length352
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CTTTTCCTAACCCGGAGTGACCCTCTTCTTCCTCCTTTGCTACATGAACAAAAACTTCAAAAGTATTTAACATTTCTCCATTAAATCAATCAATTTTCACCGAGGAGTAGATGAGTCTTGTGAACCAGAAACATGCGTAGAATCCAATTGTACCAGTCAGGACAAAGAAAGCGTATGAACCAATCAGCATATACCCAAAGTATAACATCCCTGACACCGGCTTTGTTATATCAAGCTTTTGTGAAGAAGTAGAAGGCAGCATAGAGGAAGAGGTAGAGTGCAGAGGAGCCTGAAGTCAGATATGATCTCCACCACAATGGTAGTCCTCACTGCCACAGTTGGAAGTAGCAGA
Homology
[Close]
BLAST of CU112286 vs. Swiss-Prot
Match: TMN8_ARATH (Transmembrane 9 superfamily member 8 OS=Arabidopsis thaliana GN=TMN8 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 45/50 (90.00%), Postives = 43/50 (86.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL ITK VS MLYFGYMLI SYAFFVLTGTIGFYAC WFTRLIYSSVKID
Sbjct: 599 KLQITKLVSAMLYFGYMLIASYAFFVLTGTIGFYACLWFTRLIYSSVKID 648

Query: 149  208
           
Sbjct: 659  648

Query: 209  239
           
Sbjct: 719  648


HSP 2 Score: 36.6 bits (83), Expect = 2.2e-01
Identity = 16/23 (69.57%), Postives = 14/23 (60.87%), Query Frame = -3 

Query: 282 CYFQLWQ*GLPLWWRSYLTSGSS 341
           CYFQL       WWRSYLTSGSS
Sbjct: 562 CYFQLCSEDYLWWWRSYLTSGSS 584

Query: 342  351
           
Sbjct: 622  584

[Close]
BLAST of CU112286 vs. Swiss-Prot
Match: TMN9_ARATH (Transmembrane 9 superfamily member 9 OS=Arabidopsis thaliana GN=TMN9 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 45/50 (90.00%), Postives = 43/50 (86.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL ITK VS MLYFGYMLI SYAFFVLTGTIGFYAC WFTRLIYSSVKID
Sbjct: 595 KLQITKLVSAMLYFGYMLIASYAFFVLTGTIGFYACLWFTRLIYSSVKID 644

Query: 149  208
           
Sbjct: 655  644

Query: 209  239
           
Sbjct: 715  644


HSP 2 Score: 36.6 bits (83), Expect = 2.2e-01
Identity = 16/23 (69.57%), Postives = 14/23 (60.87%), Query Frame = -3 

Query: 282 CYFQLWQ*GLPLWWRSYLTSGSS 341
           CYFQL       WWRSYLTSGSS
Sbjct: 558 CYFQLCSEDYLWWWRSYLTSGSS 580

Query: 342  351
           
Sbjct: 618  580

[Close]
BLAST of CU112286 vs. Swiss-Prot
Match: TMN7_ARATH (Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL+ITK VSGMLYFGYM+I SYAFFVLTGTIGFYACFWF R IYSSVKID
Sbjct: 592 KLEITKLVSGMLYFGYMIIISYAFFVLTGTIGFYACFWFVRKIYSSVKID 641

Query: 149  208
           
Sbjct: 652  641

Query: 209  239
           
Sbjct: 712  641


HSP 2 Score: 34.7 bits (78), Expect = 8.5e-01
Identity = 14/23 (60.87%), Postives = 14/23 (60.87%), Query Frame = -3 

Query: 282 CYFQLWQ*GLPLWWRSYLTSGSS 341
           CYFQL       WWR+YLT+GSS
Sbjct: 555 CYFQLCSEDYNWWWRAYLTAGSS 577

Query: 342  351
           
Sbjct: 615  577

[Close]
BLAST of CU112286 vs. Swiss-Prot
Match: TMN10_ARATH (Transmembrane 9 superfamily member 10 OS=Arabidopsis thaliana GN=TMN10 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-17
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL+ITK VS +LYFGYMLI SY FFV TG IGFYACFWFTRLIYSSVKID
Sbjct: 588 KLEITKLVSAVLYFGYMLIVSYVFFVFTGAIGFYACFWFTRLIYSSVKID 637

Query: 149  208
           
Sbjct: 648  637

Query: 209  239
           
Sbjct: 708  637


HSP 2 Score: 37.4 bits (85), Expect = 1.3e-01
Identity = 16/23 (69.57%), Postives = 14/23 (60.87%), Query Frame = -3 

