CU107705 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU107705
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Gb:AAD10662.1, putative isoform 6
Location	Chr4 : 20024743 .. 20027100 (-)
Sequence length	725

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCTGCTTTGAGGGGAGAGATTGAAACTGTGAAGCAGGAATTACATCGTGCTAGAGTTGCAATTGAGTATGAAAAGAAGGGATATGCGGAGAATTATGAACACGGTCAGGTTATGGAGAAGAAACTGGTTTTCAATGGCAAGGGGAATTGGAGAAACTTAGAGCTGAGGTTGCTAATGCAGAGAAGAGAGCTCATGCTTCTGCTGCTGTTGGTGGAAATGCTGCTGCTGGGTATGGAGCAAATTATGGCAATGCTGATGCTGGATACGGGGGAAATCCATATTCTACCAATTATGGCTTGAACTCCGTGCAGTCTGGTACTGAAGGTTATCCTCCGTATGGACCTGGATCTGTTCCCTGGGGTGCGTATGACATACAACGGGCTCAAGGACATAGATAGAATGATGCATGATATCCTGCTAAGATGTTTCTTGCAGAGGGATTGAGGTTCAAATCACAAAGCATTGATAATTAGGTCTTGGATCTGATGTGTTGTTTTGTGATAAACATTTTAGGAGGTTTGCTTATTAACAGTTTTCAAGTTGTACTTCTGTTAGACAATTAGCTTGGCCCATTGATGCAGTATTCTTACTTTTTTTTTTCAAATTATATATTTTCCCTGTATATGCCTCTCTACACATTTCAGATGTGATATTTATTTTCATTTTGGGTTTGGTTTTCTGGTACATTCCAGAAGGTTACACATAGTTTTTTGAATTGCAAATCC

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	6
hermaphrodite flower library	9

Homology

[Close]

BLAST of CU107705 vs. Swiss-Prot
Match: FLXL1_ARATH (Protein FLX-like 1 OS=Arabidopsis thaliana GN=FLXL1 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-11
Identity = 32/43 (74.42%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 1   PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 60
           P L  EIE  KQEL RAR AI+YEKKGYAENYEHG++ME KLV
Sbjct: 190 PTLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEHKLV 232

Query: 61   120
           
Sbjct: 250  232

Query: 121  130
           
Sbjct: 310  232

[Close]

BLAST of CU107705 vs. TrEMBL
Match: A0A0A0L4I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622850 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.6e-19
Identity = 53/84 (63.10%), Postives = 53/84 (63.10%), Query Frame = 3


Query: 144 ELEKLRAEVANAEKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTNYGLNSVQSGTE 203
           ELEKLRAEVANAEKR                               STNYGLNSVQSGTE
Sbjct: 230 ELEKLRAEVANAEKRAHASAAVGGNAAAGYGANYGNADAGYGGNPYSTNYGLNSVQSGTE 289

Query: 204 GYPPYGPGSVPWGAYDIQRAQGHR 263
           GYPPYGPGSVPWGAYDIQRAQGHR
Sbjct: 290 GYPPYGPGSVPWGAYDIQRAQGHR 313

Query: 264  323
           
Sbjct: 350  313

Query: 324  383
           
Sbjct: 410  313

Query: 384  396
           
Sbjct: 470  313

[Close]

BLAST of CU107705 vs. TrEMBL
Match: A0A0A0L4I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622850 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1


Query: 1   PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 60
           PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV
Sbjct: 183 PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 225

Query: 61   120
           
Sbjct: 243  225

Query: 121  130
           
Sbjct: 303  225

HSP 2 Score: 79.0 bits (193), Expect = 9.0e-12
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1


Query: 1   PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 60
           PAL+ EIE VKQEL RAR AIEYEKKGYAENYEHGQVMEKKL+
Sbjct: 186 PALKAEIENVKQELQRARAAIEYEKKGYAENYEHGQVMEKKLI 228

Query: 61   120
           
Sbjct: 246  228

Query: 121  130
           
Sbjct: 306  228

[Close]

BLAST of CU107705 vs. TrEMBL
Match: A0A061FGF3_THECC (Gb:AAD10662.1, putative isoform 5 OS=Theobroma cacao GN=TCM_032144 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 39/84 (46.43%), Postives = 44/84 (52.38%), Query Frame = 3


Query: 144 ELEKLRAEVANAEKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTNYGLNSVQSGTE 203
           ELEKLRAE+ANAEKR                                 NYG+N VQ G +
Sbjct: 233 ELEKLRAEIANAEKRTRAAGGSNPVAGYNANYGNPEAGYTGNTYP--VNYGMNPVQGGVD 292

Query: 204 GYPPYGPGSVPWGAYDIQRAQGHR 263
           GYP YGP +  WGAYD+QRAQGHR
Sbjct: 293 GYPQYGPAAGSWGAYDMQRAQGHR 314

Query: 264  323
           
Sbjct: 353  314

Query: 324  383
           
Sbjct: 413  314

Query: 384  396
           
Sbjct: 473  314

HSP 2 Score: 79.0 bits (193), Expect = 9.0e-12
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1


