CU108784 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU108784
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionBeta-galactosidase
LocationChr1 : 25719571 .. 25719794 (+)
Sequence length226
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GGGTATTAGCTCAAATCGAGAATGAGTATGGAAATGTGATGACACCAGCTTATGGAGATGCAGGAAAAGCATACATCAATTGGTGTGCTCAAATGGCCGAATCTCTCAATATTGGCGTTCCATGGATCATGTGCCAACAAAGTGATGCCCCACAACCTATGATTAATACATGCAATGGATTCTATTGTGATAACTTTACTCCAAACAATCCTAAGAGACCCAAAAT
Homology
[Close]
BLAST of CU108784 vs. Swiss-Prot
Match: BGA15_ARATH (Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 6.5e-31
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNV+  +YG+AGKAYI WCA MA SL++GVPWIMCQQ DAPQPM+NTCNG+
Sbjct: 171 ILAQIENEYGNVIG-SYGEAGKAYIQWCANMANSLDVGVPWIMCQQDDAPQPMLNTCNGY 230

Query: 63  YCDNFTPNNPKRPK 122
           YCDNF+PNNP  PK
Sbjct: 231 YCDNFSPNNPNTPK 243

Query: 123  182
           
Sbjct: 291  243

Query: 183  225
           
Sbjct: 351  243

[Close]
BLAST of CU108784 vs. Swiss-Prot
Match: BGAL_BRAOL (Beta-galactosidase OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-27
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNV++ +YG  GKAYI+WCA MA SL+IGVPWIMCQQ  APQPMI TCNGF
Sbjct: 176 ILAQIENEYGNVIS-SYGAEGKAYIDWCANMANSLDIGVPWIMCQQPHAPQPMIETCNGF 235

Query: 63  YCDNFTPNNPKRPK 122
           YCD + P+NP  PK
Sbjct: 236 YCDQYKPSNPSSPK 248

Query: 123  182
           
Sbjct: 296  248

Query: 183  225
           
Sbjct: 356  248

[Close]
BLAST of CU108784 vs. Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-27
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNV++ +YG  GKAYI+WCA MA SL+IGVPW+MCQQ +APQPM+ TCNGF
Sbjct: 177 ILAQIENEYGNVIS-SYGAEGKAYIDWCANMANSLDIGVPWLMCQQPNAPQPMLETCNGF 236

Query: 63  YCDNFTPNNPKRPK 122
           YCD + P NP  PK
Sbjct: 237 YCDQYEPTNPSTPK 249

Query: 123  182
           
Sbjct: 297  249

Query: 183  225
           
Sbjct: 357  249

[Close]
BLAST of CU108784 vs. Swiss-Prot
Match: BGAL6_ORYSJ (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-26
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +L+QIENEYGN+ + AYG AGKAY+ W A MA SL+ GVPW+MCQQSDAP P+INTCNGF
Sbjct: 182 ILSQIENEYGNIDS-AYGAAGKAYMRWAAGMAVSLDTGVPWVMCQQSDAPDPLINTCNGF 241

Query: 63  YCDNFTPNNPKRPK 122
           YCD FTPN+  +PK
Sbjct: 242 YCDQFTPNSKSKPK 254

Query: 123  182
           
Sbjct: 302  254

Query: 183  225
           
Sbjct: 362  254

[Close]
BLAST of CU108784 vs. Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 5.4e-25
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +L+QIENEYGN+ + AYG A K+YI W A MA SL+ GVPW MCQQ+DAP PMINTCNGF
Sbjct: 181 ILSQIENEYGNIDS-AYGAAAKSYIKWSASMALSLDTGVPWNMCQQTDAPDPMINTCNGF 240

Query: 63  YCDNFTPNNPKRPK 122
           YCD FTPN+  +PK
Sbjct: 241 YCDQFTPNSNNKPK 253

Query: 123  182
           
Sbjct: 301  253

Query: 183  225
           
Sbjct: 361  253

[Close]
BLAST of CU108784 vs. TrEMBL
Match: A0A0A0M006_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_1G650110 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 8.6e-38
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF
Sbjct: 171 ILAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 230

