CU108563 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU108563
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	GRAS family transcription factor
Location	Chr1 : 497572 .. 497798 (-)
Sequence length	235

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCTGCGAGGGGATGGCAAGGGTTGAGAGGCACGAGAGAGTGGATCAATGGCGGAGGAGGATGAGCAGAGCAGGTTTTCAAGCTTCGCCCATTAAAGTAATGGCTCAGGCAAAGCAGTGGATTGGGAAGTTTAAAGCTAATGAAGGCTACACTATTGTGGAAGAAAAGGGGTGTTTGGTTCTTGGCTGGAAGTCCAAGCCCATTGTTGCAGCCTCCTGCTGGAAATGACTAAAAAC

Library


Library category	ESTs
gynoecious flower library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU108563 vs. Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.4e-14
Identity = 35/76 (46.05%), Postives = 43/76 (56.58%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPI--KVMAQAKQWIGKFKANEGYTIVEEKGCL 62
           C+G  RVERHE + QWR R   AGF A+ I      QA   +  F   EGY + E  GCL
Sbjct: 454 CDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDGCL 513

Query: 63  VLGWKSKPIVAASCWK 122
           +LGW ++P++A S WK
Sbjct: 514 MLGWHTRPLIATSAWK 529

Query: 123  182
           
Sbjct: 574  529

Query: 183  225
           
Sbjct: 634  529

[Close]

BLAST of CU108563 vs. Swiss-Prot
Match: SLR1_ORYSI (DELLA protein SLR1 OS=Oryza sativa subsp. indica GN=SLR1 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-13
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMA--QAKQWIGKFKANEGYTIVEEKGCL 62
           CEG  R ERHE + QWR R+ RAGF+   +   A  QA   +  F   +GY + E++GCL
Sbjct: 546 CEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCL 605

Query: 63  VLGWKSKPIVAASCWK 122
            LGW ++P++A S W+
Sbjct: 606 TLGWHTRPLIATSAWR 621

Query: 123  182
           
Sbjct: 666  621

Query: 183  225
           
Sbjct: 726  621

[Close]

BLAST of CU108563 vs. Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-13
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMA--QAKQWIGKFKANEGYTIVEEKGCL 62
           CEG  R ERHE + QWR R+ RAGF+   +   A  QA   +  F   +GY + E++GCL
Sbjct: 546 CEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCL 605

Query: 63  VLGWKSKPIVAASCWK 122
            LGW ++P++A S W+
Sbjct: 606 TLGWHTRPLIATSAWR 621

Query: 123  182
           
Sbjct: 666  621

Query: 183  225
           
Sbjct: 726  621

[Close]

BLAST of CU108563 vs. Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-13
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPI--KVMAQAKQWIGKFKANEGYTIVEEKGCL 62
           CEG  RVERHE ++QWR RM+ +GF    +      QA   +  F   +GY + E  GCL
Sbjct: 499 CEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCL 558

Query: 63  VLGWKSKPIVAASCWK 122
           +LGW ++P++A S WK
Sbjct: 559 MLGWHTRPLIATSAWK 574

Query: 123  182
           
Sbjct: 619  574

Query: 183  225
           
Sbjct: 679  574

[Close]

BLAST of CU108563 vs. Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.9e-13
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMA--QAKQWIGKFKANEGYTIVEEKGCL 62
           CEG  R ERHE + QWR R+  AGF+   +   A  QA   +  F   +GY + E++GCL
Sbjct: 544 CEGAERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCL 603

Query: 63  VLGWKSKPIVAASCWK 122
            LGW ++P++A S W+
Sbjct: 604 TLGWHTRPLIATSAWR 619

Query: 123  182
           
Sbjct: 664  619

Query: 183  225
           
Sbjct: 724  619

[Close]

BLAST of CU108563 vs. TrEMBL
Match: A0A0A0LU55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002800 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL
Sbjct: 399 CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 458

Query: 63  GWKSKPIVAASCWK 122
           GWKSKPIVAASCWK
Sbjct: 459 GWKSKPIVAASCWK 472

Query: 123  182
           
Sbjct: 519  472

Query: 183  225
           
Sbjct: 579  472

[Close]

