CU108139 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU108139
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	UPF0329 protein ECU01_0100/ECU01_1510/ECU08_0030, putative isoform 2
Location	Chr1 : 678484 .. 679070 (+)
Sequence length	597

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGAGGTCAAATCTGTCTGTATTTTCTTGTATAAAATGACAGCCATTCACGAGCCTCATAGACGTTTCCACTAATCATTAACTCTGAGAGAGAGCTAGTCAAATAGAGCAAGGGATAAGCACAGCCAATATAGGTACCCCAAATGCAGCTCTTTTATGGAGGAGCTTTTGTTCAGAGTTCACATCAAACACATCTCTCTTTCTTATTTCCTGTCTATAAGACCTTCTTGAAAAAAACTCACTCAGTAACCCAGAAAGGCTAAAGAAGCAAAGCCCTTCAGTAAAATGGGTGTATGCTCAAGCAAAGATGGGAGTGAGATTTTTTTATGATGATGTTAAAGGATTGAAAGAAAAGATAAGGCTACTTAGAGAGGAAGTGAGGGGAGTAATCTGCGAAATGGATAAAGAGACTAAAGCACATGAGAAAGACATGGTGGTTTTTGCATTTAAGGAGGCAGGTTGGAAAACAGAGAAAAAGAGACTCAAAGAGGAGGTGAAGATGTTGAGGAAGAAGGTAAAAGAGAGTTTTACAGAGATTGAAGAAGGAAATTTTGGAGAGAAGATTGCAACAGAATGGGAAATGGAGGGAACT

Library


Library category	ESTs
fruit (8DPP) library	31
gynoecious flower library	4

Homology

[Close]

BLAST of CU108139 vs. TrEMBL
Match: A0A0A0LS07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004180 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.5e-44
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 1


Query: 307 AKMGVRFFYDDVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKR 366
           +K G   FYDDVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKR
Sbjct: 6   SKDGSEIFYDDVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKR 65

Query: 367 LKEEVKMLRKKVKESFTEIEEGNFGEKIATEWEMEGT 426
           LKEEVKMLRKKVKESFTEIEEGNFGEKIATEWEMEGT
Sbjct: 66  LKEEVKMLRKKVKESFTEIEEGNFGEKIATEWEMEGT 102

Query: 427  486
           
Sbjct: 126  102

Query: 487  546
           
Sbjct: 186  102

Query: 547  598
           
Sbjct: 246  102

[Close]

BLAST of CU108139 vs. TrEMBL
Match: A0A0A0LS07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004180 PE=4 SV=1)

HSP 1 Score: 30.8 bits (68), Expect = 2.3e+03
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 3


Query: 291 MGVCSSKDGSEIF 330
           MGVCSSKDGSEIF
Sbjct: 1   MGVCSSKDGSEIF 13

HSP 2 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 337 DVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKRLKEEVKMLRK 396
           D++GL EK+RLL+ E++ ++CE +KE +A+E+DM+VFAFKE  WK E+K+LKEEVK L+K
Sbjct: 18  DLRGLAEKVRLLQGEIKAILCEREKENRAYERDMMVFAFKEGEWKQERKKLKEEVKRLKK 77

Query: 397 KVKES---FTEIEEGNF-GEKIATEW 456
            ++E       +E+G+F GEK    W
Sbjct: 78  MLEEKEEMIRGMEDGSFVGEKDEKNW 103

Query: 457  516
           
Sbjct: 138  103

Query: 517  576
           
Sbjct: 198  103

Query: 577  583
           
Sbjct: 258  103

[Close]

BLAST of CU108139 vs. TrEMBL
Match: A0A067KB52_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12911 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-15
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 1


Query: 337 DVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKRLKEEVKMLRK 396
           D +GL EK+RLL++E++ ++CE +KE++A+E+D++VFAFKEA WK EKK+LKEEVK LRK
Sbjct: 35  DFRGLLEKVRLLQDEMKAIMCEREKESRAYERDVMVFAFKEAEWKQEKKKLKEEVKRLRK 94

Query: 397 KVKESFTEIE--------EGNFGEKIATEWEMEG 456
            V+E   +I+         G  GEK +  W + G
Sbjct: 95  IVEEKEEKIKGMEDGLLLVGEKGEK-SHNWLLSG 127

Query: 457  516
           
Sbjct: 155  127

Query: 517  576
           
Sbjct: 215  127

Query: 577  595
           
Sbjct: 275  127

[Close]

BLAST of CU108139 vs. TrEMBL
Match: A0A0B2P7Y4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_046900 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-15
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 340 VKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKRLKEEVKMLRKK 399
           V  LKEK+RLL+EE++ ++ E +KET+++E+D++VF FKEA WK E KRL+EEVK LR  
Sbjct: 19  VMNLKEKVRLLQEEIKEMMYEREKETRSYERDIMVFTFKEADWKQEGKRLREEVKQLRSL 78

Query: 400 VK---ESFTEIEEGNFGEKIATEWEMEGT 459
           V+   E   EIE G   +    EWE+ GT
Sbjct: 79  VEEKDEKIREIEVGMMEKSSEKEWELMGT 107

