CU111388 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU111388
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 5097426 .. 5097787 (-)
Sequence length256
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CAGCATCTATGCAGCTTTTCTATGGTCTTGCTTCGCTTTTCGAATGTATTTCTCGATTCCGGTTTTGAGCAAAAGAGCTCTGTTTTCTGGGTTCCTGACTACAAGATTTCGTATCATGTTACAGGAATTCCTTTGCATTTGTTGAGCTGAAGGGAACTTCTGCATAGCTTGAATGGCAAGATCTCCAGCTCCAGCTTCAATTGCCTGTGTTGCATTTTCTGGAGATCTCAACGTAAGCACTGATACAACGGCCATT
Homology
[Close]
BLAST of CU111388 vs. Swiss-Prot
Match: ARMC6_MOUSE (Armadillo repeat-containing protein 6 OS=Mus musculus GN=Armc6 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = -2 

Query: 22  AVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRAL 81
           A + VL LR P+N+   IE G    A+QAM+  P    +Q+ +C +IRNLV R+      
Sbjct: 359 AALCVLALRKPDNSRVIIEGGGALAALQAMKAHPQEAGVQKQACMLIRNLVSRSQVFSKP 418

Query: 82  LLKTGIEKYIRKAKQDH 141
           +L  G E+ I +A+  H
Sbjct: 419 ILDLGAEELILQARAAH 435

Query: 142  201
           
Sbjct: 479  435

Query: 202  253
           
Sbjct: 539  435

[Close]
BLAST of CU111388 vs. Swiss-Prot
Match: ARMC6_PONAB (Armadillo repeat-containing protein 6 OS=Pongo abelii GN=ARMC6 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-06
Identity = 27/78 (34.62%), Postives = 39/78 (50.00%), Query Frame = -2 

Query: 19  AVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRAL 78
           A +  L LR P+N+   +E G    A+QAM+  P    +Q+ +C +IRNLV  +      
Sbjct: 392 AALCFLALRKPDNSRIIVEGGGAVAALQAMKAHPQKAGVQKQACMLIRNLVAHSQAFSKP 451

Query: 79  LLKTGIEKYIRKAKQDHR 138
           +L  G E  I +A+  HR
Sbjct: 452 ILDLGAEALIMQARSAHR 469

Query: 139  198
           
Sbjct: 512  469

Query: 199  253
           
Sbjct: 572  469

[Close]
BLAST of CU111388 vs. Swiss-Prot
Match: ARMC6_HUMAN (Armadillo repeat-containing protein 6 OS=Homo sapiens GN=ARMC6 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-06
Identity = 27/78 (34.62%), Postives = 38/78 (48.72%), Query Frame = -2 

Query: 19  AVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRAL 78
           A +  L LR P+N+   +E G    A+QAM+  P    +Q+ +C +IRNLV         
Sbjct: 392 AALCFLALRKPDNSRIIVEGGGAVAALQAMKAHPQKAGVQKQACMLIRNLVAHGQAFSKP 451

Query: 79  LLKTGIEKYIRKAKQDHR 138
           +L  G E  I +A+  HR
Sbjct: 452 ILDLGAEALIMQARSAHR 469

Query: 139  198
           
Sbjct: 512  469

Query: 199  253
           
Sbjct: 572  469

[Close]
BLAST of CU111388 vs. TrEMBL
Match: A0A0A0K4T9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074820 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.1e-34
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA
Sbjct: 368 MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 427

Query: 82  LLLKTGIEKYIRKAKQDH 141
           LLLKTGIEKYIRKAKQ+H
Sbjct: 428 LLLKTGIEKYIRKAKQNH 445

Query: 142  201
           
Sbjct: 488  445

Query: 202  256
           
Sbjct: 548  445

[Close]
BLAST of CU111388 vs. TrEMBL
Match: A0A0B2QWH2_GLYSO (Armadillo repeat-containing protein 6 OS=Glycine soja GN=glysoja_047318 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-27
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           M+++SVL+LRSP+NA +AIEAGAGDLAIQAM+KFP+A QMQRNSC MIRNLVVRNPENR 
Sbjct: 365 MSIISVLSLRSPDNAARAIEAGAGDLAIQAMEKFPAAHQMQRNSCLMIRNLVVRNPENRT 424