BLAST of CU108563 vs. TrEMBL
Match: F6GSG2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g10300 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.3e-32
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEG ARVERHERVDQWRRRMSRAGFQA+PIK+MAQAKQW+GK KA EGY I+EEKGCLVL
Sbjct: 445 CEGPARVERHERVDQWRRRMSRAGFQAAPIKMMAQAKQWLGKVKACEGYNIMEEKGCLVL 504

Query: 63  GWKSKPIVAASCWK 122
           GWKSKPIVAASCWK
Sbjct: 505 GWKSKPIVAASCWK 518

Query: 123  182
           
Sbjct: 565  518

Query: 183  225
           
Sbjct: 625  518

[Close]

BLAST of CU108563 vs. TrEMBL
Match: A0A067K4B2_JATCU (GRAS32 protein OS=Jatropha curcas GN=GRAS32 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-31
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEG ARVERHERVDQWRRRMSRAGFQA+PIK++AQAKQW+GK K  +GYT+VEEKGCLVL
Sbjct: 438 CEGPARVERHERVDQWRRRMSRAGFQAAPIKMLAQAKQWLGKNKVCDGYTVVEEKGCLVL 497

Query: 63  GWKSKPIVAASCWK 122
           GWKSKPIVAASCWK
Sbjct: 498 GWKSKPIVAASCWK 511

Query: 123  182
           
Sbjct: 558  511

Query: 183  225
           
Sbjct: 618  511

[Close]

BLAST of CU108563 vs. TrEMBL
Match: B9RAM0_RICCO (DELLA protein RGL1, putative OS=Ricinus communis GN=RCOM_1507300 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.6e-31
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEG ARVERHE+VDQWRRRMSRAGFQA+P+K+MAQAKQW+GK K  +GYT+VEEKGCLVL
Sbjct: 452 CEGPARVERHEKVDQWRRRMSRAGFQAAPVKMMAQAKQWLGKNKVCDGYTVVEEKGCLVL 511

Query: 63  GWKSKPIVAASCWK 122
           GWKSKPIVAASCWK
Sbjct: 512 GWKSKPIVAASCWK 525

Query: 123  182
           
Sbjct: 572  525

Query: 183  225
           
Sbjct: 632  525

[Close]

BLAST of CU108563 vs. TrEMBL
Match: A0A059A5Q6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02752 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEG ARVERHERVDQWRRRM+RAGFQ +PIK+MAQAKQW+GK K  EGYT+VEEKGCLVL
Sbjct: 377 CEGPARVERHERVDQWRRRMTRAGFQLAPIKMMAQAKQWLGKNKVCEGYTVVEEKGCLVL 436

Query: 63  GWKSKPIVAASCWK 122
           GW SKPIVAASCWK
Sbjct: 437 GWNSKPIVAASCWK 450

Query: 123  182
           
Sbjct: 497  450

Query: 183  225
           
Sbjct: 557  450

[Close]

BLAST of CU108563 vs. NCBI nr
Match: gi|449440598|ref|XP_004138071.1| (PREDICTED: DELLA protein GAI-like [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL
Sbjct: 437 CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 496

Query: 63  GWKSKPIVAASCWK 122
           GWKSKPIVAASCWK
Sbjct: 497 GWKSKPIVAASCWK 510

Query: 123  182
           
Sbjct: 557  510

Query: 183  225
           
Sbjct: 617  510

[Close]

BLAST of CU108563 vs. NCBI nr
Match: gi|700208415|gb|KGN63511.1| (hypothetical protein Csa_1G002800 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL
Sbjct: 399 CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 458

Query: 63  GWKSKPIVAASCWK 122
           GWKSKPIVAASCWK
Sbjct: 459 GWKSKPIVAASCWK 472

Query: 123  182
           
Sbjct: 519  472

Query: 183  225
           
Sbjct: 579  472

[Close]

BLAST of CU108563 vs. NCBI nr
Match: gi|659129006|ref|XP_008464481.1| (PREDICTED: DELLA protein GAI-like [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 7.0e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL
Sbjct: 437 CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 496

Query: 63  GWKSKPIVAASCWK 122
           GWKSKPIVA+SCWK
Sbjct: 497 GWKSKPIVASSCWK 510

Query: 123  182
           
Sbjct: 557  510

Query: 183  225
           
Sbjct: 617  510

[Close]

