CU107577 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU107577
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Embryo sac development arrest 6, putative
Location	Chr6 : 6028593 .. 6029033 (+)
Sequence length	445

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGGGGTAGTAGTAGTAGTAGGTTTAGGTTAAGAAGAGAGAAGAAGATTTGAAGGATGATGAATAGTAATACCACCAAAACGATGCGTTTACCTCCTCGTAGATTAATGACGTCACCTAGGCCCAACAACAAGAGGAAAGAAAGAGAGGGCCTTGATTATGATGATGATGATGATGAGGCCCACCAACTGCCATTGACGGCTAAAGTACCCAAGCCGACGCCGACGCCGCATTCCAAGCAGCTCCTTGCCGGCTACTTGGCTCACGAGTTCCTCACTAAAGGAACGCTCTTCGGTCAGACTTGGGATAATCCAGATCCGGCTGCTAATGCTAACGCTAACGCTATGGCTTCTTCCTCTTCTTCCTTTTCTTCCTTTTCTTCTTCTCCTCCACTCACTACAGAGCCTCAAGAGAAGCGCCAAGCCGAAGCCCAATTACACCACAAC

Library


Library category	ESTs
gynoecious flower library	17
hermaphrodite flower library	11

Homology

[Close]

BLAST of CU107577 vs. TrEMBL
Match: A0A0A0KDC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088100 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.4e-49
Identity = 100/129 (77.52%), Postives = 100/129 (77.52%), Query Frame = 2


Query: 56  MMNSNTTKTMRLPPRRLMTSPRPNNKRKEREGLXXXXXXXEAHQLPLTAKVPKPTPTPHS 115
           MMNSNTTKTMRLPPRRLMTSPRPNNKRKEREGL       EAHQLPLTAKVPKPTPTPHS
Sbjct: 1   MMNSNTTKTMRLPPRRLMTSPRPNNKRKEREGLDYDDDDDEAHQLPLTAKVPKPTPTPHS 60

Query: 116 KQLLAGYLAHEFLTKGTLFGQTWDNPDPXXXXXXXXXXXXXXXXXXXXXXPPLTTEPQEK 175
           KQLLAGYLAHEFLTKGTLFGQTWDNPDP                      PPLTTEPQEK
Sbjct: 61  KQLLAGYLAHEFLTKGTLFGQTWDNPDPAANANANAMASSSSSFSSFSSSPPLTTEPQEK 120

Query: 176 RQAEAQLHH 235
           RQAEAQLHH
Sbjct: 121 RQAEAQLHH 129

Query: 236  295
           
Sbjct: 181  129

Query: 296  355
           
Sbjct: 241  129

Query: 356  415
           
Sbjct: 301  129

Query: 416  443
           
Sbjct: 361  129

[Close]

BLAST of CU107577 vs. TrEMBL
Match: A0A0D2N9W4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G255300 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.8e-14
Identity = 49/84 (58.33%), Postives = 53/84 (63.10%), Query Frame = 2


Query: 74  TKTMRLPPRRLMTSPRPNNKRKEREGLXXXXXXXEAHQLPLTAKVPKPTPTPH--SKQLL 133
           TKTMRLPPRR+  S  PNNKRKER+G            LP ++K P PT  P   S  LL
Sbjct: 3   TKTMRLPPRRVPDS-MPNNKRKERDGFDLKPQT----SLPPSSKPPMPTAPPPLLSNHLL 62

Query: 134 AGYLAHEFLTKGTLFGQTWDNPDP 193
           AGYLAHEFLT GTLFGQ WD   P
Sbjct: 63  AGYLAHEFLTNGTLFGQPWDPTRP 81

Query: 194  253
           
Sbjct: 123  81

Query: 254  313
           
Sbjct: 183  81

Query: 314  320
           
Sbjct: 243  81

[Close]

BLAST of CU107577 vs. TrEMBL
Match: I1LYN1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G125500 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 46/85 (54.12%), Postives = 52/85 (61.18%), Query Frame = 2