Query: 63  YCDNFTPNNPKRPK 122
           YCDNFTPNNPK PK
Sbjct: 231 YCDNFTPNNPKSPK 244

Query: 123  182
           
Sbjct: 291  244

Query: 183  225
           
Sbjct: 351  244

[Close]
BLAST of CU108784 vs. TrEMBL
Match: A0A0A0KRM6_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_5G169120 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 8.6e-38
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF
Sbjct: 171 ILAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 230

Query: 63  YCDNFTPNNPKRPK 122
           YCDNFTPNNPK PK
Sbjct: 231 YCDNFTPNNPKSPK 244

Query: 123  182
           
Sbjct: 291  244

Query: 183  225
           
Sbjct: 351  244

[Close]
BLAST of CU108784 vs. TrEMBL
Match: A0A0A0LDH9_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_3G550690 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.5e-34
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNVMTP YG+AGK YINWCAQMAESLNIG+PWIMCQQSDAPQP+INTCNGF
Sbjct: 176 ILAQIENEYGNVMTP-YGEAGKTYINWCAQMAESLNIGIPWIMCQQSDAPQPIINTCNGF 235

Query: 63  YCDNFTPNNPKRPK 122
           YCDNFTPNNP  PK
Sbjct: 236 YCDNFTPNNPNSPK 248

Query: 123  182
           
Sbjct: 296  248

Query: 183  225
           
Sbjct: 356  248

[Close]
BLAST of CU108784 vs. TrEMBL
Match: A0A0A0LXX7_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_1G643050 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-33
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNVMTP YG+AGKAYINWCAQMAES NIGVPWIMCQQSDAPQP+INTCNGF
Sbjct: 154 ILAQIENEYGNVMTP-YGNAGKAYINWCAQMAESFNIGVPWIMCQQSDAPQPIINTCNGF 213

Query: 63  YCDNFTPNNPKRPK 122
           YCD+F+PNNPK PK
Sbjct: 214 YCDSFSPNNPKSPK 226

Query: 123  182
           
Sbjct: 274  226

Query: 183  225
           
Sbjct: 334  226

[Close]
BLAST of CU108784 vs. TrEMBL
Match: A0A022QEX1_ERYGU (Beta-galactosidase (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a026608mg PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-32
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           ++AQIENEYGN+M+  YGDAGKAY+NWCA MAESL+IGVPWIMCQQSDAPQPMINTCNGF
Sbjct: 162 IIAQIENEYGNIMS-TYGDAGKAYVNWCANMAESLDIGVPWIMCQQSDAPQPMINTCNGF 221

Query: 63  YCDNFTPNNPKRPK 122
           YCDNFTPNNP  PK
Sbjct: 222 YCDNFTPNNPNSPK 234

Query: 123  182
           
Sbjct: 282  234

Query: 183  225
           
Sbjct: 342  234

[Close]
BLAST of CU108784 vs. NCBI nr
Match: gi|700195199|gb|KGN50376.1| (hypothetical protein Csa_5G169120 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 5.5e-38
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF
Sbjct: 171 ILAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 230

Query: 63  YCDNFTPNNPKRPK 122
           YCDNFTPNNPK PK
Sbjct: 231 YCDNFTPNNPKSPK 244

Query: 123  182
           
Sbjct: 291  244

Query: 183  225
           
Sbjct: 351  244

[Close]
BLAST of CU108784 vs. NCBI nr
Match: gi|778665392|ref|XP_011648551.1| (PREDICTED: beta-galactosidase 15-like [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 5.5e-38
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF
Sbjct: 171 ILAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 230

Query: 63  YCDNFTPNNPKRPK 122
           YCDNFTPNNPK PK
Sbjct: 231 YCDNFTPNNPKSPK 244

Query: 123  182
           
Sbjct: 291  244

Query: 183  225
           
Sbjct: 351  244

[Close]
BLAST of CU108784 vs. NCBI nr
Match: gi|659074621|ref|XP_008437703.1| (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-37
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQP+INTCNGF
Sbjct: 171 ILAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPIINTCNGF 230

