CU107341 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU107341
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	30S ribosomal protein S9
Location	Chr3 : 14422442 .. 14423193 (+)
Sequence length	753

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GACCTCTCTTATTGTAACAACTTACAGTTCGATCACAAACCCTAACGATGGCGGCTCCAATCGAGTCTGTACAATGCTTCGGCCGGAAGAAGACGGCAGTTGCTGTAACATACTGCAAGCGTGGCCGAGGCTTGATCAAGATCAACGGCTGCCCAATTGAGCTCGTCGAACCTGAGATCTTACGCTTCAAGGCCTACGAACCCATCCTCCTTCTCGGCCGACACCGCTTCTCCGGCGTTGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCTATCCGACAGAGCATCGCTAAGGCTCTCGTCGCCTTTTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATAAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCTGATCCTAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCATATCGTTGATCGAAGTGTTTTAGGCGTCCATGGCCCAGAGTCGCTTGTTGGTATTATTTATTTTTTGCTTTTCTGTTCCAATTACCTTCCATTTCAATTTTTTTATCCGTTTATGATTGTAGTATAAGATTTTTTGACCCGAGGCTTGAATTTCTGATTGCTGAGATCATTGCAATCGTAATGCCATTTTGGAACATCAAAGTTTTCTTCCATTTGTTAAGGATTCTGAATTTTCCTTCATGTGACATTATTATAACTACAGCAATGGGGTCTATTCCAT

Library


Library category	ESTs
fruit (8DPP) library	10
gynoecious flower library	14
hermaphrodite flower library	4

Homology

[Close]

BLAST of CU107341 vs. Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.5e-71
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 3


Query: 60  IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGV 119
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 120 DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 179
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRR
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRR 125

Query: 180 CEPKKFGGRGARARFQKSYR 239
           CEPKKFGGRGARARFQKSYR
Sbjct: 126 CEPKKFGGRGARARFQKSYR 145

Query: 240  299
           
Sbjct: 186  145

Query: 300  359
           
Sbjct: 246  145

Query: 360  419
           
Sbjct: 306  145

Query: 420  479
           
Sbjct: 366  145

[Close]

BLAST of CU107341 vs. Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.7e-68
Identity = 128/145 (88.28%), Postives = 137/145 (94.48%), Query Frame = 3


Query: 48  MAAPI-ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 107
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 108 RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 167
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 168 ADPRRCEPKKFGGRGARARFQKSYR 227
           ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

Query: 228  287
           
Sbjct: 181  145

Query: 288  347
           
Sbjct: 241  145

Query: 348  407
           
Sbjct: 301  145

Query: 408  467
           
Sbjct: 361  145

Query: 468  480
           
Sbjct: 421  145

[Close]

BLAST of CU107341 vs. Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.5e-68
Identity = 124/139 (89.21%), Postives = 133/139 (95.68%), Query Frame = 3


Query: 63  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 122
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 123 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 182
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 183 EPKKFGGRGARARFQKSYR 242
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

Query: 243  302
           
Sbjct: 188  146

Query: 303  362
           
Sbjct: 248  146

Query: 363  422
           
Sbjct: 308  146

Query: 423  480
           
Sbjct: 368  146

[Close]

BLAST of CU107341 vs. Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.6e-68
Identity = 123/139 (88.49%), Postives = 133/139 (95.68%), Query Frame = 3


Query: 63  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 122
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 123 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 182
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 183 EPKKFGGRGARARFQKSYR 242
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

Query: 243  302
           
Sbjct: 188  146

Query: 303  362
           
Sbjct: 248  146

Query: 363  422
           
Sbjct: 308  146

Query: 423  480
           
Sbjct: 368  146

[Close]

BLAST of CU107341 vs. Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.1e-65
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 3


Query: 54  APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 113
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 114 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 173
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 174 RRCEPKKFGGRGARARFQKSYR 233
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

Query: 234  293
           
Sbjct: 182  142

Query: 294  353
           
Sbjct: 242  142

Query: 354  413
           
Sbjct: 302  142

Query: 414  473
           
Sbjct: 362  142

Query: 474  480
           
Sbjct: 422  142

[Close]

BLAST of CU107341 vs. TrEMBL
Match: A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.1e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 3


Query: 48  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 107
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 108 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 167
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 168 DPRRCEPKKFGGRGARARFQKSYR 227
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

