CU110417 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU110417
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 12607614 .. 12607864 (-)
Sequence length258
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGCTCTCGAAACCAACGGGACTTTTGTATTCATCCTCCAAAAATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGTCTTCCTCATTCTCGCTCCTCATTTTGTCTTCTCCATGGCGGCCGCCGTCGATTTCTCTGGCGACCACGAGCTTCTCTTCGTTCCCACCACGTCCGATTTCTTCGACGACAACGATGATTTCGGTTTCGGAATGGAGTTCCAGATGGACTCTGAGATCAATCGCCGAATTCTGGCG
BLAST of CU110417 vs. TrEMBL
Match: A0A0A0KBU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194150 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-21
Identity = 58/70 (82.86%), Postives = 58/70 (82.86%), Query Frame = 1

Query: 49  MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSXXXXXXXXXXXXMEFQM 108
           MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTS            MEFQM
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60

Query: 109 DSEINRRILA 168
           DSEINRRILA
Sbjct: 61  DSEINRRILA 70

Query: 169 228
           
Sbjct: 121 70

Query: 229 259
           
Sbjct: 181 70

BLAST of CU110417 vs. NCBI nr
Match: gi|449450680|ref|XP_004143090.1| (PREDICTED: protein RALF-like 33 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 7.1e-21
Identity = 58/70 (82.86%), Postives = 58/70 (82.86%), Query Frame = 1

Query: 49  MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSXXXXXXXXXXXXMEFQM 108
           MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTS            MEFQM
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60

Query: 109 DSEINRRILA 168
           DSEINRRILA
Sbjct: 61  DSEINRRILA 70

Query: 169 228
           
Sbjct: 121 70

Query: 229 259
           
Sbjct: 181 70

BLAST of CU110417 vs. NCBI nr
Match: gi|659117160|ref|XP_008458453.1| (PREDICTED: protein RALF-like 33 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-16
Identity = 52/71 (73.24%), Postives = 55/71 (77.46%), Query Frame = 1

Query: 49  MGISRVS-SLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSXXXXXXXXXXXXMEFQ 108
           MGISRVS SLLA FLI+A HF+ SMAAAVDFSGDH+LLFVPTTS            MEFQ
Sbjct: 1   MGISRVSSSLLAAFLIIAAHFLVSMAAAVDFSGDHKLLFVPTTSDFFNDNDDFGFGMEFQ 60

Query: 109 MDSEINRRILA 168
           MDSEINRRILA
Sbjct: 61  MDSEINRRILA 71

Query: 169 228
           
Sbjct: 121 71

Query: 229 259
           
Sbjct: 181 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KBU7_CUCSA2.9e-2182.86Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194150 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449450680|ref|XP_004143090.1|7.1e-2182.86PREDICTED: protein RALF-like 33 [Cucumis sativus][more]
gi|659117160|ref|XP_008458453.1|3.1e-1673.24PREDICTED: protein RALF-like 33 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G194150Csa6G194150gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02L9OMIFKNP3UI02L9OMIEST
FKNP3UI02ND9WFFKNP3UI02ND9WFEST
FKNP3UI02NNERPFKNP3UI02NNERPEST
FKNP3UI02OA8HKFKNP3UI02OA8HKEST
FKNP3UI02OGTUVFKNP3UI02OGTUVEST
G0106429G0106429EST