Query: 74  TKTMRLPPRRLMTSPRPNNKRKEREGLXXXXXXXEAHQLPLTAKVPKPTPTPHSK----- 133
           TKTMRLPPRR++T   P+NKRKER+          A  +    K  KP P P S+     
Sbjct: 3   TKTMRLPPRRVLTPSGPSNKRKERDEPFDRPKSIPAPPINKLPKPDKPIPWPISEPKPSN 62

Query: 134 QLLAGYLAHEFLTKGTLFGQTWDNP 193
           QLLAGYLAHEFLTKGTL GQ W  P
Sbjct: 63  QLLAGYLAHEFLTKGTLLGQPWAPP 87

Query: 194  253
           
Sbjct: 123  87

Query: 254  313
           
Sbjct: 183  87

[Close]

BLAST of CU107577 vs. TrEMBL
Match: A0A067JRB3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17654 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 50/88 (56.82%), Postives = 53/88 (60.23%), Query Frame = 2


Query: 74  TKTMRLPPRRLMTSPRPNNKRKEREGLXXXXXXXEAHQLPLTAKVPKPT----------- 133
           TKTMRLPPRR +TS    NKRKEREG             P T K+PKPT           
Sbjct: 3   TKTMRLPPRRFLTS----NKRKEREGFDSLKPSPPPPPAPPT-KLPKPTINRLDSGILPE 62

Query: 134 PTPHSKQLLAGYLAHEFLTKGTLFGQTW 193
           P P S QLLAGYLAHE+LTKGTLFGQ W
Sbjct: 63  PAP-SNQLLAGYLAHEYLTKGTLFGQPW 84

Query: 194  253
           
Sbjct: 123  84

Query: 254  305
           
Sbjct: 183  84

[Close]

BLAST of CU107577 vs. TrEMBL
Match: I1L8G4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G039100 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.3e-12
Identity = 46/89 (51.69%), Postives = 51/89 (57.30%), Query Frame = 2


Query: 74  TKTMRLPPRRLMTSPRPNNKRKEREGLXXXXXXXEAHQLPLTAKVPKPT---------PT 133
           TKTMRLPPRR++T    +NKRKER+          A   P   K+PKP            
Sbjct: 3   TKTMRLPPRRVLTPTGTSNKRKERDETFDRPKPIPA---PPLNKLPKPDRPISLPLTEAK 62

Query: 134 PHSKQLLAGYLAHEFLTKGTLFGQTWDNP 193
           P S QLLAGYLAHEFLTKGTL GQ W  P
Sbjct: 63  PSSNQLLAGYLAHEFLTKGTLLGQPWAPP 88

Query: 194  253
           
Sbjct: 123  88

Query: 254  313
           
Sbjct: 183  88

[Close]

BLAST of CU107577 vs. NCBI nr
Match: gi|778711659|ref|XP_011656778.1| (PREDICTED: uncharacterized protein LOC105435768 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-47
Identity = 100/129 (77.52%), Postives = 100/129 (77.52%), Query Frame = 2


Query: 56  MMNSNTTKTMRLPPRRLMTSPRPNNKRKEREGLXXXXXXXEAHQLPLTAKVPKPTPTPHS 115
           MMNSNTTKTMRLPPRRLMTSPRPNNKRKEREGL       EAHQLPLTAKVPKPTPTPHS
Sbjct: 1   MMNSNTTKTMRLPPRRLMTSPRPNNKRKEREGLDYDDDDDEAHQLPLTAKVPKPTPTPHS 60

Query: 116 KQLLAGYLAHEFLTKGTLFGQTWDNPDPXXXXXXXXXXXXXXXXXXXXXXPPLTTEPQEK 175
           KQLLAGYLAHEFLTKGTLFGQTWDNPDP                      PPLTTEPQEK
Sbjct: 61  KQLLAGYLAHEFLTKGTLFGQTWDNPDPAANANANAMASSSSSFSSFSSSPPLTTEPQEK 120

