CU110000 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU110000
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCytoplasmic dynein 2 light intermediate chain 1
LocationChr1 : 90234 .. 90464 (+)
Sequence length239
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGAGAATAACATTGAATTAGAGATGACGGGATTTGGGCATGGACTGCGTGTAATTGGGAGACAGATGCATCTCCTTCATCAACGTGAAGGTCCATCAGAGGTTCTAAAGGGAAAGATCGCAGAGCTGGAGAAATTTAGGAAGATGAAGAGAAGTACGAAGAAGGATCAGTTCACTGTGGACGTTCCTGAATCAAATTCCTTCCTTGATACTCCTTCTATGCCCATGATCCTC
Library categoryESTs
fruit (8DPP) library3
BLAST of CU110000 vs. TrEMBL
Match: A0A0A0LR33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000630 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.8e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 3

Query: 30  MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 89
           MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF
Sbjct: 1   MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 60

Query: 90  LDTPSMPMIL 149
           LDTPSMPMIL
Sbjct: 61  LDTPSMPMIL 70

Query: 150 209
           
Sbjct: 121 70

Query: 210 240
           
Sbjct: 181 70

BLAST of CU110000 vs. TrEMBL
Match: B9NF27_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s16740g PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-09
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 3

Query: 36  GFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRK-MKRSTKKDQFTVDVPESNSFL 95
           GFG  +   GR +H    R+G +E LK ++ ELEK R+  K+S KKD   V VPES SFL
Sbjct: 8   GFGKAVMSCGRHLHTTVSRDGATETLKRRVTELEKIRRSKKKSKKKDDIFVQVPESLSFL 67

Query: 96  DTPSMPMIL 155
           DT +MPMIL
Sbjct: 68  DTATMPMIL 76

Query: 156 215
           
Sbjct: 128 76

Query: 216 240
           
Sbjct: 188 76

BLAST of CU110000 vs. TrEMBL
Match: A0A067E7B0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038886mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-09
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 3

Query: 30  MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 89
           M G G  L ++ R++H L  R+GPSE LK ++AELEK RK K   K D F V+VPES SF
Sbjct: 1   MFGVGQRLFLVQRRLHTL-SRDGPSESLKKRVAELEKTRKRKNVKKNDVF-VEVPESKSF 60

Query: 90  LDTPSMPMIL 149
           LDT S+PM L
Sbjct: 61  LDTASLPMFL 68

Query: 150 209
           
Sbjct: 121 68

Query: 210 240
           
Sbjct: 181 68

BLAST of CU110000 vs. TrEMBL
Match: V4UA82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016955mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-09
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 3

Query: 30  MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 89
           M G G  L ++ R++H L  R+GPSE LK ++AELEK RK K   K D F V+VPES SF
Sbjct: 1   MFGVGQRLFLVQRRLHTL-SRDGPSESLKKRVAELEKTRKRKNVKKNDVF-VEVPESKSF 60

Query: 90  LDTPSMPMIL 149
           LDT S+PM L
Sbjct: 61  LDTASLPMFL 68

Query: 150 209
           
Sbjct: 121 68

Query: 210 240
           
Sbjct: 181 68

BLAST of CU110000 vs. TrEMBL
Match: A0A0V0HEU4_SOLCH (Putative cytoplasmic dynein 2 light intermediate chain 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-08
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 3

Query: 48  GLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSFLDTPSM 107
           G+R   RQ+H L +  GPSE LK K+AEL K +K ++  +K+Q  V VP+S SFLDT +M
Sbjct: 3   GIRKFCRQVHTLSREFGPSETLKRKVAEL-KVKKKRKDPRKNQLFVQVPDSRSFLDTATM 62

Query: 108 PMIL 167
           PMIL
Sbjct: 63  PMIL 65

Query: 168 227
           
Sbjct: 123 65

Query: 228 240
           
Sbjct: 183 65

BLAST of CU110000 vs. NCBI nr
Match: gi|449440500|ref|XP_004138022.1| (PREDICTED: uncharacterized protein LOC101207324 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 9.1e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 3

Query: 30  MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 89
           MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF
Sbjct: 1   MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 60

Query: 90  LDTPSMPMIL 149
           LDTPSMPMIL
Sbjct: 61  LDTPSMPMIL 70

Query: 150 209
           
Sbjct: 121 70

Query: 210 240
           
Sbjct: 181 70

BLAST of CU110000 vs. NCBI nr
Match: gi|659128798|ref|XP_008464375.1| (PREDICTED: uncharacterized protein LOC103502279 isoform X2 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 3

