CU110012 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU110012
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	F16L1.4 protein
Location	Chr2 : 15418178 .. 15418857 (+)
Sequence length	675

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGTTCATGGTTTTACAGGAAGGCGAAGAAGAAACCAAAACCCATAAACAACGACGCCGTTTCTTCACTCGAATTCCAACCTTCCTCTGTTTCTGTTCCTCCCCCAAATGCTCTCTTACTTATGCGTTGCAGGTCAGCCCCAAATTCTCTTTTACGAAAACCAAAACAACAAGAAGAAAAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAATCGAAAATCAGCTTGAAGTTGTTAATGGAGGAAGAGAAAGAAATGGTGACTGCGAAGAAGAAAAGCTTGATGGTAATGGATTATGATGCTGATTTTTACAAACTTTCATCAGACATTGCTAAAGAAACATGGGTTGTGAGTGGATCAAGTACCAGTAGTAGTAGTAGTAGATGTAATGACGATCCATTGTTGAGAAGTCGAAGCTGGAAGAGATGATGAAGATCGAACAACTCAAATCAAATAAAAAATTAAAAGAAAAAACTCTTGTGCTCTGCTTCCCTTGTTTTCTAATTTCCATGAAATTTCTGCCAAGAACTTGAAAACCCCACATGAGATTTTTGAAGATCTGATATGGGTTTTGTTTACTTTCTTTGAATCTGTAATAGATTAATATGAACATGATGTACAGTGAAATTTTACGATTATCTTAATTTTCAGCTTCAAAGCTTTCATTG

Library


Library category	ESTs
Cucumber fruit library	1
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU110012 vs. TrEMBL
Match: A0A0A0LMI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345900 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.0e-33
Identity = 84/137 (61.31%), Postives = 89/137 (64.96%), Query Frame = 2


Query: 8   WFY--RKAKKKPKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQ--X 67
           WF   ++ +++ KPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQ   
Sbjct: 185 WFMVLQEGEEETKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQEEK 244

Query: 68  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTAKKKSLMVMDYDADFYKLSSDIAKETWV 127
                                         VTAKKKSLMVMDYDADFYKLSSDIAKETWV
Sbjct: 245 EEEEEEEEEEEEEEKSKISLKLLMEEEKEMVTAKKKSLMVMDYDADFYKLSSDIAKETWV 304

Query: 128 VXXXXXXXXXXRCNDDP 187
           V          RCNDDP
Sbjct: 305 VSGSSTSSSSSRCNDDP 321

Query: 188  247
           
Sbjct: 365  321

Query: 248  307
           
Sbjct: 425  321

Query: 308  367
           
Sbjct: 485  321

Query: 368  407
           
Sbjct: 545  321

[Close]

BLAST of CU110012 vs. TrEMBL
Match: A0A0A0LMI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345900 PE=4 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 1.2e+03
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1


Query: 1   WFMVLQEGEEETK 40
           WFMVLQEGEEETK
Sbjct: 185 WFMVLQEGEEETK 197

HSP 2 Score: 76.6 bits (187), Expect = 4.2e-11
Identity = 49/115 (42.61%), Postives = 61/115 (53.04%), Query Frame = 2


Query: 20  KAKKKPKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNS--LLRKPKQQXXXXXXX 79
           K KKK K  +++++++        SVPPPNALLLMRCRSAP    L  K  ++       
Sbjct: 224 KEKKKDKCFSDESIATS-------SVPPPNALLLMRCRSAPAKSWLEEKEGEEEEEEEEE 283

Query: 80  XXXXXXXXXXXXXXXXXXXXXXXXVTAKKKSLMVMDYDADFYKLSSDIAKETWVV 139
                                    +AKK+SL+VM YD DFYKLSSDIAKETWVV
Sbjct: 284 EEEQQEQEEKKGKKLKALIEEEKRNSAKKESLVVMRYDTDFYKLSSDIAKETWVV 331

Query: 140  199
           
Sbjct: 344  331

Query: 200  259
           
Sbjct: 404  331

Query: 260  319
           
Sbjct: 464  331

Query: 320  359
           
Sbjct: 524  331

[Close]

BLAST of CU110012 vs. TrEMBL
Match: U7DXR2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1092s00200g PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 2


Query: 8   WFYRKAKKKPKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQXXXXX 67
           +F   AK+K +  N++++++        SVPPPNALLLMRCRSAP    ++ +++     
Sbjct: 220 FFKEDAKQKERSCNDESLAA-------PSVPPPNALLLMRCRSAPAKSWQEEEEEEEEEE 279

Query: 68  XXXXXXXXXXXXXXXXXXXXXXXXXXVTAKKKSLMVMDYDADFYKLSSDIAKETWVV 127
                                       +KK++L+VM YD DFYKLS+DIAKETWVV
Sbjct: 280 QDRKQEEKKGKNLKALMEEEGK-----NSKKENLVVMSYDTDFYKLSTDIAKETWVV 324

