CU111468 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU111468
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	SAMT
Location	Chr7 : 5341093 .. 5342428 (-)
Sequence length	273

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGCAAACGAGGCGGCGGCGGAGGCTTACCGGAAGCAATTTCAGACGGACTTGGCAGGGTTTTCTGTGGGCCAGGGCTCAGGAACTGAAGAGAGGTGGGTCCATGTTCCTTGTCTGCTTGGGCCGGACCTCACTCGACCCCACCGACCAAGGCGGAGCCGGCCTCCTCTTTGGGACCCACTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTGATAAGCAATGAGAAACGTGATAGCTTCAACATTCCAGTGTATGCACCGAGCTTACA

Library


Library category	ESTs
hermaphrodite flower library	3

Homology

[Close]

BLAST of CU111468 vs. Swiss-Prot
Match: IAMT1_ARATH (Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-14
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 3


Query: 27  TGSNFRRTWQG----FLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFR 86
           T + ++R +Q     FL ARA E+KRGG+MFLVCLGRTS+DPTDQGGAGLLFGTHF+
Sbjct: 204 TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQ 260

Query: 87   146
           
Sbjct: 264  260

Query: 147  186
           
Sbjct: 324  260

HSP 2 Score: 68.9 bits (167), Expect = 3.1e-11
Identity = 38/90 (42.22%), Postives = 44/90 (48.89%), Query Frame = 2


Query: 2   ANEAAAEAYRKQFQTDLAGFSVGQGSGTEERWVHVPCLLGPDLTXXXXXXXXXXXLWDPL 61
           A E    AY++QFQ DLA F   + +  +         LG                    
Sbjct: 200 AGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHF 259

Query: 62  QDAWDDLVQEGLISNEKRDSFNIPVYAPSL 121
           QDAWDDLV+EGL++ EKRD FNIPVYAPSL
Sbjct: 260 QDAWDDLVREGLVAAEKRDGFNIPVYAPSL 289

Query: 122  181
           
Sbjct: 320  289

Query: 182  241
           
Sbjct: 380  289

Query: 242  272
           
Sbjct: 440  289

[Close]

BLAST of CU111468 vs. Swiss-Prot
Match: IAMT1_ORYSJ (Indole-3-acetate O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=IAMT1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-12
Identity = 41/90 (45.56%), Postives = 45/90 (50.00%), Query Frame = 2


Query: 2   ANEAAAEAYRKQFQTDLAGFSVGQGSGTEERWVHVPCLLGPDLTXXXXXXXXXXXLWDPL 61
           A EA A AY++QFQ DLA F   +    +         LG                    
Sbjct: 217 ATEAVAAAYKRQFQADLARFLRSRAREMKRGGAMFLACLGRSSGDPADQGGAGLLFGTHF 276

Query: 62  QDAWDDLVQEGLISNEKRDSFNIPVYAPSL 121
           QDAWDDLVQEG++  EKRDSFNIPVYAPSL
Sbjct: 277 QDAWDDLVQEGVVEGEKRDSFNIPVYAPSL 306

Query: 122  181
           
Sbjct: 337  306

Query: 182  241
           
Sbjct: 397  306

Query: 242  272
           
Sbjct: 457  306

[Close]

BLAST of CU111468 vs. TrEMBL
Match: A0A0A0K2W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G081680 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 3


Query: 39  FRRTWQGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFR 98
           F+    GFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHF+
Sbjct: 211 FQTDLAGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFQ 259

Query: 99   158
           
Sbjct: 271  259

Query: 159  186
           
Sbjct: 331  259

[Close]

BLAST of CU111468 vs. TrEMBL
Match: A0A0A0K2W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G081680 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-16
Identity = 52/90 (57.78%), Postives = 54/90 (60.00%), Query Frame = 2


