CU111758 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU111758
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTranscription factor VIP1
LocationChr7 : 11298221 .. 11298583 (-)
Sequence length370
The following sequences are available for this feature:

transcribed_cluster sequence

GCCGCAGGCCAAGTTGCATCAATCAATGGAAATCCTTTCAACCGACCTCCGCAATATACTTCATCCCGACCACCTGTACACCATTTTAGTAGCTCCCATGCTCAGCAGGGTCAACAGCAGCCACCACCCATGTTGGCTACCAACCAGCAGCAATCAGACCCGAAATGGACAAACTCCTCTCAGCTTCTCAGTCGAAGTCCCGACGGACGAAACAAAGCCTTAGAAGATGTCTGTACATATAAATATTATCTAGCAAACGAGGTTAATTGGTTTTTTTACTAATCTATTTTCTTGTACATTATTCTTATACATATATATATATATCTTATATGCATATTAGGTGTTGTTTAAATAAAATAACTTCGACTAC
BLAST of CU111758 vs. TrEMBL
Match: A0A0A0K9Q8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G324150 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-33
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 1

Query: 1   AAGQVASINGNPFNRPPQYTSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSS 60
           AAGQVASINGNPFNRPPQYTSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSS
Sbjct: 279 AAGQVASINGNPFNRPPQYTSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSS 338

Query: 61  QLLSRSPDGRNK 120
           QLLSRSPDG  K
Sbjct: 339 QLLSRSPDGETK 350

Query: 121 180
           
Sbjct: 399 350

Query: 181 217
           
Sbjct: 459 350

BLAST of CU111758 vs. NCBI nr
Match: gi|449443774|ref|XP_004139652.1| (PREDICTED: transcription factor VIP1-like [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 4.9e-31
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 1

Query: 1   AAGQVASINGNPFNRPPQYTSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSS 60
           AAGQVASINGNPFNRPPQYTSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSS
Sbjct: 279 AAGQVASINGNPFNRPPQYTSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSS 338

Query: 61  QLLSRSPDGRNK 120
           QLLSRSPDG  K
Sbjct: 339 QLLSRSPDGETK 350

Query: 121 180
           
Sbjct: 399 350

Query: 181 217
           
Sbjct: 459 350

BLAST of CU111758 vs. NCBI nr
Match: gi|659123141|ref|XP_008461512.1| (PREDICTED: transcription factor VIP1 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-28
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1   AAGQVASINGNPFNRPPQYTSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSS 60
           AAGQVASINGNPFNRP QY SSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSS
Sbjct: 279 AAGQVASINGNPFNRPLQYPSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSS 338

Query: 61  QLLSRSPDGRNK 120
            LLSRSPDG+ K
Sbjct: 339 LLLSRSPDGQAK 350

Query: 121 180
           
Sbjct: 399 350

Query: 181 217
           
Sbjct: 459 350

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K9Q8_CUCSA1.6e-3397.22Uncharacterized protein OS=Cucumis sativus GN=Csa_7G324150 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449443774|ref|XP_004139652.1|4.9e-3197.22PREDICTED: transcription factor VIP1-like [Cucumis sativus][more]
gi|659123141|ref|XP_008461512.1|3.0e-2893.06PREDICTED: transcription factor VIP1 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa7G324150Csa7G324150gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0118209G0118209EST
H0067086H0067086EST
H0082821H0082821EST