CU108212 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU108212
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	UPF0329 protein ECU01_0100/ECU01_1510/ECU08_0030, putative isoform 2
Location	Chr1 : 679063 .. 679893 (+)
Sequence length	570

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGGAACTCCAAATACAATCTTTGAGCAGATACAACAGGAAAGAGCACGAAGAGATGAAGCCATTGAGAAGTGGAAACAACTTTGTCACGCTATCAAGACTGAACTTGATGACCTAATTCAGAGGACACATAATGGAGATGGATTACATTGGGGAGTGACTGAAAGGACGGAAGCACTAAAAACACAATTACAAGCAAAGGAGGAGACCATAAAAGCCCTCAAAGAACAAGTAGTTTCAATGGAGCAAGAAAAATATAAGAGGAACAGAGAAATCGACATACTGAGGCAAAGCTTGAGAATCATGACCAGTAAGAAGGAACAGCAGATAGAAACTTTCCATAAATGCGTCTGTAAGTAACTTGCCAATGAAATAGGCATGAAAACAGAATTTTCAACACTACATTAGAATTAAGAAGAAATAATGAAATGCCAATTGAAGTGTTACTAGTTGTAAATGTGTCCAGGAAGGTTGTGTTACCTTTGCACACCCACCCTTCATTTCAACCCAAATGTTGTTATTCTTATTATCATTACGTTGGCATGGTCCTAAAGATCAACATTTTTGTTAC

Library


Library category	ESTs
fruit (8DPP) library	9
gynoecious flower library	14
hermaphrodite flower library	8

Homology

[Close]

BLAST of CU108212 vs. TrEMBL
Match: A0A0A0LS07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004180 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.8e-58
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 3


Query: 3   GTPNTIFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTERTEALK 62
           GTPNTIFEQIQQERARRDEAIEKWKQL HAIK ELDDLIQRTHNGDGLHWGVTERTEALK
Sbjct: 101 GTPNTIFEQIQQERARRDEAIEKWKQLYHAIKIELDDLIQRTHNGDGLHWGVTERTEALK 160

Query: 63  TQLQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHKCVCK 122
           TQLQAKEETIKALKEQVVSMEQ+KYKRNREIDILRQSLRIMTSKKEQQIETFHKCVCK
Sbjct: 161 TQLQAKEETIKALKEQVVSMEQDKYKRNREIDILRQSLRIMTSKKEQQIETFHKCVCK 218

Query: 123  182
           
Sbjct: 221  218

Query: 183  242
           
Sbjct: 281  218

Query: 243  302
           
Sbjct: 341  218

Query: 303  357
           
Sbjct: 401  218

[Close]

BLAST of CU108212 vs. TrEMBL
Match: C6SYJ9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 3


Query: 18  IFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTE---RTEALKTQ 77
           + EQ+++ERARRDEA+EKWKQL  AIKTELD+LIQRT++GDGL+W   E   + E LK +
Sbjct: 18  LVEQMKEERARRDEAVEKWKQLYLAIKTELDELIQRTYDGDGLYWKAEENGIQMENLKKE 77

Query: 78  LQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHK 137
           LQ KEETIKALK Q++SME+EKYK+ RE D+LRQSLRIM  KK   I+T  K
Sbjct: 78  LQEKEETIKALKTQLLSMEKEKYKKEREFDLLRQSLRIMNGKK-NSIQTKEK 128

Query: 138  197
           
Sbjct: 138  128

Query: 198  257
           
Sbjct: 198  128

Query: 258  317
           
Sbjct: 258  128

Query: 318  345
           
Sbjct: 318  128

[Close]

BLAST of CU108212 vs. TrEMBL
Match: A0A0B2R181_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048146 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 3


Query: 18  IFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTE---RTEALKTQ 77
           + EQ+++ERARRDEA+EKWKQL  AIKTELD+LIQRT++GDGL+W   E   + E LK +
Sbjct: 109 LVEQMKEERARRDEAVEKWKQLYLAIKTELDELIQRTYDGDGLYWKAEENGIQMENLKKE 168

Query: 78  LQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHK 137
           LQ KEETIKALK Q++SME+EKYK+ RE D+LRQSLRIM  KK   I+T  K
Sbjct: 169 LQEKEETIKALKTQLLSMEKEKYKKEREFDLLRQSLRIMNGKK-NSIQTKEK 219

Query: 138  197
           
Sbjct: 229  219

Query: 198  257
           
Sbjct: 289  219

Query: 258  317
           
Sbjct: 349  219

Query: 318  345
           
Sbjct: 409  219

[Close]

BLAST of CU108212 vs. TrEMBL
Match: I1LAN6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G130200 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 3


Query: 18  IFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTE---RTEALKTQ 77
           + EQ+++ERARRDEA+EKWKQL  AIKTELD+LIQRT++GDGL+W   E   + E LK +
Sbjct: 108 LVEQMKEERARRDEAVEKWKQLYLAIKTELDELIQRTYDGDGLYWKAEENGIQMENLKKE 167