Query: 63  YCDNFTPNNPKRPK 122
           YCDNFTPNNPK PK
Sbjct: 231 YCDNFTPNNPKSPK 244

Query: 123  182
           
Sbjct: 291  244

Query: 183  225
           
Sbjct: 351  244

[Close]
BLAST of CU108784 vs. NCBI nr
Match: gi|659074629|ref|XP_008437707.1| (PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-37
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQP+INTCNGF
Sbjct: 127 ILAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPIINTCNGF 186

Query: 63  YCDNFTPNNPKRPK 122
           YCDNFTPNNPK PK
Sbjct: 187 YCDNFTPNNPKSPK 200

Query: 123  182
           
Sbjct: 247  200

Query: 183  225
           
Sbjct: 307  200

[Close]
BLAST of CU108784 vs. NCBI nr
Match: gi|659102456|ref|XP_008452141.1| (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-35
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 3 

Query: 3   VLAQIENEYGNVMTPAYGDAGKAYINWCAQMAESLNIGVPWIMCQQSDAPQPMINTCNGF 62
           +LAQIENEYGNVMTPAYGDAGKAYINWCAQM ESLNIGVPWIMCQQSDAPQP+INTCNGF
Sbjct: 171 ILAQIENEYGNVMTPAYGDAGKAYINWCAQMVESLNIGVPWIMCQQSDAPQPIINTCNGF 230

Query: 63  YCDNFTPNNPKRPK 122
           YCD+FTPNN K PK
Sbjct: 231 YCDDFTPNNLKSPK 244

Query: 123  182
           
Sbjct: 291  244

Query: 183  225
           
Sbjct: 351  244

The following BLAST results are available for this feature:
BLAST of CU108784 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BGA15_ARATH6.5e-3177.03Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1[more]
BGAL_BRAOL1.5e-2772.97Beta-galactosidase OS=Brassica oleracea PE=2 SV=1[more]
BGAL7_ARATH3.4e-2770.27Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2[more]
BGAL6_ORYSJ1.7e-2670.27Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2[more]
BGAL8_ARATH5.4e-2568.92Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2[more]
BLAST of CU108784 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M006_CUCSA8.6e-3897.30Beta-galactosidase OS=Cucumis sativus GN=Csa_1G650110 PE=3 SV=1[more]
A0A0A0KRM6_CUCSA8.6e-3897.30Beta-galactosidase OS=Cucumis sativus GN=Csa_5G169120 PE=3 SV=1[more]
A0A0A0LDH9_CUCSA7.5e-3489.19Beta-galactosidase OS=Cucumis sativus GN=Csa_3G550690 PE=3 SV=1[more]
A0A0A0LXX7_CUCSA2.2e-3389.19Beta-galactosidase OS=Cucumis sativus GN=Csa_1G643050 PE=3 SV=1[more]
A0A022QEX1_ERYGU1.9e-3285.14Beta-galactosidase (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a026608mg PE=3... [more]
BLAST of CU108784 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195199|gb|KGN50376.1|5.5e-3897.30hypothetical protein Csa_5G169120 [Cucumis sativus][more]
gi|778665392|ref|XP_011648551.1|5.5e-3897.30PREDICTED: beta-galactosidase 15-like [Cucumis sativus][more]
gi|659074621|ref|XP_008437703.1|1.6e-3795.95PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo][more]
gi|659074629|ref|XP_008437707.1|1.6e-3795.95PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo][more]
gi|659102456|ref|XP_008452141.1|2.6e-3591.89PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR001944Glycoside_Hdrlase_35
IPR013781Glycoside hydrolase, catalytic domain
IPR017853Glycoside_hydrolase_SF
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G650110Csa1G650110gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0007846G0007846EST
H0055478H0055478EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001944Glycoside hydrolase, family 35PANTHERPTHR23421BETA-GALACTOSIDASE RELATEDcoord: 2..75
score: 1.9
IPR013781Glycoside hydrolase, catalytic domainGENE3DG3DSA:3.20.20.80coord: 2..68
score: 3.4
IPR017853Glycoside hydrolase superfamilyunknownSSF51445(Trans)glycosidasescoord: 3..70
score: 6.72
NoneNo IPR availablePANTHERPTHR23421:SF80SUBFAMILY NOT NAMEDcoord: 2..75
score: 1.9