Query: 460  519
           
Sbjct: 139  107

Query: 520  579
           
Sbjct: 199  107

Query: 580  598
           
Sbjct: 259  107

[Close]

BLAST of CU108139 vs. TrEMBL
Match: I1NEK7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G081000 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-15
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 340 VKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKRLKEEVKMLRKK 399
           V  LKEK+RLL+EE++ ++ E +KET+++E+D++VF FKEA WK E KRL+EEVK LR  
Sbjct: 19  VMNLKEKVRLLQEEIKEMMYEREKETRSYERDIMVFTFKEADWKQEGKRLREEVKQLRSL 78

Query: 400 VK---ESFTEIEEGNFGEKIATEWEMEGT 459
           V+   E   EIE G   +    EWE+ GT
Sbjct: 79  VEEKDEKIREIEVGMMEKSSEKEWELMGT 107

Query: 460  519
           
Sbjct: 139  107

Query: 520  579
           
Sbjct: 199  107

Query: 580  598
           
Sbjct: 259  107

[Close]

BLAST of CU108139 vs. NCBI nr
Match: gi|449440646|ref|XP_004138095.1| (PREDICTED: uncharacterized protein LOC101204691 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 3.4e-42
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 1


Query: 307 AKMGVRFFYDDVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKR 366
           +K G   FYDDVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKR
Sbjct: 6   SKDGSEIFYDDVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKR 65

Query: 367 LKEEVKMLRKKVKESFTEIEEGNFGEKIATEWEMEGT 426
           LKEEVKMLRKKVKESFTEIEEGNFGEKIATEWEMEGT
Sbjct: 66  LKEEVKMLRKKVKESFTEIEEGNFGEKIATEWEMEGT 102

Query: 427  486
           
Sbjct: 126  102

Query: 487  546
           
Sbjct: 186  102

Query: 547  598
           
Sbjct: 246  102

[Close]

BLAST of CU108139 vs. NCBI nr
Match: gi|659129099|ref|XP_008464528.1| (PREDICTED: WD repeat-containing protein 65-like [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 5.5e-40
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 1


Query: 307 AKMGVRFFYDDVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKR 366
           +K G   FYDDVKGLKEKIRLLREEVRGVI EMDKETKAHEKDMVVFAFKEA WKTEKKR
Sbjct: 6   SKDGSEIFYDDVKGLKEKIRLLREEVRGVITEMDKETKAHEKDMVVFAFKEASWKTEKKR 65

Query: 367 LKEEVKMLRKKVKESFTEIEEGNFGEKIATEWEMEGT 426
           L+EEVKMLRKKVKESFTEIEEGNFGEKIATEWEMEGT
Sbjct: 66  LREEVKMLRKKVKESFTEIEEGNFGEKIATEWEMEGT 102

Query: 427  486
           
Sbjct: 126  102

Query: 487  546
           
Sbjct: 186  102

Query: 547  598
           
Sbjct: 246  102

[Close]

BLAST of CU108139 vs. NCBI nr
Match: gi|1000968166|ref|XP_015574053.1| (PREDICTED: E3 ubiquitin-protein ligase BRE1A isoform X2 [Ricinus communis])

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 337 DVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKRLKEEVKMLRK 396
           D++GL EK+RLL+ E++ ++CE +KE +A+E+DM+VFAFKE  WK E+K+LKEEVK L+K
Sbjct: 18  DLRGLAEKVRLLQGEIKAILCEREKENRAYERDMMVFAFKEGEWKQERKKLKEEVKRLKK 77

Query: 397 KVKES---FTEIEEGNF-GEKIATEW 456
            ++E       +E+G+F GEK    W
Sbjct: 78  MLEEKEEMIRGMEDGSFVGEKDEKNW 103

Query: 457  516
           
Sbjct: 138  103

Query: 517  576
           
Sbjct: 198  103

Query: 577  583
           
Sbjct: 258  103

[Close]

BLAST of CU108139 vs. NCBI nr
Match: gi|255554306|ref|XP_002518193.1| (PREDICTED: E3 ubiquitin-protein ligase BRE1A isoform X1 [Ricinus communis])

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 337 DVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKRLKEEVKMLRK 396
           D++GL EK+RLL+ E++ ++CE +KE +A+E+DM+VFAFKE  WK E+K+LKEEVK L+K
Sbjct: 18  DLRGLAEKVRLLQGEIKAILCEREKENRAYERDMMVFAFKEGEWKQERKKLKEEVKRLKK 77

Query: 397 KVKES---FTEIEEGNF-GEKIATEW 456
            ++E       +E+G+F GEK    W
Sbjct: 78  MLEEKEEMIRGMEDGSFVGEKDEKNW 103

Query: 457  516
           
Sbjct: 138  103

Query: 517  576
           
Sbjct: 198  103

Query: 577  583
           
Sbjct: 258  103

[Close]

BLAST of CU108139 vs. NCBI nr
Match: gi|645234971|ref|XP_008224058.1| (PREDICTED: testis-expressed sequence 9 protein-like [Prunus mume])