Query: 78  LQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHK 137
           LQ KEETIKALK Q++SME+EKYK+ RE D+LRQSLRIM  KK   I+T  K
Sbjct: 168 LQEKEETIKALKTQLLSMEKEKYKKEREFDLLRQSLRIMNGKK-NSIQTKEK 218

Query: 138  197
           
Sbjct: 228  218

Query: 198  257
           
Sbjct: 288  218

Query: 258  317
           
Sbjct: 348  218

Query: 318  345
           
Sbjct: 408  218

[Close]

BLAST of CU108212 vs. TrEMBL
Match: A0A151U2S2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_006214 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-28
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 3


Query: 18  IFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTE---RTEALKTQ 77
           + EQ+++ERARRDEA+EKWKQL  AIKTELD+LIQRT++GDGL+W   E   + E L+ +
Sbjct: 108 LVEQMKEERARRDEAVEKWKQLYLAIKTELDELIQRTYDGDGLYWKAEENDIQMENLRRE 167

Query: 78  LQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHK 137
           LQ KEET KALK Q++SME+EKYK+ RE D+LRQSLRIM  KK   I+T  K
Sbjct: 168 LQEKEETTKALKTQLLSMEKEKYKKEREFDLLRQSLRIMNGKK-NSIQTREK 218

Query: 138  197
           
Sbjct: 228  218

Query: 198  257
           
Sbjct: 288  218

Query: 258  317
           
Sbjct: 348  218

Query: 318  345
           
Sbjct: 408  218

[Close]

BLAST of CU108212 vs. NCBI nr
Match: gi|449440646|ref|XP_004138095.1| (PREDICTED: uncharacterized protein LOC101204691 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-56
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 3


Query: 3   GTPNTIFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTERTEALK 62
           GTPNTIFEQIQQERARRDEAIEKWKQL HAIK ELDDLIQRTHNGDGLHWGVTERTEALK
Sbjct: 101 GTPNTIFEQIQQERARRDEAIEKWKQLYHAIKIELDDLIQRTHNGDGLHWGVTERTEALK 160

Query: 63  TQLQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHKCVCK 122
           TQLQAKEETIKALKEQVVSMEQ+KYKRNREIDILRQSLRIMTSKKEQQIETFHKCVCK
Sbjct: 161 TQLQAKEETIKALKEQVVSMEQDKYKRNREIDILRQSLRIMTSKKEQQIETFHKCVCK 218

Query: 123  182
           
Sbjct: 221  218

Query: 183  242
           
Sbjct: 281  218

Query: 243  302
           
Sbjct: 341  218

Query: 303  357
           
Sbjct: 401  218

[Close]

BLAST of CU108212 vs. NCBI nr
Match: gi|659129099|ref|XP_008464528.1| (PREDICTED: WD repeat-containing protein 65-like [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-54
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 3


Query: 3   GTPNTIFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTERTEALK 62
           GTPNTIFEQIQQERARRDEA+EKWKQL HAIK ELDDLIQRTHNGDGLHWG TERTEALK
Sbjct: 101 GTPNTIFEQIQQERARRDEAVEKWKQLYHAIKIELDDLIQRTHNGDGLHWGATERTEALK 160

Query: 63  TQLQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHKCVCK 122
           TQLQAKEETIK+LKEQVVSMEQ+KYKRNREIDILRQSLRIMTSKKEQQIET HKCVCK
Sbjct: 161 TQLQAKEETIKSLKEQVVSMEQDKYKRNREIDILRQSLRIMTSKKEQQIETSHKCVCK 218

Query: 123  182
           
Sbjct: 221  218

Query: 183  242
           
Sbjct: 281  218

Query: 243  302
           
Sbjct: 341  218

Query: 303  357
           
Sbjct: 401  218

[Close]

BLAST of CU108212 vs. NCBI nr
Match: gi|947084820|gb|KRH33541.1| (hypothetical protein GLYMA_10G130200 [Glycine max])

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 3


Query: 18  IFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTE---RTEALKTQ 77
           + EQ+++ERARRDEA+EKWKQL  AIKTELD+LIQRT++GDGL+W   E   + E LK +
Sbjct: 108 LVEQMKEERARRDEAVEKWKQLYLAIKTELDELIQRTYDGDGLYWKAEENGIQMENLKKE 167

Query: 78  LQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHK 137
           LQ KEETIKALK Q++SME+EKYK+ RE D+LRQSLRIM  KK   I+T  K
Sbjct: 168 LQEKEETIKALKTQLLSMEKEKYKKEREFDLLRQSLRIMNGKK-NSIQTKEK 218

Query: 138  197
           
Sbjct: 228  218

Query: 198  257
           
Sbjct: 288  218

Query: 258  317
           
Sbjct: 348  218

Query: 318  345
           
Sbjct: 408  218

[Close]

BLAST of CU108212 vs. NCBI nr
Match: gi|351723035|ref|NP_001235729.1| (uncharacterized protein LOC100306230 [Glycine max])

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 3


Query: 18  IFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTE---RTEALKTQ 77
           + EQ+++ERARRDEA+EKWKQL  AIKTELD+LIQRT++GDGL+W   E   + E LK +
Sbjct: 18  LVEQMKEERARRDEAVEKWKQLYLAIKTELDELIQRTYDGDGLYWKAEENGIQMENLKKE 77