Query: 1   PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 60
           PAL+ EIE VKQEL RAR AIEYEKKGYAENYEHGQVMEKKL+
Sbjct: 146 PALKAEIENVKQELQRARAAIEYEKKGYAENYEHGQVMEKKLI 188

Query: 61   120
           
Sbjct: 206  188

Query: 121  130
           
Sbjct: 266  188

[Close]

BLAST of CU107705 vs. TrEMBL
Match: A0A061F9Z1_THECC (Gb:AAD10662.1, putative isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_032144 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 39/84 (46.43%), Postives = 44/84 (52.38%), Query Frame = 3


Query: 144 ELEKLRAEVANAEKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTNYGLNSVQSGTE 203
           ELEKLRAE+ANAEKR                                 NYG+N VQ G +
Sbjct: 193 ELEKLRAEIANAEKRTRAAGGSNPAVAGYNANYGNPEAGYTGNTYP-VNYGMNPVQGGVD 252

Query: 204 GYPPYGPGSVPWGAYDIQRAQGHR 263
           GYP YGP +  WGAYD+QRAQGHR
Sbjct: 253 GYPQYGPAAGSWGAYDMQRAQGHR 275

Query: 264  323
           
Sbjct: 313  275

Query: 324  383
           
Sbjct: 373  275

Query: 384  396
           
Sbjct: 433  275

HSP 2 Score: 79.0 bits (193), Expect = 9.0e-12
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1


Query: 1   PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 60
           PAL+ EIE VKQEL RAR AIEYEKKGYAENYEHGQVMEKKL+
Sbjct: 186 PALKAEIENVKQELQRARAAIEYEKKGYAENYEHGQVMEKKLI 228

Query: 61   120
           
Sbjct: 246  228

Query: 121  130
           
Sbjct: 306  228

[Close]

BLAST of CU107705 vs. TrEMBL
Match: A0A061F9H0_THECC (Gb:AAD10662.1, putative isoform 1 OS=Theobroma cacao GN=TCM_032144 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 39/84 (46.43%), Postives = 44/84 (52.38%), Query Frame = 3


Query: 144 ELEKLRAEVANAEKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTNYGLNSVQSGTE 203
           ELEKLRAE+ANAEKR                                 NYG+N VQ G +
Sbjct: 233 ELEKLRAEIANAEKRTRAAGGSNPAVAGYNANYGNPEAGYTGNTYP-VNYGMNPVQGGVD 292

Query: 204 GYPPYGPGSVPWGAYDIQRAQGHR 263
           GYP YGP +  WGAYD+QRAQGHR
Sbjct: 293 GYPQYGPAAGSWGAYDMQRAQGHR 315

Query: 264  323
           
Sbjct: 353  315

Query: 324  383
           
Sbjct: 413  315

Query: 384  396
           
Sbjct: 473  315

HSP 2 Score: 79.0 bits (193), Expect = 9.0e-12
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1


Query: 1   PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 60
           PAL+ EIE VKQEL RAR AIEYEKKGYAENYEHGQVMEKKL+
Sbjct: 186 PALKAEIENVKQELQRARAAIEYEKKGYAENYEHGQVMEKKLI 228

Query: 61   120
           
Sbjct: 246  228

Query: 121  130
           
Sbjct: 306  228

[Close]

BLAST of CU107705 vs. NCBI nr
Match: gi|449456555|ref|XP_004146014.1| (PREDICTED: protein FLX-like 1 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 8.4e-19
Identity = 53/84 (63.10%), Postives = 53/84 (63.10%), Query Frame = 3


Query: 144 ELEKLRAEVANAEKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTNYGLNSVQSGTE 203
           ELEKLRAEVANAEKR                               STNYGLNSVQSGTE
Sbjct: 230 ELEKLRAEVANAEKRAHASAAVGGNAAAGYGANYGNADAGYGGNPYSTNYGLNSVQSGTE 289

Query: 204 GYPPYGPGSVPWGAYDIQRAQGHR 263
           GYPPYGPGSVPWGAYDIQRAQGHR
Sbjct: 290 GYPPYGPGSVPWGAYDIQRAQGHR 313

Query: 264  323
           
Sbjct: 350  313

Query: 324  383
           
Sbjct: 410  313

Query: 384  396
           
Sbjct: 470  313

[Close]

BLAST of CU107705 vs. NCBI nr
Match: gi|659127602|ref|XP_008463788.1| (PREDICTED: protein FLX-like 1 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 8.4e-19
Identity = 53/84 (63.10%), Postives = 53/84 (63.10%), Query Frame = 3


Query: 144 ELEKLRAEVANAEKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTNYGLNSVQSGTE 203
           ELEKLRAEVANAEKR                               STNYGLNSVQSGTE
Sbjct: 230 ELEKLRAEVANAEKRAHASAAVGGNAAAGYGANYGNADAGYGGNPYSTNYGLNSVQSGTE 289

