CU110808 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU110808
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mutator-like transposase-like protein
Location	Chr2 : 7230234 .. 7230500 (+)
Sequence length	267

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GATTGCGGAGGCAATTGCAGATGCTCGTTGTTATCAAGTACTTCGTGCGAATGAAGTTGAGTTTGAAATTGTCTCAACTGAGAGGACAAATATTGTGGAGATACATAGTCGTGTGTGCTCCTGTCGTCGTTGGCAACTATATGGACTCCCTTGTGCTCATGCCGCTGCGGCTCTAATGTCCTGTGGGCAGAATGCTCATCTACTTGCTGAGCCTTGTTTCACTGTCACTAGTTACCGTAGAAACTTATTCACAAATGATATACCCAA

Library


Library category	ESTs
gynoecious flower library	1
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU110808 vs. TrEMBL
Match: A0A0A0LN02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094910 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.8e-38
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS
Sbjct: 434 IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 493

Query: 62  CGQNAHLLAEPCFTVTSYR 121
           CGQNAHL AEPCFTVTSYR
Sbjct: 494 CGQNAHLFAEPCFTVTSYR 512

Query: 122  181
           
Sbjct: 554  512

Query: 182  239
           
Sbjct: 614  512

[Close]

BLAST of CU110808 vs. TrEMBL
Match: A0A061FG29_THECC (MuDR family transposase isoform 1 OS=Theobroma cacao GN=TCM_035107 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.2e-35
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           I EAIADARCYQVLRANE+EFEIVSTERTNIV+I SRVCSCRRWQLYGLPCAHAAAAL+S
Sbjct: 485 ILEAIADARCYQVLRANEIEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALIS 544

Query: 62  CGQNAHLLAEPCFTVTSYRR--NLFTNDIP 121
           CGQNAHL AEPCFTV SYR   +   N IP
Sbjct: 545 CGQNAHLFAEPCFTVASYRETYSQMINPIP 574

Query: 122  181
           
Sbjct: 605  574

Query: 182  241
           
Sbjct: 665  574

Query: 242  266
           
Sbjct: 725  574

[Close]

BLAST of CU110808 vs. TrEMBL
Match: A0A067JKI4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23146 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.2e-35
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           I EAIADARCYQVLRANE+EFEIVSTERTNIV+I SRVCSCRRWQLYGLPCAHAAAAL+S
Sbjct: 434 ILEAIADARCYQVLRANEIEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALIS 493

Query: 62  CGQNAHLLAEPCFTVTSYRR--NLFTNDIP 121
           CGQNAHL AEPCFTV SYR   +   N IP
Sbjct: 494 CGQNAHLFAEPCFTVVSYRETYSQMINPIP 523

Query: 122  181
           
Sbjct: 554  523

Query: 182  241
           
Sbjct: 614  523

Query: 242  266
           
Sbjct: 674  523

[Close]

BLAST of CU110808 vs. TrEMBL
Match: A0A0D2U3A4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G180100 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-34
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           I+EAIADARCYQVLRANEVEFEIVSTERTNIV+I SRVCSCRRWQLYGLPCAHAAAAL+S
Sbjct: 434 ISEAIADARCYQVLRANEVEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALIS 493

Query: 62  CGQNAHLLAEPCFTVTSYR 121
           CGQNAH+ AEPCFTV SYR
Sbjct: 494 CGQNAHMFAEPCFTVGSYR 512

Query: 122  181
           
Sbjct: 554  512

Query: 182  239
           
Sbjct: 614  512

[Close]

BLAST of CU110808 vs. TrEMBL
Match: V4UQJ9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v100113371mg PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-34
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           I EAIADARCYQVLRANE+EFEIVSTERTNIV+I SRVCSCRRWQLYGLPCAHAAAAL+S
Sbjct: 434 IMEAIADARCYQVLRANEIEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALLS 493

Query: 62  CGQNAHLLAEPCFTVTSYR 121
           CGQN HL AEPCFTV SYR
Sbjct: 494 CGQNVHLFAEPCFTVASYR 512

Query: 122  181
           
Sbjct: 554  512

Query: 182  239
           
Sbjct: 614  512

[Close]

BLAST of CU110808 vs. NCBI nr
Match: gi|449442265|ref|XP_004138902.1| (PREDICTED: uncharacterized protein LOC101220272 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS
Sbjct: 434 IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 493

Query: 62  CGQNAHLLAEPCFTVTSYR 121
           CGQNAHL AEPCFTVTSYR
Sbjct: 494 CGQNAHLFAEPCFTVTSYR 512

Query: 122  181
           
Sbjct: 554  512

Query: 182  239
           
Sbjct: 614  512

[Close]

BLAST of CU110808 vs. NCBI nr
Match: gi|659082246|ref|XP_008441740.1| (PREDICTED: uncharacterized protein LOC103485812 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS
Sbjct: 434 IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 493