Query: 78  LQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHK 137
           LQ KEETIKALK Q++SME+EKYK+ RE D+LRQSLRIM  KK   I+T  K
Sbjct: 78  LQEKEETIKALKTQLLSMEKEKYKKEREFDLLRQSLRIMNGKK-NSIQTKEK 128

Query: 138  197
           
Sbjct: 138  128

Query: 198  257
           
Sbjct: 198  128

Query: 258  317
           
Sbjct: 258  128

Query: 318  345
           
Sbjct: 318  128

[Close]

BLAST of CU108212 vs. NCBI nr
Match: gi|734392679|gb|KHN27711.1| (hypothetical protein glysoja_048146 [Glycine soja])

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 3


Query: 18  IFEQIQQERARRDEAIEKWKQLCHAIKTELDDLIQRTHNGDGLHWGVTE---RTEALKTQ 77
           + EQ+++ERARRDEA+EKWKQL  AIKTELD+LIQRT++GDGL+W   E   + E LK +
Sbjct: 109 LVEQMKEERARRDEAVEKWKQLYLAIKTELDELIQRTYDGDGLYWKAEENGIQMENLKKE 168

Query: 78  LQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTSKKEQQIETFHK 137
           LQ KEETIKALK Q++SME+EKYK+ RE D+LRQSLRIM  KK   I+T  K
Sbjct: 169 LQEKEETIKALKTQLLSMEKEKYKKEREFDLLRQSLRIMNGKK-NSIQTKEK 219

Query: 138  197
           
Sbjct: 229  219

Query: 198  257
           
Sbjct: 289  219

Query: 258  317
           
Sbjct: 349  219

Query: 318  345
           
Sbjct: 409  219

The following BLAST results are available for this feature:

BLAST of CU108212 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS07_CUCSA	3.8e-58	97.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004180 PE=4 SV=1	[more]
C6SYJ9_SOYBN	2.2e-29	64.29	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0B2R181_GLYSO	2.2e-29	64.29	Uncharacterized protein OS=Glycine soja GN=glysoja_048146 PE=4 SV=1	[more]
I1LAN6_SOYBN	2.2e-29	64.29	Uncharacterized protein OS=Glycine max GN=GLYMA_10G130200 PE=4 SV=1	[more]
A0A151U2S2_CAJCA	1.9e-28	62.50	Uncharacterized protein OS=Cajanus cajan GN=KK1_006214 PE=4 SV=1	[more]

BLAST of CU108212 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440646\|ref\|XP_004138095.1\|	1.8e-56	97.46	PREDICTED: uncharacterized protein LOC101204691 [Cucumis sativus]	[more]
gi\|659129099\|ref\|XP_008464528.1\|	1.3e-54	94.07	PREDICTED: WD repeat-containing protein 65-like [Cucumis melo]	[more]
gi\|947084820\|gb\|KRH33541.1\|	1.7e-27	64.29	hypothetical protein GLYMA_10G130200 [Glycine max]	[more]
gi\|351723035\|ref\|NP_001235729.1\|	1.7e-27	64.29	uncharacterized protein LOC100306230 [Glycine max]	[more]
gi\|734392679\|gb\|KHN27711.1\|	1.7e-27	64.29	hypothetical protein glysoja_048146 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G004180	Csa1G004180	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02L3PFQ	FKNP3UI02L3PFQ	EST
FKNP3UI02L53I1	FKNP3UI02L53I1	EST
FKNP3UI02LFED4	FKNP3UI02LFED4	EST
FKNP3UI02LH8UK	FKNP3UI02LH8UK	EST
FKNP3UI02M11ZN	FKNP3UI02M11ZN	EST
FKNP3UI02M8KL8	FKNP3UI02M8KL8	EST
FKNP3UI02MBXB5	FKNP3UI02MBXB5	EST
FKNP3UI02N0UJ7	FKNP3UI02N0UJ7	EST
FKNP3UI02NP02W	FKNP3UI02NP02W	EST
G0006179	G0006179	EST
G0008498	G0008498	EST
G0012899	G0012899	EST
G0024787	G0024787	EST
G0027167	G0027167	EST
G0027676	G0027676	EST
G0043643	G0043643	EST
G0052303	G0052303	EST
G0056087	G0056087	EST
G0080844	G0080844	EST
G0144644	G0144644	EST
G0158532	G0158532	EST
G0176872	G0176872	EST
G0191045	G0191045	EST
H0017618	H0017618	EST
H0043141	H0043141	EST
H0067485	H0067485	EST
H0077489	H0077489	EST
H0084846	H0084846	EST
H0131948	H0131948	EST
H0147439	H0147439	EST
H0178063	H0178063	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 22..42 score: -coord: 57..84 scor
None	No IPR available	PANTHER	PTHR37226	FAMILY NOT NAMED	coord: 7..107 score: 8.6
None	No IPR available	PANTHER	PTHR37226:SF1	GENOMIC DNA, CHROMOSOME 3, BAC CLONE:F14O13	coord: 7..107 score: 8.6