CU111113 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU111113
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Exocyst complex component sec15B
Location	Chr7 : 15391213 .. 15391669 (-)
Sequence length	458

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCTTTCGGGGTTGCTTAAAACAAAGGTTGATGGTTTCATGGTGTTGATTGAGAATGTTAACTGGATACCTGATGAGCCTCTACAAAATGGTAATGAATACGTAAATGAGGTTATTATATATTTGGAAACTCTGGTTTCCACAGCTCAACAGATATTGCCTGTTCAAGTCCTTAAAAGGGTATTACAAGATGTTCTTTCTCACATATCCGTGATGATCGTTGGAGCCTTACAATCTGATTCAGTAAAGAGGTTTAATGTTAATGCTGTAATGGGGATTGATGTGGATATAAAAATTGTTGGAAGGTTTCGTGGATAGTCAAGCTTCTATTTTTGCGGAGGAGGATCTAAAATCAGTTAAAGGCAGCTCTTTCTGAAGCAAGACAAATGATTAATTTGCTTTTGAGCAGTCATCCAGAGAATTTCCTGAATGCAGTTATTCGAGAGAGAAGTTACTACAG

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	1
Cucumber male flower buds	1

Homology

[Close]

BLAST of CU111113 vs. Swiss-Prot
Match: SC15B_ARATH (Exocyst complex component SEC15B OS=Arabidopsis thaliana GN=SEC15B PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.9e-31
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSG+LK K+DGFM L+ENVNW  D+  Q GNEY+NEV+IYLETLVSTAQQILP +VLKRV
Sbjct: 587 LSGMLKKKIDGFMTLLENVNWTSDDIPQGGNEYMNEVLIYLETLVSTAQQILPAKVLKRV 646

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           L+DVL+HIS  IVG L  D VKR ++ A+ G+DVDI+++
Sbjct: 647 LRDVLAHISEKIVGTLCGDLVKRLSMAAIKGLDVDIQLL 685

Query: 122  181
           
Sbjct: 707  685

Query: 182  241
           
Sbjct: 767  685

Query: 242  299
           
Sbjct: 827  685

[Close]

BLAST of CU111113 vs. Swiss-Prot
Match: SC15A_ARATH (Exocyst complex component SEC15A OS=Arabidopsis thaliana GN=SEC15A PE=3 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-21
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           L  ++ TK+D FM L ENVNW  +E  Q  +EY+NEV+IYLET++STAQQILP+  L +V
Sbjct: 587 LLNVVNTKLDEFMKLTENVNWTTEEMPQGPHEYINEVVIYLETVMSTAQQILPMDALYKV 646

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
               + HIS  IV    SDS+KRFN NAV  I+ D++++
Sbjct: 647 GVGAIEHISNSIVSTFLSDSIKRFNANAVSAINHDLRVI 685

Query: 122  181
           
Sbjct: 707  685

Query: 182  241
           
Sbjct: 767  685

Query: 242  299
           
Sbjct: 827  685

[Close]

BLAST of CU111113 vs. TrEMBL
Match: A0A0A0K9A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398140 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.1e-45
Identity = 96/99 (96.97%), Postives = 99/99 (100.00%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLKTKVDGFM+LIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV
Sbjct: 605 LSGLLKTKVDGFMMLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 664

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIK++
Sbjct: 665 LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKLL 703

Query: 122  181
           
Sbjct: 725  703

Query: 182  241
           
Sbjct: 785  703

Query: 242  299
           
Sbjct: 845  703

[Close]

BLAST of CU111113 vs. TrEMBL
Match: A0A067JWB6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13953 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.2e-39
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLK KVDGFM LIENVNW+ DEP+QNGNEYVNEVIIYLETLVSTAQQILP QVLKRV
Sbjct: 607 LSGLLKQKVDGFMTLIENVNWMADEPIQNGNEYVNEVIIYLETLVSTAQQILPAQVLKRV 666

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           LQDVLSHIS  IVGAL  DSVKRFN+NA+MGIDVDI+++
Sbjct: 667 LQDVLSHISETIVGALYGDSVKRFNINAIMGIDVDIRLL 705

Query: 122  181
           
Sbjct: 727  705

Query: 182  241
           
Sbjct: 787  705

Query: 242  299
           
Sbjct: 847  705

[Close]

