CU110454 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU110454
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	T23G18.18
Location	Chr6 : 17903853 .. 17904324 (+)
Sequence length	472

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCACATCTTCCGCCGCCCTATCGCCGCCCCATTTAGCTAAATTCAACAACGCCGATACCGCGTTCTCCTTCGTTCTCAAACTCGAACCAGTCCCCGAATCCAACAAATCCACCAAAACCCCCAATCCAGAAACCCTACGAAATGCCAATTCGCTCTCTTCACATCCCGCCACCTGCGCAACCACCGCCGACGCATCTTCGACAATCCCAGCGTGACCGCCGACCACAACCAAAGAGAATAGCGGCGGAATCACCCCAAGATCTACCATAGTAGATCGATTGGACTGGTGAAGCGCAATTCCAAAACAACGCTTTCAAAGCATCCTTAATGGATCTCTGAGGAGATTTCCTATACTTAAGAATATCAACAAGAGAATAGATTATATCACGCTTGGAACCAATAATCGGGCGGTACTCATCCACAACGAGAAGACTATGAAGAGTGGCAGCACAGGATTGAACAGCAGAGGAGG

Library


Library category	ESTs
fruit (8DPP) library	3
gynoecious flower library	2

Homology

[Close]

BLAST of CU110454 vs. TrEMBL
Match: A0A0A0KDY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401390 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.8e-38
Identity = 88/104 (84.62%), Postives = 88/104 (84.62%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  FGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR
Sbjct: 158 KALFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 217

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSSLRTKENAVSALLNLAKWGGDRAAEDV
Sbjct: 218 VSGLGVLVDLLDSGTGSSLRTKENAVSALLNLAKWGGDRAAEDV 261

Query: 122  181
           
Sbjct: 278  261

Query: 182  241
           
Sbjct: 338  261

Query: 242  301
           
Sbjct: 398  261

Query: 302  314
           
Sbjct: 458  261

[Close]

BLAST of CU110454 vs. TrEMBL
Match: A0A0A0KDY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401390 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = -3


Query: 303 SSAVQSCAATLHSLLVVDEYRPIIGSKRDIIYSLVDILKYRKSPQRSIKDALKALF 362
           SSAVQSCAATLHSLLVVDEYRPIIGSKRDIIYSLVDILKYRKSPQRSIKDALKALF
Sbjct: 106 SSAVQSCAATLHSLLVVDEYRPIIGSKRDIIYSLVDILKYRKSPQRSIKDALKALF 161

Query: 363  422
           
Sbjct: 166  161

Query: 423  471
           
Sbjct: 226  161

HSP 2 Score: 115.9 bits (289), Expect = 4.4e-23
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  FG +L+  NRSTM+ LG++PPLF L++  G  G+VED +AVVAQ+AGCEESE AFRR
Sbjct: 159 KALFGASLYALNRSTMIQLGIVPPLFGLILKDGRVGLVEDTTAVVAQIAGCEESEEAFRR 218

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSS+R KEN+VSALLNLA+ GG+   EDV
Sbjct: 219 VSGVGVLVDLLDAATGSSIRIKENSVSALLNLARCGGEGVVEDV 262

Query: 122  181
           
Sbjct: 279  262

Query: 182  241
           
Sbjct: 339  262

Query: 242  301
           
Sbjct: 399  262

Query: 302  314
           
Sbjct: 459  262

[Close]

BLAST of CU110454 vs. TrEMBL
Match: A0A059BIG7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_G03226 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = -3


Query: 303 SAVQSCAATLHSLLVVDEYRPIIGSKRDIIYSLVDILKYRKSPQRSIKDALKALF 362
           +AVQ  AATLHSLL+VD YRPIIG+KRDIIY+L+DI+K  +SP RS+KDALKALF
Sbjct: 108 AAVQGAAATLHSLLIVDSYRPIIGAKRDIIYALIDIVKSPRSPPRSVKDALKALF 162

Query: 363  422
           
Sbjct: 168  162

Query: 423  468
           
Sbjct: 228  162

HSP 2 Score: 115.9 bits (289), Expect = 4.4e-23
Identity = 62/104 (59.62%), Postives = 71/104 (68.27%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  FGIAL+  NR T++DLG + PLFSLV+  G  GIVEDA+AVVAQ+AGCEESE  F R
Sbjct: 158 KAMFGIALYPLNRCTLIDLGAVAPLFSLVLKDGRVGIVEDATAVVAQIAGCEESEGEFAR 217

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSSLR KENAVSALLNL + GG+R A DV
Sbjct: 218 YSGVGILIDLLDLATGSSLRIKENAVSALLNLVRCGGERVAADV 261

Query: 122  181
           
Sbjct: 278  261

Query: 182  241
           
Sbjct: 338  261

Query: 242  301
           
Sbjct: 398  261

Query: 302  314
           
Sbjct: 458  261

[Close]

BLAST of CU110454 vs. TrEMBL
Match: B9RG87_RICCO (Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1452200 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = -3