BLAST of CU108563 vs. NCBI nr
Match: gi|297733612|emb|CBI14859.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-31
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEG ARVERHERVDQWRRRMSRAGFQA+PIK+MAQAKQW+GK KA EGY I+EEKGCLVL
Sbjct: 417 CEGPARVERHERVDQWRRRMSRAGFQAAPIKMMAQAKQWLGKVKACEGYNIMEEKGCLVL 476

Query: 63  GWKSKPIVAASCWK 122
           GWKSKPIVAASCWK
Sbjct: 477 GWKSKPIVAASCWK 490

Query: 123  182
           
Sbjct: 537  490

Query: 183  225
           
Sbjct: 597  490

[Close]

BLAST of CU108563 vs. NCBI nr
Match: gi|225457448|ref|XP_002263040.1| (PREDICTED: DELLA protein GAI [Vitis vinifera])

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-31
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 3


Query: 3   CEGMARVERHERVDQWRRRMSRAGFQASPIKVMAQAKQWIGKFKANEGYTIVEEKGCLVL 62
           CEG ARVERHERVDQWRRRMSRAGFQA+PIK+MAQAKQW+GK KA EGY I+EEKGCLVL
Sbjct: 445 CEGPARVERHERVDQWRRRMSRAGFQAAPIKMMAQAKQWLGKVKACEGYNIMEEKGCLVL 504

Query: 63  GWKSKPIVAASCWK 122
           GWKSKPIVAASCWK
Sbjct: 505 GWKSKPIVAASCWK 518

Query: 123  182
           
Sbjct: 565  518

Query: 183  225
           
Sbjct: 625  518

The following BLAST results are available for this feature:

BLAST of CU108563 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GAI_ARATH	3.4e-14	46.05	DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1	[more]
SLR1_ORYSI	1.7e-13	43.42	DELLA protein SLR1 OS=Oryza sativa subsp. indica GN=SLR1 PE=3 SV=2	[more]
SLR1_ORYSJ	1.7e-13	43.42	DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1	[more]
GAI_SOLLC	2.9e-13	43.42	DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1	[more]
RHT1_WHEAT	4.9e-13	42.11	DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1	[more]

BLAST of CU108563 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU55_CUCSA	2.2e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002800 PE=3 SV=1	[more]
F6GSG2_VITVI	7.3e-32	89.19	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g10300 PE=3 SV=...	[more]
A0A067K4B2_JATCU	2.8e-31	86.49	GRAS32 protein OS=Jatropha curcas GN=GRAS32 PE=2 SV=1	[more]
B9RAM0_RICCO	3.6e-31	85.14	DELLA protein RGL1, putative OS=Ricinus communis GN=RCOM_1507300 PE=3 SV=1	[more]
A0A059A5Q6_EUCGR	1.8e-30	85.14	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02752 PE=3 SV=1	[more]

BLAST of CU108563 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440598\|ref\|XP_004138071.1\|	3.2e-36	100.00	PREDICTED: DELLA protein GAI-like [Cucumis sativus]	[more]
gi\|700208415\|gb\|KGN63511.1\|	3.2e-36	100.00	hypothetical protein Csa_1G002800 [Cucumis sativus]	[more]
gi\|659129006\|ref\|XP_008464481.1\|	7.0e-36	98.65	PREDICTED: DELLA protein GAI-like [Cucumis melo]	[more]
gi\|297733612\|emb\|CBI14859.3\|	1.0e-31	89.19	unnamed protein product [Vitis vinifera]	[more]
gi\|225457448\|ref\|XP_002263040.1\|	1.0e-31	89.19	PREDICTED: DELLA protein GAI [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G002800	Csa1G002800	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0093024	G0093024	EST
H0024496	H0024496	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 2..75 score: 1.6
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 1..56 score: 10
None	No IPR available	PANTHER	PTHR31636	FAMILY NOT NAMED	coord: 2..75 score: 1.2
None	No IPR available	PANTHER	PTHR31636:SF24	SUBFAMILY NOT NAMED	coord: 2..75 score: 1.2