BLAST of CU111113 vs. TrEMBL
Match: A0A067HGN4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041288mg PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLK KVDGFM LIENVNW+ DEPLQNGNEYVNEVIIYLETLVSTAQQILP QVL+RV
Sbjct: 604 LSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRV 663

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           LQDVLSHIS  IVGA+  DSVKRFN+NA+MGIDVDI+++
Sbjct: 664 LQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLL 702

Query: 122  181
           
Sbjct: 724  702

Query: 182  241
           
Sbjct: 784  702

Query: 242  299
           
Sbjct: 844  702

[Close]

BLAST of CU111113 vs. TrEMBL
Match: V4VWD1_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024146mg PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLK KVDGFM LIENVNW+ DEPLQNGNEYVNEVIIYLETLVSTAQQILP QVL+RV
Sbjct: 616 LSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRV 675

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           LQDVLSHIS  IVGA+  DSVKRFN+NA+MGIDVDI+++
Sbjct: 676 LQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLL 714

Query: 122  181
           
Sbjct: 736  714

Query: 182  241
           
Sbjct: 796  714

Query: 242  299
           
Sbjct: 856  714

[Close]

BLAST of CU111113 vs. TrEMBL
Match: B9GSB7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s20450g PE=4 SV=2)

HSP 1 Score: 164.9 bits (416), Expect = 7.9e-38
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLK KVDGFM LIENVNW+ DEP Q+GNEYVNEV+IYLETLVSTAQQILP  VLKRV
Sbjct: 597 LSGLLKQKVDGFMTLIENVNWMADEPTQSGNEYVNEVMIYLETLVSTAQQILPAPVLKRV 656

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           LQDVLSHIS MIVGAL  DSVKRFNVNA+MGIDVDI+++
Sbjct: 657 LQDVLSHISEMIVGALLGDSVKRFNVNAIMGIDVDIRLL 695

Query: 122  181
           
Sbjct: 717  695

Query: 182  241
           
Sbjct: 777  695

Query: 242  299
           
Sbjct: 837  695

[Close]

BLAST of CU111113 vs. NCBI nr
Match: gi|449436475|ref|XP_004136018.1| (PREDICTED: exocyst complex component SEC15B [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 8.1e-44
Identity = 96/99 (96.97%), Postives = 99/99 (100.00%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLKTKVDGFM+LIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV
Sbjct: 605 LSGLLKTKVDGFMMLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 664

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIK++
Sbjct: 665 LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKLL 703

Query: 122  181
           
Sbjct: 725  703

Query: 182  241
           
Sbjct: 785  703

Query: 242  299
           
Sbjct: 845  703

[Close]

BLAST of CU111113 vs. NCBI nr
Match: gi|659101538|ref|XP_008451659.1| (PREDICTED: exocyst complex component SEC15B [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 8.4e-41
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLK KVDGFM+LIENVNW+PDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV
Sbjct: 605 LSGLLKAKVDGFMMLIENVNWVPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 664

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVD 121
           LQDVLSHISVMIVGALQSDSVKRFNVNAVMGID +
Sbjct: 665 LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDAN 699

Query: 122  181
           
Sbjct: 725  699

Query: 182  241
           
Sbjct: 785  699

Query: 242  287
           
Sbjct: 845  699

[Close]

BLAST of CU111113 vs. NCBI nr
Match: gi|802688958|ref|XP_012082801.1| (PREDICTED: exocyst complex component SEC15B [Jatropha curcas])

HSP 1 Score: 165.6 bits (418), Expect = 6.7e-38
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLK KVDGFM LIENVNW+ DEP+QNGNEYVNEVIIYLETLVSTAQQILP QVLKRV
Sbjct: 607 LSGLLKQKVDGFMTLIENVNWMADEPIQNGNEYVNEVIIYLETLVSTAQQILPAQVLKRV 666

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           LQDVLSHIS  IVGAL  DSVKRFN+NA+MGIDVDI+++
Sbjct: 667 LQDVLSHISETIVGALYGDSVKRFNINAIMGIDVDIRLL 705

Query: 122  181
           
Sbjct: 727  705

Query: 182  241
           
Sbjct: 787  705

Query: 242  299
           
Sbjct: 847  705

[Close]