Query: 303 AVQSCAATLHSLLVVDEYRPIIGSKRDIIYSLVDILKYRKSPQRSIKDALKALF 362
           AVQS AATLHSLL+VD YRPIIGSKRDI+YSL+DI+K   SP RS+KDALKA+F
Sbjct: 108 AVQSSAATLHSLLIVDSYRPIIGSKRDIVYSLIDIVKSPNSPPRSVKDALKAMF 161

Query: 363  422
           
Sbjct: 168  161

Query: 423  465
           
Sbjct: 228  161

HSP 2 Score: 115.5 bits (288), Expect = 5.7e-23
Identity = 62/104 (59.62%), Postives = 71/104 (68.27%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  F IALH  NR+TMV  GV+P LFSL+V  G  GIVEDASAV+AQVAGCEES  AF++
Sbjct: 160 KALFAIALHPLNRATMVQFGVVPALFSLIVNDGRVGIVEDASAVIAQVAGCEESVEAFKK 219

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSS+RT+ENAVSALLNL + GGD  A DV
Sbjct: 220 VSGVGVLADLLDLATGSSMRTRENAVSALLNLVRCGGDVVAGDV 263

Query: 122  181
           
Sbjct: 280  263

Query: 182  241
           
Sbjct: 340  263

Query: 242  301
           
Sbjct: 400  263

Query: 302  314
           
Sbjct: 460  263

[Close]

BLAST of CU110454 vs. TrEMBL
Match: G7LGS1_MEDTR (Armadillo/beta-catenin repeat protein, putative OS=Medicago truncatula GN=MTR_8g039560 PE=4 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10
Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = -3


Query: 303 SSAVQSCAATLHSLLV-VDEYRPIIGSKRDIIYSLVDILK-YRKSPQRSIKDALKALF 362
           ++AVQS AAT+HSLL  VD+YR ++GSKR+I+Y+LVDIL+ +R SP R++KD+LKALF
Sbjct: 106 AAAVQSAAATIHSLLSSVDDYRTVVGSKREIVYALVDILRCHRSSPPRTVKDSLKALF 163

Query: 363  422
           
Sbjct: 166  163

Query: 423  471
           
Sbjct: 226  163

HSP 2 Score: 114.8 bits (286), Expect = 9.7e-23
Identity = 62/104 (59.62%), Postives = 70/104 (67.31%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  F +ALH +NRSTM+ LG IP LFSL+V     GIVEDA+AV+AQVAGCEESE   RR
Sbjct: 160 KALFAVALHPANRSTMISLGAIPALFSLIVKDSRCGIVEDATAVMAQVAGCEESEEGMRR 219

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSSLR KENAVSALLNLA+ GGD A  +V
Sbjct: 220 VSGASVLADLLDPCTGSSLRIKENAVSALLNLARCGGDEARLEV 263

Query: 122  181
           
Sbjct: 280  263

Query: 182  241
           
Sbjct: 340  263

Query: 242  301
           
Sbjct: 400  263

Query: 302  314
           
Sbjct: 460  263

[Close]

BLAST of CU110454 vs. NCBI nr
Match: gi|449458065|ref|XP_004146768.1| (PREDICTED: protein spotted leaf 11 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 4.0e-38
Identity = 88/104 (84.62%), Postives = 88/104 (84.62%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  FGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR
Sbjct: 158 KALFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 217

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSSLRTKENAVSALLNLAKWGGDRAAEDV
Sbjct: 218 VSGLGVLVDLLDSGTGSSLRTKENAVSALLNLAKWGGDRAAEDV 261

Query: 122  181
           
Sbjct: 278  261

Query: 182  241
           
Sbjct: 338  261

Query: 242  301
           
Sbjct: 398  261

Query: 302  314
           
Sbjct: 458  261

[Close]

BLAST of CU110454 vs. NCBI nr
Match: gi|659089251|ref|XP_008445408.1| (PREDICTED: protein spotted leaf 11 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 4.0e-38
Identity = 88/104 (84.62%), Postives = 88/104 (84.62%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  FGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR
Sbjct: 158 KALFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 217

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSSLRTKENAVSALLNLAKWGGDRAAEDV
Sbjct: 218 VSGLGVLVDLLDSGTGSSLRTKENAVSALLNLAKWGGDRAAEDV 261

Query: 122  181
           
Sbjct: 278  261

Query: 182  241
           
Sbjct: 338  261

Query: 242  301
           
Sbjct: 398  261

Query: 302  314
           
Sbjct: 458  261

[Close]

BLAST of CU110454 vs. NCBI nr
Match: gi|1009171233|ref|XP_015866633.1| (PREDICTED: U-box domain-containing protein 11 [Ziziphus jujuba])

HSP 1 Score: 117.1 bits (292), Expect = 2.8e-23
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  FGIAL+  NRS++++LG +PPLFSLVV  G  GIVEDA+AVVAQ+AGCEESE AF +
Sbjct: 163 KALFGIALYPLNRSSLIELGAVPPLFSLVVKDGRVGIVEDATAVVAQIAGCEESEEAFLK 222