Query: 2   ANEAAAEAYRKQFQTDLAGFSVGQGSGTEERWVHVPCLLGPDLTXXXXXXXXXXXLWDPL 61
           ANEAAAEAYRKQFQTDLAGF   +    +         LG                    
Sbjct: 199 ANEAAAEAYRKQFQTDLAGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHF 258

Query: 62  QDAWDDLVQEGLISNEKRDSFNIPVYAPSL 121
           QDAWDDLVQEGLISNEKRDSFNIPVYAPSL
Sbjct: 259 QDAWDDLVQEGLISNEKRDSFNIPVYAPSL 288

Query: 122  181
           
Sbjct: 319  288

Query: 182  241
           
Sbjct: 379  288

Query: 242  272
           
Sbjct: 439  288

HSP 2 Score: 84.3 bits (207), Expect = 8.0e-14
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 3


Query: 39  FRRTWQGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFR 98
           F+    GFL AR+QE+KRGGSMFLVCLGRTS+DPTDQGGAGLLFGTHF+
Sbjct: 211 FQTDLAGFLRARSQEMKRGGSMFLVCLGRTSVDPTDQGGAGLLFGTHFQ 259

Query: 99   158
           
Sbjct: 271  259

Query: 159  186
           
Sbjct: 331  259

[Close]

BLAST of CU111468 vs. TrEMBL
Match: A0A067KSN8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00958 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.8e-12
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 2


Query: 2   ANEAAAEAYRKQFQTDLAGFSVGQGSGTEERWVHVPCLLGPDLTXXXXXXXXXXXLWDPL 61
           A+E+ + AY+KQFQTDLAGF   +    +         LG                    
Sbjct: 199 ASESTSNAYKKQFQTDLAGFLRARSQEMKRGGSMFLVCLGRTSVDPTDQGGAGLLFGTHF 258

Query: 62  QDAWDDLVQEGLISNEKRDSFNIPVYAPSL 121
           QDAWDDLVQEGLI++E+RD+FNIPVYAPSL
Sbjct: 259 QDAWDDLVQEGLITSEERDNFNIPVYAPSL 288

Query: 122  181
           
Sbjct: 319  288

Query: 182  241
           
Sbjct: 379  288

Query: 242  272
           
Sbjct: 439  288

HSP 2 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 3


Query: 39  FRRTWQGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFR 98
           F+    GFL AR+QE+KRGGSMFLVCLGRTS+DPTDQGGAGLLFGTH++
Sbjct: 212 FQTDLAGFLRARSQEMKRGGSMFLVCLGRTSMDPTDQGGAGLLFGTHYQ 260

Query: 99   158
           
Sbjct: 272  260

Query: 159  186
           
Sbjct: 332  260

[Close]

BLAST of CU111468 vs. TrEMBL
Match: B9SYY5_RICCO (Benzoate carboxyl methyltransferase, putative OS=Ricinus communis GN=RCOM_0546890 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 45/90 (50.00%), Postives = 52/90 (57.78%), Query Frame = 2


Query: 2   ANEAAAEAYRKQFQTDLAGFSVGQGSGTEERWVHVPCLLGPDLTXXXXXXXXXXXLWDPL 61
           A+E+ A AY+KQFQTDLAGF   +    +         LG                    
Sbjct: 200 ASESTANAYKKQFQTDLAGFLRARSQEMKRGGSMFLVCLGRTSMDPTDQGGAGLLFGTHY 259

Query: 62  QDAWDDLVQEGLISNEKRDSFNIPVYAPSL 121
           QDAWDDLVQEGLI++EKRDSFNIPVYAPSL
Sbjct: 260 QDAWDDLVQEGLITSEKRDSFNIPVYAPSL 289

Query: 122  181
           
Sbjct: 320  289

Query: 182  241
           
Sbjct: 380  289

Query: 242  272
           
Sbjct: 440  289

HSP 2 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 3


Query: 39  FRRTWQGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFR 98
           FR    GFL +R+ ELKRGGSMFLVCLGRTS+DPTDQGGAGLLFGTHF+
Sbjct: 208 FREDLAGFLRSRSVELKRGGSMFLVCLGRTSVDPTDQGGAGLLFGTHFQ 256