Query: 62  CGQNAHLLAEPCFTVTSYR 121
           CGQNAHL AEPCFTVTSYR
Sbjct: 494 CGQNAHLFAEPCFTVTSYR 512

Query: 122  181
           
Sbjct: 554  512

Query: 182  239
           
Sbjct: 614  512

[Close]

BLAST of CU110808 vs. NCBI nr
Match: gi|802754907|ref|XP_012088790.1| (PREDICTED: uncharacterized protein LOC105647353 [Jatropha curcas])

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-34
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           I EAIADARCYQVLRANE+EFEIVSTERTNIV+I SRVCSCRRWQLYGLPCAHAAAAL+S
Sbjct: 434 ILEAIADARCYQVLRANEIEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALIS 493

Query: 62  CGQNAHLLAEPCFTVTSYRR--NLFTNDIP 121
           CGQNAHL AEPCFTV SYR   +   N IP
Sbjct: 494 CGQNAHLFAEPCFTVVSYRETYSQMINPIP 523

Query: 122  181
           
Sbjct: 554  523

Query: 182  241
           
Sbjct: 614  523

Query: 242  266
           
Sbjct: 674  523

[Close]

BLAST of CU110808 vs. NCBI nr
Match: gi|590598964|ref|XP_007019050.1| (MuDR family transposase isoform 1 [Theobroma cacao])

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-34
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           I EAIADARCYQVLRANE+EFEIVSTERTNIV+I SRVCSCRRWQLYGLPCAHAAAAL+S
Sbjct: 485 ILEAIADARCYQVLRANEIEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALIS 544

Query: 62  CGQNAHLLAEPCFTVTSYRR--NLFTNDIP 121
           CGQNAHL AEPCFTV SYR   +   N IP
Sbjct: 545 CGQNAHLFAEPCFTVASYRETYSQMINPIP 574

Query: 122  181
           
Sbjct: 605  574

Query: 182  241
           
Sbjct: 665  574

Query: 242  266
           
Sbjct: 725  574

[Close]

BLAST of CU110808 vs. NCBI nr
Match: gi|823262209|ref|XP_012463849.1| (PREDICTED: uncharacterized protein LOC105783147 [Gossypium raimondii])

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-34
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 2


Query: 2   IAEAIADARCYQVLRANEVEFEIVSTERTNIVEIHSRVCSCRRWQLYGLPCAHAAAALMS 61
           I+EAIADARCYQVLRANEVEFEIVSTERTNIV+I SRVCSCRRWQLYGLPCAHAAAAL+S
Sbjct: 434 ISEAIADARCYQVLRANEVEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALIS 493

Query: 62  CGQNAHLLAEPCFTVTSYR 121
           CGQNAH+ AEPCFTV SYR
Sbjct: 494 CGQNAHMFAEPCFTVGSYR 512

Query: 122  181
           
Sbjct: 554  512

Query: 182  239
           
Sbjct: 614  512

The following BLAST results are available for this feature:

BLAST of CU110808 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN02_CUCSA	7.8e-38	98.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G094910 PE=4 SV=1	[more]
A0A061FG29_THECC	6.2e-35	83.33	MuDR family transposase isoform 1 OS=Theobroma cacao GN=TCM_035107 PE=4 SV=1	[more]
A0A067JKI4_JATCU	6.2e-35	83.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23146 PE=4 SV=1	[more]
A0A0D2U3A4_GOSRA	1.1e-34	91.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G180100 PE=4 SV=1	[more]
V4UQJ9_9ROSI	1.8e-34	89.87	Uncharacterized protein OS=Citrus clementina GN=CICLE_v100113371mg PE=4 SV=1	[more]

BLAST of CU110808 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442265\|ref\|XP_004138902.1\|	3.3e-37	98.73	PREDICTED: uncharacterized protein LOC101220272 [Cucumis sativus]	[more]
gi\|659082246\|ref\|XP_008441740.1\|	3.3e-37	98.73	PREDICTED: uncharacterized protein LOC103485812 [Cucumis melo]	[more]
gi\|802754907\|ref\|XP_012088790.1\|	2.0e-34	83.33	PREDICTED: uncharacterized protein LOC105647353 [Jatropha curcas]	[more]
gi\|590598964\|ref\|XP_007019050.1\|	2.0e-34	83.33	MuDR family transposase isoform 1 [Theobroma cacao]	[more]
gi\|823262209\|ref\|XP_012463849.1\|	4.4e-34	91.14	PREDICTED: uncharacterized protein LOC105783147 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006564	Znf_PMZ
IPR007527	Znf_SWIM

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G094910	Csa2G094910	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0183895	G0183895	EST
H0048633	H0048633	EST
H0164919	H0164919	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 38..65 score: 1.
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 40..62 score: 2.
IPR007527	Zinc finger, SWIM-type	PROFILE	PS50966	ZF_SWIM	coord: 22..63 score: 10
None	No IPR available	PANTHER	PTHR31973	FAMILY NOT NAMED	coord: 2..81 score: 4.0
None	No IPR available	PANTHER	PTHR31973:SF22	SUBFAMILY NOT NAMED	coord: 2..81 score: 4.0