Query: 176 RQAEAQLHH 235
           RQAEAQLHH
Sbjct: 121 RQAEAQLHH 129

Query: 236  295
           
Sbjct: 181  129

Query: 296  355
           
Sbjct: 241  129

Query: 356  415
           
Sbjct: 301  129

Query: 416  443
           
Sbjct: 361  129

[Close]

BLAST of CU107577 vs. NCBI nr
Match: gi|659119983|ref|XP_008459949.1| (PREDICTED: uncharacterized protein LOC103498915 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 87/139 (62.59%), Postives = 91/139 (65.47%), Query Frame = 2


Query: 56  MMNSNTTKTMRLPPRRLMTSPRP-----NNKRKEREGLXXXXXXXE---AHQLPLTAKVP 115
           MMNSNTTKTMRLPPRRLMTSPRP     NNKRKEREGL       +   AHQL  TAKVP
Sbjct: 1   MMNSNTTKTMRLPPRRLMTSPRPNNNNNNNKRKEREGLDDDDHHDDDEAAHQLSFTAKVP 60

Query: 116 KPTPTPHSKQLLAGYLAHEFLTKGTLFGQTWD-NPDPXXXXXXXXXXXXXXXXXXXXXXP 175
            P   PHSKQLLAGYLAHEFLTKGTLFGQTWD NPDP                       
Sbjct: 61  TP---PHSKQLLAGYLAHEFLTKGTLFGQTWDNNPDPAAANAIAMPSSSSCYYYYSL--- 120

Query: 176 PLTTEPQEKRQAEAQLHHN 235
             TTE QEKRQA+A+LHH+
Sbjct: 121 -TTTEAQEKRQAQAELHHH 132

Query: 236  295
           
Sbjct: 181  132

Query: 296  355
           
Sbjct: 241  132

Query: 356  415
           
Sbjct: 301  132

Query: 416  446
           
Sbjct: 361  132

[Close]

BLAST of CU107577 vs. NCBI nr
Match: gi|823128491|ref|XP_012443021.1| (PREDICTED: uncharacterized protein LOC105767949 [Gossypium raimondii])

HSP 1 Score: 82.4 bits (202), Expect = 7.2e-13
Identity = 49/84 (58.33%), Postives = 53/84 (63.10%), Query Frame = 2


Query: 74  TKTMRLPPRRLMTSPRPNNKRKEREGLXXXXXXXEAHQLPLTAKVPKPTPTPH--SKQLL 133
           TKTMRLPPRR+  S  PNNKRKER+G            LP ++K P PT  P   S  LL
Sbjct: 3   TKTMRLPPRRVPDS-MPNNKRKERDGFDLKPQT----SLPPSSKPPMPTAPPPLLSNHLL 62

Query: 134 AGYLAHEFLTKGTLFGQTWDNPDP 193
           AGYLAHEFLT GTLFGQ WD   P
Sbjct: 63  AGYLAHEFLTNGTLFGQPWDPTRP 81

Query: 194  253
           
Sbjct: 123  81

Query: 254  313
           
Sbjct: 183  81

Query: 314  320
           
Sbjct: 243  81

[Close]

BLAST of CU107577 vs. NCBI nr
Match: gi|1009147303|ref|XP_015891340.1| (PREDICTED: uncharacterized protein LOC107425815 [Ziziphus jujuba])

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 47/82 (57.32%), Postives = 53/82 (64.63%), Query Frame = 2


Query: 74  TKTMRLPPRRLMTSPRPNNKRKEREGLXXXXXXXEAHQ----LPLTAKVPKPTPTPHSKQ 133
           TKTMRLPPRR++T     NKRKE EG+       +  +    LP + K P P P   S Q
Sbjct: 3   TKTMRLPPRRILTP----NKRKESEGVVNALSTTKKQKPDSPLPDSNKEPDPAP---SNQ 62

Query: 134 LLAGYLAHEFLTKGTLFGQTWD 193
           LLAGYLAHEFLTKGTLFGQ WD
Sbjct: 63  LLAGYLAHEFLTKGTLFGQPWD 77

Query: 194  253
           
Sbjct: 123  77

Query: 254  308
           
Sbjct: 183  77

[Close]