Query: 82  LLLKTGIEKYIRKAKQDH 141
           +LL  GIEKYIRKAKQ H
Sbjct: 425 ILLNNGIEKYIRKAKQTH 442

Query: 142  201
           
Sbjct: 485  442

Query: 202  256
           
Sbjct: 545  442

[Close]
BLAST of CU111388 vs. TrEMBL
Match: I1KL23_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G178400 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-27
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           M+++SVL+LRSP+NA +AIEAGAGDLAIQAM+KFP+A QMQRNSC MIRNLVVRNPENR 
Sbjct: 368 MSIISVLSLRSPDNAARAIEAGAGDLAIQAMEKFPAAHQMQRNSCLMIRNLVVRNPENRT 427

Query: 82  LLLKTGIEKYIRKAKQDH 141
           +LL  GIEKYIRKAKQ H
Sbjct: 428 ILLNNGIEKYIRKAKQTH 445

Query: 142  201
           
Sbjct: 488  445

Query: 202  256
           
Sbjct: 548  445

[Close]
BLAST of CU111388 vs. TrEMBL
Match: I1KL25_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G178400 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-27
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           M+++SVL+LRSP+NA +AIEAGAGDLAIQAM+KFP+A QMQRNSC MIRNLVVRNPENR 
Sbjct: 365 MSIISVLSLRSPDNAARAIEAGAGDLAIQAMEKFPAAHQMQRNSCLMIRNLVVRNPENRT 424

Query: 82  LLLKTGIEKYIRKAKQDH 141
           +LL  GIEKYIRKAKQ H
Sbjct: 425 ILLNNGIEKYIRKAKQTH 442

Query: 142  201
           
Sbjct: 485  442

Query: 202  256
           
Sbjct: 545  442

[Close]
BLAST of CU111388 vs. TrEMBL
Match: V7C8E6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G012500g PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.0e-27
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           M+V+SVL LR PENAT+A+EAGAG+LA+QAMQKFP+A QMQRNSC MIRNLVVRNPENR 
Sbjct: 358 MSVISVLCLRLPENATRAVEAGAGELAVQAMQKFPAAHQMQRNSCLMIRNLVVRNPENRT 417

Query: 82  LLLKTGIEKYIRKAKQDH 141
           +LL  GIEKYIRKAKQ H
Sbjct: 418 ILLNNGIEKYIRKAKQTH 435

Query: 142  201
           
Sbjct: 478  435

Query: 202  256
           
Sbjct: 538  435

[Close]
BLAST of CU111388 vs. NCBI nr
Match: gi|449438432|ref|XP_004136992.1| (PREDICTED: armadillo repeat-containing protein 6 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 6.1e-33
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA
Sbjct: 368 MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 427

Query: 82  LLLKTGIEKYIRKAKQDH 141
           LLLKTGIEKYIRKAKQ+H
Sbjct: 428 LLLKTGIEKYIRKAKQNH 445

Query: 142  201
           
Sbjct: 488  445

Query: 202  256
           
Sbjct: 548  445

[Close]
BLAST of CU111388 vs. NCBI nr
Match: gi|659109856|ref|XP_008454917.1| (PREDICTED: armadillo repeat-containing protein 6 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 5.2e-32
Identity = 74/78 (94.87%), Postives = 78/78 (100.00%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           MAV+SVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENR+
Sbjct: 368 MAVISVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRS 427

Query: 82  LLLKTGIEKYIRKAKQDH 141
           LLLK+GIEKYIRKAKQ+H
Sbjct: 428 LLLKSGIEKYIRKAKQNH 445

Query: 142  201
           
Sbjct: 488  445

Query: 202  256
           
Sbjct: 548  445

[Close]
BLAST of CU111388 vs. NCBI nr
Match: gi|947101277|gb|KRH49769.1| (hypothetical protein GLYMA_07G178400 [Glycine max])

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-26
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           M+++SVL+LRSP+NA +AIEAGAGDLAIQAM+KFP+A QMQRNSC MIRNLVVRNPENR 
Sbjct: 368 MSIISVLSLRSPDNAARAIEAGAGDLAIQAMEKFPAAHQMQRNSCLMIRNLVVRNPENRT 427

