CU111038 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU111038
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Reticulon-like protein
Location	Chr6 : 11026000 .. 11026621 (+)
Sequence length	276

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AATCTGTCAAAGGAACAATGATGAAAAGAAACATAAAGACTTCAAGCTTAAAGAAGATGACATAAAACGCTTGGTGAAACTGGTTCTTCCGGCTGCAAATTTCGCCATTTTCAAGATTCGGGAGCTTTTCTGTGGAGAGGCAGAGATGACCTTGAAAGTAGCCCCATTTCTCATTTTAGGAGCTGAATATGGATATCTTATTACTCTTAGAAGACTCTGTGCAATTGGGTTCTTTAGCAGTTTTCTCTGTGCCAAAGCTGTATACATGTTACCAGT

Library


Library category	ESTs
fruit (8DPP) library	2
gynoecious flower library	1

Homology

[Close]

BLAST of CU111038 vs. Swiss-Prot
Match: RTNLQ_ARATH (Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-19
Identity = 50/85 (58.82%), Postives = 57/85 (67.06%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           +CQR N++ K + F + EDD+ R  + VLPA NF I K  ELF GE  MTLKV PFL+LG
Sbjct: 225 LCQRKNEDTK-RAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLG 284

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYG+LITL RL A GFF SF   K
Sbjct: 285 AEYGHLITLWRLSAFGFFLSFTIPK 308

Query: 122  181
           
Sbjct: 345  308

Query: 182  241
           
Sbjct: 405  308

Query: 242  257
           
Sbjct: 465  308

[Close]

BLAST of CU111038 vs. Swiss-Prot
Match: RTNLR_ARATH (Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 3.2e-19
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 2


Query: 23  EKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILGAEYGYLI 82
           E+  ++ KL EDD+ R+ + +LP  N AI K  ELF GE  MTLKVAPF+++GAEYGYLI
Sbjct: 259 EEARRELKLSEDDVLRIARRMLPITNLAISKTSELFSGEPAMTLKVAPFVLMGAEYGYLI 318

Query: 83  TLRRLCAIGFFSSFLCAK 142
           TL RLCA GFF SF   K
Sbjct: 319 TLWRLCAFGFFLSFTIPK 336

Query: 143  202
           
Sbjct: 379  336

Query: 203  257
           
Sbjct: 439  336

[Close]

BLAST of CU111038 vs. Swiss-Prot
Match: RTNLS_ARATH (Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 2


Query: 20  DEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILGAEYGYL 79
           +E++HK   ++E+D+KR+++L++P  N ++ ++R LF G+   TLK+   L + A  G  
Sbjct: 294 EEERHKVVGVREEDVKRMLRLIMPYLNESLHQLRALFSGDPSTTLKMGVVLFVLARCGSS 353

Query: 80  ITLRRLCAIGFFSSFLCAK 139
           ITL  L   GF  +F   K
Sbjct: 354 ITLWNLAKFGFLGAFTIPK 372

Query: 140  199
           
Sbjct: 414  372

Query: 200  257
           
Sbjct: 474  372

[Close]

BLAST of CU111038 vs. TrEMBL
Match: A0A0A0KBW7_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.7e-30
Identity = 73/85 (85.88%), Postives = 74/85 (87.06%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQR        +FKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG
Sbjct: 241 ICQRY-------NFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 300

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYGYLITLRRLCAIGFFSSF   K
Sbjct: 301 AEYGYLITLRRLCAIGFFSSFSVPK 318

Query: 122  181
           
Sbjct: 361  318

Query: 182  241
           
Sbjct: 421  318

Query: 242  257
           
Sbjct: 481  318

[Close]

BLAST of CU111038 vs. TrEMBL
Match: A0A0A0KBW7_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 4.8e+02
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 3


Query: 198 LLLLEDSVQLGSLAVFSVPKLYTCYQ 257
           L+ L     +G  + FSVPKLYTCYQ
Sbjct: 299 LITLRRLCAIGFFSSFSVPKLYTCYQ 324

Query: 258  276
           
Sbjct: 359  324

HSP 2 Score: 122.5 bits (306), Expect = 2.7e-25
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQRNN EK+ +D +LKEDDI R+ +L+LPAAN AI K RELF GE  MTLKVAPFL+LG
Sbjct: 28  ICQRNNIEKR-RDIQLKEDDILRVARLILPAANLAISKRRELFSGEPSMTLKVAPFLLLG 87