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSSLRTKENAVS LLNL + GG++  ++V
Sbjct: 223 AKGVGVMADLLDPSTGSSLRTKENAVSGLLNLGRCGGEKVGKEV 266

Query: 122  181
           
Sbjct: 283  266

Query: 182  241
           
Sbjct: 343  266

Query: 242  301
           
Sbjct: 403  266

Query: 302  314
           
Sbjct: 463  266

[Close]

BLAST of CU110454 vs. NCBI nr
Match: gi|629100138|gb|KCW65903.1| (hypothetical protein EUGRSUZ_G03226, partial [Eucalyptus grandis])

HSP 1 Score: 115.9 bits (289), Expect = 6.2e-23
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  FG +L+  NRSTM+ LG++PPLF L++  G  G+VED +AVVAQ+AGCEESE AFRR
Sbjct: 159 KALFGASLYALNRSTMIQLGIVPPLFGLILKDGRVGLVEDTTAVVAQIAGCEESEEAFRR 218

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSS+R KEN+VSALLNLA+ GG+   EDV
Sbjct: 219 VSGVGVLVDLLDAATGSSIRIKENSVSALLNLARCGGEGVVEDV 262

Query: 122  181
           
Sbjct: 279  262

Query: 182  241
           
Sbjct: 339  262

Query: 242  301
           
Sbjct: 399  262

Query: 302  314
           
Sbjct: 459  262

[Close]

BLAST of CU110454 vs. NCBI nr
Match: gi|255543953|ref|XP_002513039.1| (PREDICTED: U-box domain-containing protein 11 [Ricinus communis])

HSP 1 Score: 115.9 bits (289), Expect = 6.2e-23
Identity = 62/104 (59.62%), Postives = 71/104 (68.27%), Query Frame = -1


Query: 2   KRCFGIALHQSNRSTMVDLGVIPPLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRR 61
           K  FGIAL+  NR T++DLG + PLFSLV+  G  GIVEDA+AVVAQ+AGCEESE  F R
Sbjct: 158 KAMFGIALYPLNRCTLIDLGAVAPLFSLVLKDGRVGIVEDATAVVAQIAGCEESEGEFAR 217

Query: 62  XXXXXXXXXXXXXXTGSSLRTKENAVSALLNLAKWGGDRAAEDV 121
                         TGSSLR KENAVSALLNL + GG+R A DV
Sbjct: 218 YSGVGILIDLLDLATGSSLRIKENAVSALLNLVRCGGERVAADV 261

Query: 122  181
           
Sbjct: 278  261

Query: 182  241
           
Sbjct: 338  261

Query: 242  301
           
Sbjct: 398  261

Query: 302  314
           
Sbjct: 458  261

The following BLAST results are available for this feature:

BLAST of CU110454 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDY4_CUCSA	2.8e-38	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401390 PE=4 SV=1	[more]
A0A0A0KDY4_CUCSA	3.1e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401390 PE=4 SV=1	[more]
A0A059BIG7_EUCGR	4.8e-14	74.55	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_G03226 PE=4 ...	[more]
B9RG87_RICCO	2.2e-14	77.78	Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1452200 PE=4 SV=1	[more]
G7LGS1_MEDTR	2.5e-10	63.79	Armadillo/beta-catenin repeat protein, putative OS=Medicago truncatula GN=MTR_8g...	[more]

BLAST of CU110454 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458065\|ref\|XP_004146768.1\|	4.0e-38	84.62	PREDICTED: protein spotted leaf 11 [Cucumis sativus]	[more]
gi\|659089251\|ref\|XP_008445408.1\|	4.0e-38	84.62	PREDICTED: protein spotted leaf 11 [Cucumis melo]	[more]
gi\|1009171233\|ref\|XP_015866633.1\|	2.8e-23	57.69	PREDICTED: U-box domain-containing protein 11 [Ziziphus jujuba]	[more]
gi\|629100138\|gb\|KCW65903.1\|	6.2e-23	55.77	hypothetical protein EUGRSUZ_G03226, partial [Eucalyptus grandis]	[more]
gi\|255543953\|ref\|XP_002513039.1\|	6.2e-23	59.62	PREDICTED: U-box domain-containing protein 11 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000225	Armadillo
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005488	binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G401390	Csa6G401390	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K6A72	FKNP3UI02K6A72	EST
FKNP3UI02OJJBU	FKNP3UI02OJJBU	EST
FKNP3UI02OXKD9	FKNP3UI02OXKD9	EST
G0162401	G0162401	EST
G0185723	G0185723	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000225	Armadillo	SMART	SM00185	arm_5	coord: 62..103 score: 1.2coord: 104..147 score:
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 6..147 score: 4.4
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 4..152 score: 1.23
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 2..155 score: 2.0
None	No IPR available	PANTHER	PTHR23315:SF57	ARMADILLO/BETA-CATENIN-LIKE REPEAT-CONTAINING PROTEIN	coord: 2..155 score: 2.0