Query: 204 GYPPYGPGSVPWGAYDIQRAQGHR 263
           GYPPYGPGSVPWGAYDIQRAQGHR
Sbjct: 290 GYPPYGPGSVPWGAYDIQRAQGHR 313

Query: 264  323
           
Sbjct: 350  313

Query: 324  383
           
Sbjct: 410  313

Query: 384  396
           
Sbjct: 470  313

[Close]

BLAST of CU107705 vs. NCBI nr
Match: gi|1009154127|ref|XP_015895000.1| (PREDICTED: protein FLX-like 1 [Ziziphus jujuba])

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1


Query: 1   PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 60
           PA+R EIET+KQEL RAR AIEYEKKGYAENYEHGQVMEKKL+
Sbjct: 184 PAIRAEIETMKQELQRARAAIEYEKKGYAENYEHGQVMEKKLI 226

Query: 61   120
           
Sbjct: 244  226

Query: 121  130
           
Sbjct: 304  226

[Close]

BLAST of CU107705 vs. NCBI nr
Match: gi|1009162127|ref|XP_015899269.1| (PREDICTED: protein FLX-like 1 [Ziziphus jujuba])

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1


Query: 1   PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 60
           PA+R EIET+KQEL RAR AIEYEKKGYAENYEHGQVMEKKL+
Sbjct: 184 PAIRAEIETMKQELQRARAAIEYEKKGYAENYEHGQVMEKKLI 226

Query: 61   120
           
Sbjct: 244  226

Query: 121  130
           
Sbjct: 304  226

[Close]

BLAST of CU107705 vs. NCBI nr
Match: gi|590611132|ref|XP_007022015.1| (Gb:AAD10662.1, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 77.4 bits (189), Expect = 3.8e-11
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1


Query: 1   PALRGEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLV 60
           PAL+ EIE VKQEL RAR AIEYEKKGYAENYEHGQVMEKKL+
Sbjct: 186 PALKAEIENVKQELQRARAAIEYEKKGYAENYEHGQVMEKKLI 228

Query: 61   120
           
Sbjct: 246  228

Query: 121  130
           
Sbjct: 306  228

The following BLAST results are available for this feature:

BLAST of CU107705 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FLXL1_ARATH	4.9e-11	74.42	Protein FLX-like 1 OS=Arabidopsis thaliana GN=FLXL1 PE=1 SV=1	[more]

BLAST of CU107705 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4I7_CUCSA	7.6e-19	63.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622850 PE=4 SV=1	[more]
A0A0A0L4I7_CUCSA	6.7e-15	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622850 PE=4 SV=1	[more]
A0A061FGF3_THECC	5.0e-10	46.43	Gb:AAD10662.1, putative isoform 5 OS=Theobroma cacao GN=TCM_032144 PE=4 SV=1	[more]
A0A061F9Z1_THECC	5.0e-10	46.43	Gb:AAD10662.1, putative isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_032144 PE...	[more]
A0A061F9H0_THECC	5.0e-10	46.43	Gb:AAD10662.1, putative isoform 1 OS=Theobroma cacao GN=TCM_032144 PE=4 SV=1	[more]

BLAST of CU107705 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456555\|ref\|XP_004146014.1\|	8.4e-19	63.10	PREDICTED: protein FLX-like 1 [Cucumis sativus]	[more]
gi\|659127602\|ref\|XP_008463788.1\|	8.4e-19	63.10	PREDICTED: protein FLX-like 1 [Cucumis melo]	[more]
gi\|1009154127\|ref\|XP_015895000.1\|	1.7e-11	86.05	PREDICTED: protein FLX-like 1 [Ziziphus jujuba]	[more]
gi\|1009162127\|ref\|XP_015899269.1\|	1.7e-11	86.05	PREDICTED: protein FLX-like 1 [Ziziphus jujuba]	[more]
gi\|590611132\|ref\|XP_007022015.1\|	3.8e-11	86.05	Gb:AAD10662.1, putative isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G622850	Csa4G622850	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02O1KLM	FKNP3UI02O1KLM	EST
G0082492	G0082492	EST
G0134087	G0134087	EST
G0153310	G0153310	EST
G0174266	G0174266	EST
G0184106	G0184106	EST
G0187825	G0187825	EST
H0023619	H0023619	EST
H0033190	H0033190	EST
H0069134	H0069134	EST
H0080752	H0080752	EST
H0117097	H0117097	EST
H0128420	H0128420	EST
H0147301	H0147301	EST
H0166370	H0166370	EST
H0189766	H0189766	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 49..70 score: -coord: 43..47 scor
None	No IPR available	PANTHER	PTHR33405	FAMILY NOT NAMED	coord: 1..132 score: 1.9
None	No IPR available	PANTHER	PTHR33405:SF6	PROTEIN FLX-LIKE 1	coord: 1..132 score: 1.9