Query: 30  MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 89
           MTGFGHGLRVIGRQ+HLL QREGPSEVL+GKIAELEKFRK K+S KKDQF VDVPESNSF
Sbjct: 1   MTGFGHGLRVIGRQVHLLQQREGPSEVLRGKIAELEKFRKRKKSMKKDQFIVDVPESNSF 60

Query: 90  LDTPSMPMIL 149
           LDTPSMPMIL
Sbjct: 61  LDTPSMPMIL 70

Query: 150 209
           
Sbjct: 121 70

Query: 210 240
           
Sbjct: 181 70

BLAST of CU110000 vs. NCBI nr
Match: gi|659128795|ref|XP_008464374.1| (PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 3

Query: 30  MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 89
           MTGFGHGLRVIGRQ+HLL QREGPSEVL+GKIAELEKFRK K+S KKDQF VDVPESNSF
Sbjct: 1   MTGFGHGLRVIGRQVHLLQQREGPSEVLRGKIAELEKFRKRKKSMKKDQFIVDVPESNSF 60

Query: 90  LDTPSMPMIL 149
           LDTPSMPMIL
Sbjct: 61  LDTPSMPMIL 70

Query: 150 209
           
Sbjct: 121 70

Query: 210 240
           
Sbjct: 181 70

BLAST of CU110000 vs. NCBI nr
Match: gi|747076668|ref|XP_011085414.1| (PREDICTED: uncharacterized protein LOC105167409 [Sesamum indicum])

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-09
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 3

Query: 30  MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 89
           M G   GL    + +H L  R+GPS+ L+ K+AELEK RK KR+ KK+Q  VDVPES SF
Sbjct: 1   MHGVRRGLAYFCKNLHTL-SRDGPSDTLRRKVAELEKKRK-KRNPKKNQLLVDVPESRSF 60

Query: 90  LDTPSMPMIL 149
           LDT +MPM+L
Sbjct: 61  LDTATMPMLL 68

Query: 150 209
           
Sbjct: 121 68

Query: 210 240
           
Sbjct: 181 68

BLAST of CU110000 vs. NCBI nr
Match: gi|567911033|ref|XP_006447830.1| (hypothetical protein CICLE_v10016955mg [Citrus clementina])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 3

Query: 30  MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 89
           M G G  L ++ R++H L  R+GPSE LK ++AELEK RK K   K D F V+VPES SF
Sbjct: 1   MFGVGQRLFLVQRRLHTL-SRDGPSESLKKRVAELEKTRKRKNVKKNDVF-VEVPESKSF 60

Query: 90  LDTPSMPMIL 149
           LDT S+PM L
Sbjct: 61  LDTASLPMFL 68

Query: 150 209
           
Sbjct: 121 68

Query: 210 240
           
Sbjct: 181 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LR33_CUCSA9.8e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000630 PE=4 SV=1[more]
B9NF27_POPTR2.3e-0952.17Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s16740g PE=4 SV=1[more]
A0A067E7B0_CITSI2.3e-0955.71Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038886mg PE=4 S... [more]
V4UA82_9ROSI2.3e-0955.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016955mg PE=4 SV=1[more]
A0A0V0HEU4_SOLCH2.0e-0853.13Putative cytoplasmic dynein 2 light intermediate chain 1-like OS=Solanum chacoen... [more]
Match NameE-valueIdentityDescription
gi|449440500|ref|XP_004138022.1|9.1e-31100.00PREDICTED: uncharacterized protein LOC101207324 [Cucumis sativus][more]
gi|659128798|ref|XP_008464375.1|1.4e-2690.00PREDICTED: uncharacterized protein LOC103502279 isoform X2 [Cucumis melo][more]
gi|659128795|ref|XP_008464374.1|1.4e-2690.00PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo][more]
gi|747076668|ref|XP_011085414.1|5.8e-0955.71PREDICTED: uncharacterized protein LOC105167409 [Sesamum indicum][more]
gi|567911033|ref|XP_006447830.1|2.2e-0855.71hypothetical protein CICLE_v10016955mg [Citrus clementina][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G000630Csa1G000630gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LFBKVFKNP3UI02LFBKVEST
FKNP3UI02LFHWHFKNP3UI02LFHWHEST
FKNP3UI02M61NAFKNP3UI02M61NAEST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36008FAMILY NOT NAMEDcoord: 11..80
score: 5.0