Query: 82  LLLKTGIEKYIRKAKQDH 141
           +LL  GIEKYIRKAKQ H
Sbjct: 428 ILLNNGIEKYIRKAKQTH 445

Query: 142  201
           
Sbjct: 488  445

Query: 202  256
           
Sbjct: 548  445

[Close]
BLAST of CU111388 vs. NCBI nr
Match: gi|356521205|ref|XP_003529247.1| (PREDICTED: armadillo repeat-containing protein 6 isoform X1 [Glycine max])

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-26
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           M+++SVL+LRSP+NA +AIEAGAGDLAIQAM+KFP+A QMQRNSC MIRNLVVRNPENR 
Sbjct: 365 MSIISVLSLRSPDNAARAIEAGAGDLAIQAMEKFPAAHQMQRNSCLMIRNLVVRNPENRT 424

Query: 82  LLLKTGIEKYIRKAKQDH 141
           +LL  GIEKYIRKAKQ H
Sbjct: 425 ILLNNGIEKYIRKAKQTH 442

Query: 142  201
           
Sbjct: 485  442

Query: 202  256
           
Sbjct: 545  442

[Close]
BLAST of CU111388 vs. NCBI nr
Match: gi|1012264713|ref|XP_015947058.1| (PREDICTED: armadillo repeat-containing protein 6 [Arachis duranensis])

HSP 1 Score: 125.2 bits (313), Expect = 5.6e-26
Identity = 61/78 (78.21%), Postives = 71/78 (91.03%), Query Frame = -2 

Query: 22  MAVVSVLTLRSPENATQAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRA 81
           M+++SVL+LR+PENA +A+EAGAGDLAIQAMQKFP+A QMQRNSC MIRNLVVRNPENR 
Sbjct: 359 MSIISVLSLRAPENAARAVEAGAGDLAIQAMQKFPAAAQMQRNSCLMIRNLVVRNPENRT 418

Query: 82  LLLKTGIEKYIRKAKQDH 141
           +LL  G+EKYIRKAKQ H
Sbjct: 419 VLLNNGVEKYIRKAKQTH 436

Query: 142  201
           
Sbjct: 479  436

Query: 202  256
           
Sbjct: 539  436

The following BLAST results are available for this feature:
BLAST of CU111388 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARMC6_MOUSE1.3e-0637.66Armadillo repeat-containing protein 6 OS=Mus musculus GN=Armc6 PE=1 SV=1[more]
ARMC6_PONAB2.9e-0634.62Armadillo repeat-containing protein 6 OS=Pongo abelii GN=ARMC6 PE=2 SV=1[more]
ARMC6_HUMAN3.8e-0634.62Armadillo repeat-containing protein 6 OS=Homo sapiens GN=ARMC6 PE=1 SV=2[more]
BLAST of CU111388 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4T9_CUCSA5.1e-3498.72Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074820 PE=4 SV=1[more]
A0A0B2QWH2_GLYSO3.5e-2779.49Armadillo repeat-containing protein 6 OS=Glycine soja GN=glysoja_047318 PE=4 SV=... [more]
I1KL23_SOYBN3.5e-2779.49Uncharacterized protein OS=Glycine max GN=GLYMA_07G178400 PE=4 SV=1[more]
I1KL25_SOYBN3.5e-2779.49Uncharacterized protein OS=Glycine max GN=GLYMA_07G178400 PE=4 SV=1[more]
V7C8E6_PHAVU6.0e-2779.49Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G012500g PE=4 SV=1[more]
BLAST of CU111388 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438432|ref|XP_004136992.1|6.1e-3398.72PREDICTED: armadillo repeat-containing protein 6 [Cucumis sativus][more]
gi|659109856|ref|XP_008454917.1|5.2e-3294.87PREDICTED: armadillo repeat-containing protein 6 [Cucumis melo][more]
gi|947101277|gb|KRH49769.1|4.3e-2679.49hypothetical protein GLYMA_07G178400 [Glycine max][more]
gi|356521205|ref|XP_003529247.1|4.3e-2679.49PREDICTED: armadillo repeat-containing protein 6 isoform X1 [Glycine max][more]
gi|1012264713|ref|XP_015947058.1|5.6e-2678.21PREDICTED: armadillo repeat-containing protein 6 [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa7G074820Csa7G074820gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KIYV5FKNP3UI02KIYV5EST
G0107916G0107916EST
G0178260G0178260EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 5..67
score: 9.
IPR016024Armadillo-type foldunknownSSF48371ARM repeatcoord: 4..71
score: 1.0
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 1..79
score: 2.1