BLAST of CU107577 vs. NCBI nr
Match: gi|356548081|ref|XP_003542432.1| (PREDICTED: uncharacterized protein LOC100791482 [Glycine max])

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 46/85 (54.12%), Postives = 52/85 (61.18%), Query Frame = 2


Query: 74  TKTMRLPPRRLMTSPRPNNKRKEREGLXXXXXXXEAHQLPLTAKVPKPTPTPHSK----- 133
           TKTMRLPPRR++T   P+NKRKER+          A  +    K  KP P P S+     
Sbjct: 3   TKTMRLPPRRVLTPSGPSNKRKERDEPFDRPKSIPAPPINKLPKPDKPIPWPISEPKPSN 62

Query: 134 QLLAGYLAHEFLTKGTLFGQTWDNP 193
           QLLAGYLAHEFLTKGTL GQ W  P
Sbjct: 63  QLLAGYLAHEFLTKGTLLGQPWAPP 87

Query: 194  253
           
Sbjct: 123  87

Query: 254  313
           
Sbjct: 183  87

The following BLAST results are available for this feature:

BLAST of CU107577 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDC0_CUCSA	4.4e-49	77.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088100 PE=4 SV=1	[more]
A0A0D2N9W4_GOSRA	7.8e-14	58.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G255300 PE=4 SV=1	[more]
I1LYN1_SOYBN	3.8e-13	54.12	Uncharacterized protein OS=Glycine max GN=GLYMA_13G125500 PE=4 SV=1	[more]
A0A067JRB3_JATCU	1.1e-12	56.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17654 PE=4 SV=1	[more]
I1L8G4_SOYBN	7.3e-12	51.69	Uncharacterized protein OS=Glycine max GN=GLYMA_10G039100 PE=4 SV=1	[more]

BLAST of CU107577 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711659\|ref\|XP_011656778.1\|	1.5e-47	77.52	PREDICTED: uncharacterized protein LOC105435768 [Cucumis sativus]	[more]
gi\|659119983\|ref\|XP_008459949.1\|	1.2e-31	62.59	PREDICTED: uncharacterized protein LOC103498915 [Cucumis melo]	[more]
gi\|823128491\|ref\|XP_012443021.1\|	7.2e-13	58.33	PREDICTED: uncharacterized protein LOC105767949 [Gossypium raimondii]	[more]
gi\|1009147303\|ref\|XP_015891340.1\|	4.7e-12	57.32	PREDICTED: uncharacterized protein LOC107425815 [Ziziphus jujuba]	[more]
gi\|356548081\|ref\|XP_003542432.1\|	4.7e-12	54.12	PREDICTED: uncharacterized protein LOC100791482 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G088100	Csa6G088100	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0000250	G0000250	EST
G0002634	G0002634	EST
G0019710	G0019710	EST
G0037772	G0037772	EST
G0046644	G0046644	EST
G0056321	G0056321	EST
G0056333	G0056333	EST
G0068865	G0068865	EST
G0093456	G0093456	EST
G0127321	G0127321	EST
G0137482	G0137482	EST
G0162065	G0162065	EST
G0164647	G0164647	EST
G0193772	G0193772	EST
G0198360	G0198360	EST
G0198387	G0198387	EST
G0205950	G0205950	EST
H0051089	H0051089	EST
H0067902	H0067902	EST
H0074968	H0074968	EST
H0075342	H0075342	EST
H0075600	H0075600	EST
H0113254	H0113254	EST
H0115343	H0115343	EST
H0120109	H0120109	EST
H0141663	H0141663	EST
H0151019	H0151019	EST
H0170157	H0170157	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34657	FAMILY NOT NAMED	coord: 1..77 score: 8.7
None	No IPR available	PANTHER	PTHR34657:SF2	F21M11.6 PROTEIN-RELATED	coord: 1..77 score: 8.7