Query: 282 CYFQLWQ*GLPLWWRSYLTSGSS 341
           CYFQL       WWRSYLTSGSS
Sbjct: 551 CYFQLCSEDYQWWWRSYLTSGSS 573

Query: 342  351
           
Sbjct: 611  573

[Close]
BLAST of CU112286 vs. Swiss-Prot
Match: TMN6_ARATH (Transmembrane 9 superfamily member 6 OS=Arabidopsis thaliana GN=TMN6 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.2e-16
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL+I+K VSG+LYFGYM+I SY+FFVLTG+IGFYAC WF R IYSSVKID
Sbjct: 588 KLEISKLVSGVLYFGYMIIISYSFFVLTGSIGFYACLWFVRKIYSSVKID 637

Query: 149  208
           
Sbjct: 648  637

Query: 209  239
           
Sbjct: 708  637


HSP 2 Score: 30.8 bits (68), Expect = 1.2e+01
Identity = 14/23 (60.87%), Postives = 13/23 (56.52%), Query Frame = -3 

Query: 282 CYFQLWQ*GLPLWWRSYLTSGSS 341
           CYFQL        WR+YLTSGSS
Sbjct: 551 CYFQLCSEDYNWCWRAYLTSGSS 573

Query: 342  351
           
Sbjct: 611  573

[Close]
BLAST of CU112286 vs. TrEMBL
Match: A0A0A0LTQ4_CUCSA (Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 589 KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 638

Query: 149  208
           
Sbjct: 649  638

Query: 209  239
           
Sbjct: 709  638

[Close]
BLAST of CU112286 vs. TrEMBL
Match: A0A0A0LTQ4_CUCSA (Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 1.9e+01
Identity = 16/23 (69.57%), Postives = 16/23 (69.57%), Query Frame = -3 

Query: 282 CYFQLWQ*GLPLWWRSYLTSGSS 341
           CYFQL       WWRSYLTSGSS
Sbjct: 552 CYFQLCSEDYHWWWRSYLTSGSS 574

Query: 342  351
           
Sbjct: 612  574


HSP 2 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KLDITKPVSG+LYFGYMLI SYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 495 KLDITKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 544

Query: 149  208
           
Sbjct: 555  544

Query: 209  239
           
Sbjct: 615  544

[Close]
BLAST of CU112286 vs. TrEMBL
Match: A0A0V0IL33_SOLCH (Transmembrane 9 superfamily member OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 36.6 bits (83), Expect = 2.5e+01
Identity = 16/23 (69.57%), Postives = 16/23 (69.57%), Query Frame = -3 

Query: 282 CYFQLWQ*GLPLWWRSYLTSGSS 341
           CYFQL       WWRSYLTSGSS
Sbjct: 458 CYFQLCSEDYLWWWRSYLTSGSS 480

Query: 342  351
           
Sbjct: 518  480


HSP 2 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL+ITKPVSGMLYFGYMLI SYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 592 KLEITKPVSGMLYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 641

Query: 149  208
           
Sbjct: 652  641

Query: 209  239
           
Sbjct: 712  641

[Close]
BLAST of CU112286 vs. TrEMBL
Match: K4CB31_SOLLC (Transmembrane 9 superfamily member OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 36.6 bits (83), Expect = 2.5e+01
Identity = 16/23 (69.57%), Postives = 16/23 (69.57%), Query Frame = -3 

Query: 282 CYFQLWQ*GLPLWWRSYLTSGSS 341
           CYFQL       WWRSYLTSGSS
Sbjct: 555 CYFQLCSEDYLWWWRSYLTSGSS 577

Query: 342  351
           
Sbjct: 615  577


HSP 2 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KLDITKPVSG+LYFGYMLI SYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 593 KLDITKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 642

Query: 149  208
           
Sbjct: 653  642

Query: 209  239
           
Sbjct: 713  642

[Close]
BLAST of CU112286 vs. TrEMBL
Match: M1CHH8_SOLTU (Transmembrane 9 superfamily member OS=Solanum tuberosum GN=PGSC0003DMG402026272 PE=3 SV=1)

HSP 1 Score: 36.6 bits (83), Expect = 2.5e+01
Identity = 16/23 (69.57%), Postives = 16/23 (69.57%), Query Frame = -3 

Query: 282 CYFQLWQ*GLPLWWRSYLTSGSS 341
           CYFQL       WWRSYLTSGSS
Sbjct: 556 CYFQLCSEDYLWWWRSYLTSGSS 578

Query: 342  351
           
Sbjct: 616  578


HSP 2 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KLDITKPVSG+LYFGYMLI SYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 593 KLDITKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 642