Query: 128  187
           
Sbjct: 340  324

Query: 188  247
           
Sbjct: 400  324

Query: 248  307
           
Sbjct: 460  324

Query: 308  359
           
Sbjct: 520  324

[Close]

BLAST of CU110012 vs. TrEMBL
Match: B9H745_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16940g PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-09
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 2


Query: 11  FYRKAKKKPKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQXXXXXX 70
           F  + K+K +  N+++V++        SVPPPNALLLMRCRSAP    ++ ++       
Sbjct: 221 FKEEIKQKQRSCNDESVAA-------PSVPPPNALLLMRCRSAPAKSWQEEEEDEKEEEE 280

Query: 71  XXXXXXXXXXXXXXXXXXXXXXXXXVTAKKKSLMVMDYDADFYKLSSDIAKETWVV 130
                                      +KK++L+VM YD DF KLS+DIAKETWVV
Sbjct: 281 EEDRKEEEKKGKNLKALMEEEKR---NSKKENLVVMSYDTDFNKLSTDIAKETWVV 326

Query: 131  190
           
Sbjct: 341  326

Query: 191  250
           
Sbjct: 401  326

Query: 251  310
           
Sbjct: 461  326

Query: 311  359
           
Sbjct: 521  326

[Close]

BLAST of CU110012 vs. TrEMBL
Match: B9RJI3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1034900 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 41/94 (43.62%), Postives = 47/94 (50.00%), Query Frame = 2


Query: 92  SVPPPNALLLMRCRSAPNSLLRKPKQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV- 151
           SVPPPNALLLMRCRSAP     + KQ+                               + 
Sbjct: 44  SVPPPNALLLMRCRSAPAKSWLEKKQEEEEEEEEEEEEEEEDEDMETEEIKGKNLKALIE 103

Query: 152 ----TAKKKSLMVMDYDADFYKLSSDIAKETWVV 211
                 KK+SL+VM YD DFYK S+DIAKETWVV
Sbjct: 104 EEKRNMKKESLVVMRYDTDFYKCSTDIAKETWVV 137

Query: 212  271
           
Sbjct: 164  137

Query: 272  331
           
Sbjct: 224  137

Query: 332  359
           
Sbjct: 284  137

[Close]

BLAST of CU110012 vs. NCBI nr
Match: gi|778670370|ref|XP_004143011.2| (PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-like [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 84/137 (61.31%), Postives = 89/137 (64.96%), Query Frame = 2


Query: 8   WFY--RKAKKKPKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQ--X 67
           WF   ++ +++ KPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQ   
Sbjct: 185 WFMVLQEGEEETKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQEEK 244

Query: 68  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTAKKKSLMVMDYDADFYKLSSDIAKETWV 127
                                         VTAKKKSLMVMDYDADFYKLSSDIAKETWV
Sbjct: 245 EEEEEEEEEEEEEEKSKISLKLLMEEEKEMVTAKKKSLMVMDYDADFYKLSSDIAKETWV 304

Query: 128 VXXXXXXXXXXRCNDDP 187
           V          RCNDDP
Sbjct: 305 VSGSSTSSSSSRCNDDP 321

Query: 188  247
           
Sbjct: 365  321

Query: 248  307
           
Sbjct: 425  321

Query: 308  367
           
Sbjct: 485  321

Query: 368  407
           
Sbjct: 545  321

[Close]

BLAST of CU110012 vs. NCBI nr
Match: gi|659089129|ref|XP_008445342.1| (PREDICTED: uncharacterized protein LOC103488403 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 2.1e-32
Identity = 83/135 (61.48%), Postives = 89/135 (65.93%), Query Frame = 2


Query: 8   WFY--RKAKKKPKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQXXX 67
           WF   ++ +++ KPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQ+   
Sbjct: 185 WFMVLQEEEEETKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQE--- 244

Query: 68  XXXXXXXXXXXXXXXXXXXXXXXXXXXXVTAKKKSLMVMDYDADFYKLSSDIAKETWVVX 127
                                       VTAKKKSLMVMDYDADFYKLSSDIAKETWVV 
Sbjct: 245 --QEQEQEQEEEKSKISLKLLMEEEKEMVTAKKKSLMVMDYDADFYKLSSDIAKETWVVS 304

Query: 128 XXXXXXXXXRCNDDP 187
                    RCNDDP
Sbjct: 305 GSSTSSSSSRCNDDP 314

Query: 188  247
           
Sbjct: 365  314

Query: 248  307
           
Sbjct: 425  314

Query: 308  367
           
Sbjct: 485  314

Query: 368  407
           
Sbjct: 545  314

[Close]

BLAST of CU110012 vs. NCBI nr
Match: gi|802569026|ref|XP_012067844.1| (PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 49/115 (42.61%), Postives = 61/115 (53.04%), Query Frame = 2


Query: 20  KAKKKPKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNS--LLRKPKQQXXXXXXX 79
           K KKK K  +++++++        SVPPPNALLLMRCRSAP    L  K  ++       
Sbjct: 224 KEKKKDKCFSDESIATS-------SVPPPNALLLMRCRSAPAKSWLEEKEGEEEEEEEEE 283