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1


Query: 337 DVKGLKEKIRLLREEVRGVICEMDKETKAHEKDMVVFAFKEAGWKTEKKRLKEEVKMLRK 396
           DV GL+EK+R ++EE+ G++CE  KE+ A+E+DM+VFAFKEA WK EKK+++EEVKMLRK
Sbjct: 17  DVGGLREKVRNIQEEMSGMVCERKKESAAYERDMMVFAFKEAEWKQEKKKMREEVKMLRK 76

Query: 397 KVKESFTEI----------EEGNFGEKIATEWEM 456
            V E    I          E GN       EWE+
Sbjct: 77  MVDEKEKRIRGIEDAGVVLEAGNNKSGGKKEWEV 110

Query: 457  516
           
Sbjct: 137  110

Query: 517  576
           
Sbjct: 197  110

Query: 577  589
           
Sbjct: 257  110

The following BLAST results are available for this feature:

BLAST of CU108139 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS07_CUCSA	2.5e-44	94.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004180 PE=4 SV=1	[more]
A0A0A0LS07_CUCSA	2.3e+03	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004180 PE=4 SV=1	[more]
A0A067KB52_JATCU	5.5e-15	48.94	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12911 PE=4 SV=1	[more]
A0A0B2P7Y4_GLYSO	5.5e-15	50.56	Uncharacterized protein OS=Glycine soja GN=glysoja_046900 PE=4 SV=1	[more]
I1NEK7_SOYBN	5.5e-15	50.56	Uncharacterized protein OS=Glycine max GN=GLYMA_20G081000 PE=4 SV=1	[more]

BLAST of CU108139 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440646\|ref\|XP_004138095.1\|	3.4e-42	94.85	PREDICTED: uncharacterized protein LOC101204691 [Cucumis sativus]	[more]
gi\|659129099\|ref\|XP_008464528.1\|	5.5e-40	91.75	PREDICTED: WD repeat-containing protein 65-like [Cucumis melo]	[more]
gi\|1000968166\|ref\|XP_015574053.1\|	1.5e-13	50.00	PREDICTED: E3 ubiquitin-protein ligase BRE1A isoform X2 [Ricinus communis]	[more]
gi\|255554306\|ref\|XP_002518193.1\|	1.5e-13	50.00	PREDICTED: E3 ubiquitin-protein ligase BRE1A isoform X1 [Ricinus communis]	[more]
gi\|645234971\|ref\|XP_008224058.1\|	4.4e-13	50.00	PREDICTED: testis-expressed sequence 9 protein-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G004180	Csa1G004180	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KGU9D	FKNP3UI02KGU9D	EST
FKNP3UI02KM52P	FKNP3UI02KM52P	EST
FKNP3UI02KT4LB	FKNP3UI02KT4LB	EST
FKNP3UI02KV40G	FKNP3UI02KV40G	EST
FKNP3UI02L4897	FKNP3UI02L4897	EST
FKNP3UI02L52EI	FKNP3UI02L52EI	EST
FKNP3UI02L8FBH	FKNP3UI02L8FBH	EST
FKNP3UI02LT3D7	FKNP3UI02LT3D7	EST
FKNP3UI02M4DW0	FKNP3UI02M4DW0	EST
FKNP3UI02M6M61	FKNP3UI02M6M61	EST
FKNP3UI02MDMCX	FKNP3UI02MDMCX	EST
FKNP3UI02MNZ5T	FKNP3UI02MNZ5T	EST
FKNP3UI02MPGLF	FKNP3UI02MPGLF	EST
FKNP3UI02MVI8R	FKNP3UI02MVI8R	EST
FKNP3UI02MXJJ3	FKNP3UI02MXJJ3	EST
FKNP3UI02MY1I7	FKNP3UI02MY1I7	EST
FKNP3UI02N2D2J	FKNP3UI02N2D2J	EST
FKNP3UI02N7ON0	FKNP3UI02N7ON0	EST
FKNP3UI02NHFV1	FKNP3UI02NHFV1	EST
FKNP3UI02NLMR1	FKNP3UI02NLMR1	EST
FKNP3UI02NM7SA	FKNP3UI02NM7SA	EST
FKNP3UI02NN9YT	FKNP3UI02NN9YT	EST
FKNP3UI02O0ZOD	FKNP3UI02O0ZOD	EST
FKNP3UI02O16NZ	FKNP3UI02O16NZ	EST
FKNP3UI02O2SY1	FKNP3UI02O2SY1	EST
FKNP3UI02OAF0O	FKNP3UI02OAF0O	EST
FKNP3UI02OG78B	FKNP3UI02OG78B	EST
FKNP3UI02OINX3	FKNP3UI02OINX3	EST
FKNP3UI02OML0F	FKNP3UI02OML0F	EST
FKNP3UI02ORWW5	FKNP3UI02ORWW5	EST
FKNP3UI02OVFK7	FKNP3UI02OVFK7	EST
G0030258	G0030258	EST
G0086003	G0086003	EST
G0090091	G0090091	EST
G0188144	G0188144	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 10..30 score: -coord: 49..76 scor
None	No IPR available	PANTHER	PTHR37226	FAMILY NOT NAMED	coord: 10..95 score: 2.4