BLAST of CU111113 vs. NCBI nr
Match: gi|567903792|ref|XP_006444384.1| (hypothetical protein CICLE_v10024146mg, partial [Citrus clementina])

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-37
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLK KVDGFM LIENVNW+ DEPLQNGNEYVNEVIIYLETLVSTAQQILP QVL+RV
Sbjct: 616 LSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRV 675

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           LQDVLSHIS  IVGA+  DSVKRFN+NA+MGIDVDI+++
Sbjct: 676 LQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLL 714

Query: 122  181
           
Sbjct: 736  714

Query: 182  241
           
Sbjct: 796  714

Query: 242  299
           
Sbjct: 856  714

[Close]

BLAST of CU111113 vs. NCBI nr
Match: gi|568852660|ref|XP_006479990.1| (PREDICTED: exocyst complex component SEC15B [Citrus sinensis])

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-37
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 2


Query: 2   LSGLLKTKVDGFMVLIENVNWIPDEPLQNGNEYVNEVIIYLETLVSTAQQILPVQVLKRV 61
           LSGLLK KVDGFM LIENVNW+ DEPLQNGNEYVNEVIIYLETLVSTAQQILP QVL+RV
Sbjct: 604 LSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRV 663

Query: 62  LQDVLSHISVMIVGALQSDSVKRFNVNAVMGIDVDIKIV 121
           LQDVLSHIS  IVGA+  DSVKRFN+NA+MGIDVDI+++
Sbjct: 664 LQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLL 702

Query: 122  181
           
Sbjct: 724  702

Query: 182  241
           
Sbjct: 784  702

Query: 242  299
           
Sbjct: 844  702

The following BLAST results are available for this feature:

BLAST of CU111113 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SC15B_ARATH	7.9e-31	66.67	Exocyst complex component SEC15B OS=Arabidopsis thaliana GN=SEC15B PE=1 SV=1	[more]
SC15A_ARATH	1.9e-21	51.52	Exocyst complex component SEC15A OS=Arabidopsis thaliana GN=SEC15A PE=3 SV=2	[more]

BLAST of CU111113 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9A2_CUCSA	5.1e-45	96.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398140 PE=4 SV=1	[more]
A0A067JWB6_JATCU	4.2e-39	84.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13953 PE=4 SV=1	[more]
A0A067HGN4_CITSI	1.6e-38	83.84	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041288mg PE=4 SV=1	[more]
V4VWD1_9ROSI	1.6e-38	83.84	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024146mg PE=...	[more]
B9GSB7_POPTR	7.9e-38	83.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s20450g PE=4 SV=2	[more]

BLAST of CU111113 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436475\|ref\|XP_004136018.1\|	8.1e-44	96.97	PREDICTED: exocyst complex component SEC15B [Cucumis sativus]	[more]
gi\|659101538\|ref\|XP_008451659.1\|	8.4e-41	94.74	PREDICTED: exocyst complex component SEC15B [Cucumis melo]	[more]
gi\|802688958\|ref\|XP_012082801.1\|	6.7e-38	84.85	PREDICTED: exocyst complex component SEC15B [Jatropha curcas]	[more]
gi\|567903792\|ref\|XP_006444384.1\|	2.5e-37	83.84	hypothetical protein CICLE_v10024146mg, partial [Citrus clementina]	[more]
gi\|568852660\|ref\|XP_006479990.1\|	2.5e-37	83.84	PREDICTED: exocyst complex component SEC15B [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR007225	EXOC6/Sec15

Vocabulary: **Cellular Component**
Term	Definition
GO:0000145	exocyst

Vocabulary: **Biological Process**
Term	Definition
GO:0006904	vesicle docking involved in exocytosis

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006904	vesicle docking involved in exocytosis
cellular_component	GO:0000145	exocyst

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G398140	Csa7G398140	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KYH26	FKNP3UI02KYH26	EST
G0066489	G0066489	EST
csa02-1ms2-a06	csa02-1ms2-a06	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007225	Exocyst complex subunit Sec15-like	PANTHER	PTHR12702	SEC15	coord: 2..103 score: 1.4
IPR007225	Exocyst complex subunit Sec15-like	PFAM	PF04091	Sec15	coord: 3..101 score: 5.5
None	No IPR available	PANTHER	PTHR12702:SF1	EXOCYST COMPLEX COMPONENT SEC15B	coord: 2..103 score: 1.4