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYG+LITLRRLCAIGFF SF+  K
Sbjct: 88  AEYGHLITLRRLCAIGFFVSFIAPK 111

Query: 122  181
           
Sbjct: 148  111

Query: 182  241
           
Sbjct: 208  111

Query: 242  257
           
Sbjct: 268  111

[Close]

BLAST of CU111038 vs. TrEMBL
Match: A0A059DGI5_EUCGR (Reticulon-like protein OS=Eucalyptus grandis GN=EUGRSUZ_A01854 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-25
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQRNN EK+ +D +LKEDDI R+ +L+LPAAN AI K RELF GE  MTLKVAPFL+LG
Sbjct: 251 ICQRNNIEKR-RDIQLKEDDILRVARLILPAANLAISKTRELFSGEPSMTLKVAPFLLLG 310

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYG+LITLRRLCAIGFF SF   K
Sbjct: 311 AEYGHLITLRRLCAIGFFVSFTAPK 334

Query: 122  181
           
Sbjct: 371  334

Query: 182  241
           
Sbjct: 431  334

Query: 242  257
           
Sbjct: 491  334

[Close]

BLAST of CU111038 vs. TrEMBL
Match: A0A059A604_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01702 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.0e-25
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQRNN EK+ +D +LKEDDI R+ +L+LPAAN AI K RELF GE  MTLKVAPFL+LG
Sbjct: 28  ICQRNNIEKR-RDIQLKEDDILRVARLILPAANLAISKRRELFSGEPSMTLKVAPFLLLG 87

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYG+LITLRRLCAIGFF SF   K
Sbjct: 88  AEYGHLITLRRLCAIGFFVSFTAPK 111

Query: 122  181
           
Sbjct: 148  111

Query: 182  241
           
Sbjct: 208  111

Query: 242  257
           
Sbjct: 268  111

[Close]

BLAST of CU111038 vs. TrEMBL
Match: A0A058ZRM1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L02085 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.0e-25
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQRNN EK+ +D +LKEDDI R+ +L+LPAAN AI K RELF GE  MTLKVAPFL+LG
Sbjct: 28  ICQRNNIEKR-RDIQLKEDDILRVARLILPAANLAISKRRELFSGEPSMTLKVAPFLLLG 87

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYG+LITLRRLCAIGFF SF   K
Sbjct: 88  AEYGHLITLRRLCAIGFFVSFTAPK 111

Query: 122  181
           
Sbjct: 148  111

Query: 182  241
           
Sbjct: 208  111

Query: 242  257
           
Sbjct: 268  111

[Close]

BLAST of CU111038 vs. NCBI nr
Match: gi|449463106|ref|XP_004149275.1| (PREDICTED: reticulon-like protein B17 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 4.4e-37
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG
Sbjct: 234 ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 293

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYGYLITLRRLCAIGFFSSF   K
Sbjct: 294 AEYGYLITLRRLCAIGFFSSFSVPK 318

Query: 122  181
           
Sbjct: 354  318

Query: 182  241
           
Sbjct: 414  318

Query: 242  257
           
Sbjct: 474  318

[Close]

BLAST of CU111038 vs. NCBI nr
Match: gi|659094813|ref|XP_008448255.1| (PREDICTED: reticulon-like protein B17 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-34
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQRNN EKKHKDFKLKEDDIK LVKLVLPAANFAI KIRELFCGEAEMTLKVAPFLILG
Sbjct: 233 ICQRNNVEKKHKDFKLKEDDIKHLVKLVLPAANFAILKIRELFCGEAEMTLKVAPFLILG 292

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYG+LITLRRLCAIGFFSSF   K
Sbjct: 293 AEYGHLITLRRLCAIGFFSSFSVPK 317

Query: 122  181
           
Sbjct: 353  317

Query: 182  241
           
Sbjct: 413  317

Query: 242  257
           
Sbjct: 473  317

[Close]

BLAST of CU111038 vs. NCBI nr
Match: gi|700191779|gb|KGN46983.1| (hypothetical protein Csa_6G157090 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-29
Identity = 73/85 (85.88%), Postives = 74/85 (87.06%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQR        +FKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG
Sbjct: 241 ICQRY-------NFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 300