Query: 80  XXXXXXXXXXXXXXXXXXXXXXXXVTAKKKSLMVMDYDADFYKLSSDIAKETWVV 139
                                    +AKK+SL+VM YD DFYKLSSDIAKETWVV
Sbjct: 284 EEEQQEQEEKKGKKLKALIEEEKRNSAKKESLVVMRYDTDFYKLSSDIAKETWVV 331

Query: 140  199
           
Sbjct: 344  331

Query: 200  259
           
Sbjct: 404  331

Query: 260  319
           
Sbjct: 464  331

Query: 320  359
           
Sbjct: 524  331

[Close]

BLAST of CU110012 vs. NCBI nr
Match: gi|566254156|ref|XP_006387404.1| (hypothetical protein POPTR_1092s00200g [Populus trichocarpa])

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 2


Query: 8   WFYRKAKKKPKPINNDAVSSLEFQPSSVSVPPPNALLLMRCRSAPNSLLRKPKQQXXXXX 67
           +F   AK+K +  N++++++        SVPPPNALLLMRCRSAP    ++ +++     
Sbjct: 220 FFKEDAKQKERSCNDESLAA-------PSVPPPNALLLMRCRSAPAKSWQEEEEEEEEEE 279

Query: 68  XXXXXXXXXXXXXXXXXXXXXXXXXXVTAKKKSLMVMDYDADFYKLSSDIAKETWVV 127
                                       +KK++L+VM YD DFYKLS+DIAKETWVV
Sbjct: 280 QDRKQEEKKGKNLKALMEEEGK-----NSKKENLVVMSYDTDFYKLSTDIAKETWVV 324

Query: 128  187
           
Sbjct: 340  324

Query: 188  247
           
Sbjct: 400  324

Query: 248  307
           
Sbjct: 460  324

Query: 308  359
           
Sbjct: 520  324

[Close]

BLAST of CU110012 vs. NCBI nr
Match: gi|727574691|ref|XP_010459964.1| (PREDICTED: uncharacterized protein LOC104740924 [Camelina sativa])

HSP 1 Score: 69.3 bits (168), Expect = 9.6e-09
Identity = 45/111 (40.54%), Postives = 53/111 (47.75%), Query Frame = 2


Query: 38  KPINNDAVSSLE--FQPSSVSVPPPNALLLMRCRSAP--NSLLRKPKQQXXXXXXXXXXX 97
           K  N + V   E  F     +VPPPNALLLMRCRSAP  N L  K  +            
Sbjct: 185 KQNNEECVDEKENAFSDVETAVPPPNALLLMRCRSAPVKNWLEEKEAETEEGGNTEKQSG 244

Query: 98  XXXXXXXXXXXXXXXXXXXXVTAKKKSLMVMDYDADFYKLSSDIAKETWVV 157
                                  KK +L+VMDYD ++YKLS+DIAKETWVV
Sbjct: 245 EKEEENDTVRKKKDLRSLMEEETKKMNLVVMDYDTNYYKLSADIAKETWVV 295

Query: 158  217
           
Sbjct: 305  295

Query: 218  277
           
Sbjct: 365  295

Query: 278  337
           
Sbjct: 425  295

Query: 338  359
           
Sbjct: 485  295

The following BLAST results are available for this feature:

BLAST of CU110012 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMI6_CUCSA	3.0e-33	61.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345900 PE=4 SV=1	[more]
A0A0A0LMI6_CUCSA	1.2e+03	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G345900 PE=4 SV=1	[more]
U7DXR2_POPTR	3.5e-10	37.61	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1092s00200g PE=4 SV=1	[more]
B9H745_POPTR	8.7e-09	37.07	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16940g PE=4 SV=1	[more]
B9RJI3_RICCO	1.5e-08	43.62	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1034900 PE=4 SV=1	[more]

BLAST of CU110012 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670370\|ref\|XP_004143011.2\|	1.2e-32	61.31	PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-like [Cuc...	[more]
gi\|659089129\|ref\|XP_008445342.1\|	2.1e-32	61.48	PREDICTED: uncharacterized protein LOC103488403 [Cucumis melo]	[more]
gi\|802569026\|ref\|XP_012067844.1\|	1.7e-10	42.61	PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]	[more]
gi\|566254156\|ref\|XP_006387404.1\|	1.1e-09	37.61	hypothetical protein POPTR_1092s00200g [Populus trichocarpa]	[more]
gi\|727574691\|ref\|XP_010459964.1\|	9.6e-09	40.54	PREDICTED: uncharacterized protein LOC104740924 [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G345900	Csa2G345900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
Cuc4_2_H03	Cuc4_2_H03	EST
H0052376	H0052376	EST
H0184814	H0184814	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 49..80 scor
None	No IPR available	PANTHER	PTHR33448	FAMILY NOT NAMED	coord: 25..145 score: 2.3
None	No IPR available	PANTHER	PTHR33448:SF3	SUBFAMILY NOT NAMED	coord: 25..145 score: 2.3