Query: 99   158
           
Sbjct: 268  256

Query: 159  186
           
Sbjct: 328  256

[Close]

BLAST of CU111468 vs. TrEMBL
Match: V7BN94_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G048600g PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 44/90 (48.89%), Postives = 50/90 (55.56%), Query Frame = 2


Query: 2   ANEAAAEAYRKQFQTDLAGFSVGQGSGTEERWVHVPCLLGPDLTXXXXXXXXXXXLWDPL 61
           A+E  A AYRKQF+ DLAGF   +    +         LG                    
Sbjct: 196 ASEITANAYRKQFREDLAGFLRSRSVELKRGGSMFLVCLGRTSVDPTDQGGAGLLFGTHF 255

Query: 62  QDAWDDLVQEGLISNEKRDSFNIPVYAPSL 121
           QDAWDDLVQEGLI++EKRDSFNIPVYAPSL
Sbjct: 256 QDAWDDLVQEGLITSEKRDSFNIPVYAPSL 285

Query: 122  181
           
Sbjct: 316  285

Query: 182  241
           
Sbjct: 376  285

Query: 242  272
           
Sbjct: 436  285

HSP 2 Score: 82.8 bits (203), Expect = 2.3e-13
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = 2


Query: 2   ANEAAAEAYRKQFQTDLAGFSVGQGSGTEERWVHVPCLLGPDLTXXXXXXXXXXXLWDPL 61
           ANE+ A+AY+KQFQTDLAGF   +    +         LG                    
Sbjct: 199 ANESTAKAYKKQFQTDLAGFLRSRSKEMKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHF 258

Query: 62  QDAWDDLVQEGLISNEKRDSFNIPVYAPSL 121
           QDAWDDL+QEGLIS+EKRD+FNIPVYAPSL
Sbjct: 259 QDAWDDLIQEGLISSEKRDNFNIPVYAPSL 288

Query: 122  181
           
Sbjct: 319  288

Query: 182  241
           
Sbjct: 379  288

Query: 242  272
           
Sbjct: 439  288

[Close]

BLAST of CU111468 vs. NCBI nr
Match: gi|449467394|ref|XP_004151408.1| (PREDICTED: indole-3-acetate O-methyltransferase 1 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 3


Query: 39  FRRTWQGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFR 98
           F+    GFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHF+
Sbjct: 211 FQTDLAGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFQ 259

Query: 99   158
           
Sbjct: 271  259

Query: 159  186
           
Sbjct: 331  259

[Close]

BLAST of CU111468 vs. NCBI nr
Match: gi|659093771|ref|XP_008447710.1| (PREDICTED: indole-3-acetate O-methyltransferase 1 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 9.4e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3


Query: 60  FLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFR 119
           FLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHF+
Sbjct: 218 FLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFQ 259

Query: 120  179
           
Sbjct: 278  259

Query: 180  186
           
Sbjct: 338  259

[Close]

BLAST of CU111468 vs. NCBI nr
Match: gi|729356523|ref|XP_010545250.1| (PREDICTED: indole-3-acetate O-methyltransferase 1 [Tarenaya hassleriana])

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 3


Query: 39  FRRTWQGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFR 98
           F+    GFL AR QELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHF+
Sbjct: 213 FQADLGGFLRARGQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFQ 261

Query: 99   158
           
Sbjct: 273  261

Query: 159  186
           
Sbjct: 333  261

[Close]

BLAST of CU111468 vs. NCBI nr
Match: gi|802588495|ref|XP_012070919.1| (PREDICTED: indole-3-acetate O-methyltransferase 1 [Jatropha curcas])

HSP 1 Score: 85.1 bits (209), Expect = 6.8e-14
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 3


Query: 39  FRRTWQGFLWARAQELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFR 98
           F+    GFL AR+QE+KRGGSMFLVCLGRTS+DPTDQGGAGLLFGTHF+
Sbjct: 211 FQTDLAGFLRARSQEMKRGGSMFLVCLGRTSVDPTDQGGAGLLFGTHFQ 259

Query: 99   158
           
Sbjct: 271  259

Query: 159  186
           
Sbjct: 331  259

[Close]

BLAST of CU111468 vs. NCBI nr
Match: gi|703097335|ref|XP_010096089.1| (Indole-3-acetate O-methyltransferase 1 [Morus notabilis])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = 2


Query: 2   ANEAAAEAYRKQFQTDLAGFSVGQGSGTEERWVHVPCLLGPDLTXXXXXXXXXXXLWDPL 61
           ANE+ A+AY+KQFQTDLAGF   +    +         LG                    
Sbjct: 199 ANESTAKAYKKQFQTDLAGFLRSRSKEMKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHF 258

Query: 62  QDAWDDLVQEGLISNEKRDSFNIPVYAPSL 121
           QDAWDDL+QEGLIS+EKRD+FNIPVYAPSL
Sbjct: 259 QDAWDDLIQEGLISSEKRDNFNIPVYAPSL 288

Query: 122  181
           
Sbjct: 319  288

Query: 182  241
           
Sbjct: 379  288

Query: 242  272
           
Sbjct: 439  288

The following BLAST results are available for this feature:

BLAST of CU111468 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAMT1_ARATH	2.3e-14	68.42	Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=...	[more]
IAMT1_ORYSJ	1.3e-12	45.56	Indole-3-acetate O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=IAMT1 ...	[more]

BLAST of CU111468 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2W3_CUCSA	2.3e-16	87.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G081680 PE=4 SV=1	[more]
A0A0A0K2W3_CUCSA	5.0e-16	57.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G081680 PE=4 SV=1	[more]
A0A067KSN8_JATCU	9.8e-12	46.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00958 PE=4 SV=1	[more]
B9SYY5_RICCO	1.2e-12	50.00	Benzoate carboxyl methyltransferase, putative OS=Ricinus communis GN=RCOM_054689...	[more]
V7BN94_PHAVU	1.3e-11	48.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G048600g PE=4 SV=1	[more]

BLAST of CU111468 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449467394\|ref\|XP_004151408.1\|	1.9e-16	87.76	PREDICTED: indole-3-acetate O-methyltransferase 1 [Cucumis sativus]	[more]
gi\|659093771\|ref\|XP_008447710.1\|	9.4e-16	97.62	PREDICTED: indole-3-acetate O-methyltransferase 1 [Cucumis melo]	[more]
gi\|729356523\|ref\|XP_010545250.1\|	3.0e-14	83.67	PREDICTED: indole-3-acetate O-methyltransferase 1 [Tarenaya hassleriana]	[more]
gi\|802588495\|ref\|XP_012070919.1\|	6.8e-14	79.59	PREDICTED: indole-3-acetate O-methyltransferase 1 [Jatropha curcas]	[more]
gi\|703097335\|ref\|XP_010096089.1\|	1.2e-13	50.00	Indole-3-acetate O-methyltransferase 1 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR005299	MeTrfase_7

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008168	methyltransferase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G081680	Csa7G081680	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0008687	H0008687	EST
H0158475	H0158475	EST
H0189765	H0189765	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005299	SAM dependent carboxyl methyltransferase	PFAM	PF03492	Methyltransf_7	coord: 4..91 score: 1.5
None	No IPR available	PANTHER	PTHR31009	S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN	coord: 2..91 score: 1.8
None	No IPR available	PANTHER	PTHR31009:SF15	INDOLE-3-ACETATE O-METHYLTRANSFERASE 1	coord: 2..91 score: 1.8