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYGYLITLRRLCAIGFFSSF   K
Sbjct: 301 AEYGYLITLRRLCAIGFFSSFSVPK 318

Query: 122  181
           
Sbjct: 361  318

Query: 182  241
           
Sbjct: 421  318

Query: 242  257
           
Sbjct: 481  318

[Close]

BLAST of CU111038 vs. NCBI nr
Match: gi|629099707|gb|KCW65472.1| (hypothetical protein EUGRSUZ_G02883 [Eucalyptus grandis])

HSP 1 Score: 119.0 bits (297), Expect = 4.3e-24
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQRNN EK+ +D +LKEDDI R+ +L+LPAAN AI K RELF GE  MTLKVAPFL+LG
Sbjct: 28  ICQRNNIEKR-RDIQLKEDDILRVARLILPAANLAISKRRELFSGEPSMTLKVAPFLLLG 87

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYG+LITLRRLCAIGFF SF+  K
Sbjct: 88  AEYGHLITLRRLCAIGFFVSFIAPK 111

Query: 122  181
           
Sbjct: 148  111

Query: 182  241
           
Sbjct: 208  111

Query: 242  257
           
Sbjct: 268  111

[Close]

BLAST of CU111038 vs. NCBI nr
Match: gi|702245010|ref|XP_010052231.1| (PREDICTED: reticulon-like protein B18 [Eucalyptus grandis])

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-24
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 2


Query: 2   ICQRNNDEKKHKDFKLKEDDIKRLVKLVLPAANFAIFKIRELFCGEAEMTLKVAPFLILG 61
           ICQRNN EK+ +D +LKEDDI R+ +L+LPAAN AI K RELF GE  MTLKVAPFL+LG
Sbjct: 251 ICQRNNIEKR-RDIQLKEDDILRVARLILPAANLAISKTRELFSGEPSMTLKVAPFLLLG 310

Query: 62  AEYGYLITLRRLCAIGFFSSFLCAK 121
           AEYG+LITLRRLCAIGFF SF   K
Sbjct: 311 AEYGHLITLRRLCAIGFFVSFTAPK 334

Query: 122  181
           
Sbjct: 371  334

Query: 182  241
           
Sbjct: 431  334

Query: 242  257
           
Sbjct: 491  334

The following BLAST results are available for this feature:

BLAST of CU111038 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTNLQ_ARATH	1.9e-19	58.82	Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1	[more]
RTNLR_ARATH	3.2e-19	58.97	Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2 SV=2	[more]
RTNLS_ARATH	2.5e-08	35.44	Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2	[more]

BLAST of CU111038 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBW7_CUCSA	4.7e-30	85.88	Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1	[more]
A0A0A0KBW7_CUCSA	4.8e+02	53.85	Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1	[more]
A0A059DGI5_EUCGR	3.5e-25	72.94	Reticulon-like protein OS=Eucalyptus grandis GN=EUGRSUZ_A01854 PE=4 SV=1	[more]
A0A059A604_EUCGR	6.0e-25	72.94	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01702 PE=4 SV=1	[more]
A0A058ZRM1_EUCGR	6.0e-25	72.94	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L02085 PE=4 SV=1	[more]

BLAST of CU111038 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463106\|ref\|XP_004149275.1\|	4.4e-37	96.47	PREDICTED: reticulon-like protein B17 [Cucumis sativus]	[more]
gi\|659094813\|ref\|XP_008448255.1\|	3.5e-34	91.76	PREDICTED: reticulon-like protein B17 [Cucumis melo]	[more]
gi\|700191779\|gb\|KGN46983.1\|	2.6e-29	85.88	hypothetical protein Csa_6G157090 [Cucumis sativus]	[more]
gi\|629099707\|gb\|KCW65472.1\|	4.3e-24	72.94	hypothetical protein EUGRSUZ_G02883 [Eucalyptus grandis]	[more]
gi\|702245010\|ref\|XP_010052231.1\|	5.6e-24	72.94	PREDICTED: reticulon-like protein B18 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003388	Reticulon

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G157090	Csa6G157090	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LAJE1	FKNP3UI02LAJE1	EST
FKNP3UI02N2VV7	FKNP3UI02N2VV7	EST
G0080518	G0080518	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 9..84 score: 3.4
None	No IPR available	PANTHER	PTHR10994	RETICULON	coord: 2..82 score: 1.4