Query: 149  208
           
Sbjct: 653  642

Query: 209  239
           
Sbjct: 713  642

[Close]
BLAST of CU112286 vs. NCBI nr
Match: gi|449457879|ref|XP_004146675.1| (PREDICTED: transmembrane 9 superfamily member 9-like [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 589 KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 638

Query: 149  208
           
Sbjct: 649  638

Query: 209  239
           
Sbjct: 709  638

[Close]
BLAST of CU112286 vs. NCBI nr
Match: gi|659086301|ref|XP_008443860.1| (PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-19
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL+ITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 589 KLEITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 638

Query: 149  208
           
Sbjct: 649  638

Query: 209  239
           
Sbjct: 709  638

[Close]
BLAST of CU112286 vs. NCBI nr
Match: gi|747073975|ref|XP_011083969.1| (PREDICTED: transmembrane 9 superfamily member 8 [Sesamum indicum])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL+ITKPVSG+LYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 589 KLNITKPVSGILYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 638

Query: 149  208
           
Sbjct: 649  638

Query: 209  239
           
Sbjct: 709  638

[Close]
BLAST of CU112286 vs. NCBI nr
Match: gi|747065530|ref|XP_011079404.1| (PREDICTED: transmembrane 9 superfamily member 9-like [Sesamum indicum])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL+ITKPVSG+LYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 592 KLNITKPVSGILYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 641

Query: 149  208
           
Sbjct: 652  641

Query: 209  239
           
Sbjct: 712  641

[Close]
BLAST of CU112286 vs. NCBI nr
Match: gi|902150717|gb|KNA05446.1| (hypothetical protein SOVF_190210 [Spinacia oleracea])

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -1 

Query: 89  KLDITKPVSGMLYFGYMLIGSYAFFVLTGTIGFYACFWFTRLIYSSVKID 148
           KL+ITKPVSGMLYFGYMLI SYAFFVLTGTIGFYACFWFTRLIYSSVKID
Sbjct: 588 KLEITKPVSGMLYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 637

Query: 149  208
           
Sbjct: 648  637

Query: 209  239
           
Sbjct: 708  637

The following BLAST results are available for this feature:
BLAST of CU112286 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TMN8_ARATH1.2e-1890.00Transmembrane 9 superfamily member 8 OS=Arabidopsis thaliana GN=TMN8 PE=2 SV=1[more]
TMN9_ARATH1.2e-1890.00Transmembrane 9 superfamily member 9 OS=Arabidopsis thaliana GN=TMN9 PE=2 SV=1[more]
TMN7_ARATH2.6e-1888.00Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1[more]
TMN10_ARATH2.9e-1784.00Transmembrane 9 superfamily member 10 OS=Arabidopsis thaliana GN=TMN10 PE=2 SV=1[more]
TMN6_ARATH7.2e-1678.00Transmembrane 9 superfamily member 6 OS=Arabidopsis thaliana GN=TMN6 PE=2 SV=1[more]
BLAST of CU112286 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTQ4_CUCSA1.5e-20100.00Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1[more]
A0A0A0LTQ4_CUCSA1.9e+0169.57Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1[more]
A0A0V0IL33_SOLCH2.5e+0169.57Transmembrane 9 superfamily member OS=Solanum chacoense PE=3 SV=1[more]
K4CB31_SOLLC2.5e+0169.57Transmembrane 9 superfamily member OS=Solanum lycopersicum PE=3 SV=1[more]
M1CHH8_SOLTU2.5e+0169.57Transmembrane 9 superfamily member OS=Solanum tuberosum GN=PGSC0003DMG402026272 ... [more]
BLAST of CU112286 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457879|ref|XP_004146675.1|1.4e-19100.00PREDICTED: transmembrane 9 superfamily member 9-like [Cucumis sativus][more]
gi|659086301|ref|XP_008443860.1|4.1e-1998.00PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis melo][more]
gi|747073975|ref|XP_011083969.1|1.5e-1896.00PREDICTED: transmembrane 9 superfamily member 8 [Sesamum indicum][more]
gi|747065530|ref|XP_011079404.1|1.5e-1896.00PREDICTED: transmembrane 9 superfamily member 9-like [Sesamum indicum][more]
gi|902150717|gb|KNA05446.1|2.0e-1896.00hypothetical protein SOVF_190210 [Spinacia oleracea][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR004240EMP70
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G256720Csa1G256720gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02NY24EFKNP3UI02NY24EEST
G0073222G0073222EST
G0082055G0082055EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004240Nonaspanin (TM9SF)PANTHERPTHR10766TRANSMEMBRANE 9 SUPERFAMILY PROTEINcoord: 40..89
score: 3.1
NoneNo IPR availablePANTHERPTHR10766:SF46ENDOMEMBRANE FAMILY PROTEIN 70coord: 40..89
score: 3.1