Query: 228  287
           
Sbjct: 181  144

Query: 288  347
           
Sbjct: 241  144

Query: 348  407
           
Sbjct: 301  144

Query: 408  467
           
Sbjct: 361  144

Query: 468  480
           
Sbjct: 421  144

[Close]

BLAST of CU107341 vs. TrEMBL
Match: I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 3


Query: 51  AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 110
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 111 SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 170
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 171 PRRCEPKKFGGRGARARFQKSYR 230
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

Query: 231  290
           
Sbjct: 185  147

Query: 291  350
           
Sbjct: 245  147

Query: 351  410
           
Sbjct: 305  147

Query: 411  470
           
Sbjct: 365  147

Query: 471  480
           
Sbjct: 425  147

[Close]

BLAST of CU107341 vs. TrEMBL
Match: A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 3


Query: 51  AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 110
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 111 SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 170
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 171 PRRCEPKKFGGRGARARFQKSYR 230
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

Query: 231  290
           
Sbjct: 183  145

Query: 291  350
           
Sbjct: 243  145

Query: 351  410
           
Sbjct: 303  145

Query: 411  470
           
Sbjct: 363  145

Query: 471  480
           
Sbjct: 423  145

[Close]

BLAST of CU107341 vs. TrEMBL
Match: I3NMP7_HEVBR (40S ribosomal protein S16B OS=Hevea brasiliensis GN=RPS16B PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.9e-74
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 3


Query: 42  LTMAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR 101
           +  +APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR
Sbjct: 1   MAASAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR 60

Query: 102 HRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 161
           HRF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKD+LVRYDRTLL
Sbjct: 61  HRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDVLVRYDRTLL 120

Query: 162 VADPRRCEPKKFGGRGARARFQKSYR 221
           VADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 VADPRRCEPKKFGGRGARARFQKSYR 146

Query: 222  281
           
Sbjct: 181  146

Query: 282  341
           
Sbjct: 241  146

Query: 342  401
           
Sbjct: 301  146

Query: 402  461
           
Sbjct: 361  146

Query: 462  480
           
Sbjct: 421  146

[Close]

BLAST of CU107341 vs. TrEMBL
Match: A5ASC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02990 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.9e-74
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 3


Query: 48  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 107
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 108 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 167
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 168 DPRRCEPKKFGGRGARARFQKSYR 227
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

Query: 228  287
           
Sbjct: 181  144

Query: 288  347
           
Sbjct: 241  144

Query: 348  407
           
Sbjct: 301  144

Query: 408  467
           
Sbjct: 361  144

Query: 468  480
           
Sbjct: 421  144

[Close]

BLAST of CU107341 vs. NCBI nr
Match: gi|449438394|ref|XP_004136973.1| (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 1.3e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 3


Query: 48  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 107
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 108 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 167
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 168 DPRRCEPKKFGGRGARARFQKSYR 227
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

Query: 228  287
           
Sbjct: 181  144

Query: 288  347
           
Sbjct: 241  144

Query: 348  407
           
Sbjct: 301  144

Query: 408  467
           
Sbjct: 361  144

Query: 468  480
           
Sbjct: 421  144

[Close]

BLAST of CU107341 vs. NCBI nr
Match: gi|802563143|ref|XP_012066736.1| (PREDICTED: 40S ribosomal protein S16 [Jatropha curcas])

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 3


Query: 51  AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 110
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 111 SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 170
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 171 PRRCEPKKFGGRGARARFQKSYR 230
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

Query: 231  290
           
Sbjct: 183  145

Query: 291  350
           
Sbjct: 243  145

Query: 351  410
           
Sbjct: 303  145

Query: 411  470
           
Sbjct: 363  145

Query: 471  480
           
Sbjct: 423  145

[Close]

BLAST of CU107341 vs. NCBI nr
Match: gi|313586545|gb|ADR71283.1| (40S ribosomal protein S16A [Hevea brasiliensis])

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 3


Query: 51  AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 110
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 111 SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 170
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 171 PRRCEPKKFGGRGARARFQKSYR 230
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

Query: 231  290
           
Sbjct: 185  147

Query: 291  350
           
Sbjct: 245  147

Query: 351  410
           
Sbjct: 305  147

Query: 411  470
           
Sbjct: 365  147

Query: 471  480
           
Sbjct: 425  147

[Close]

BLAST of CU107341 vs. NCBI nr
Match: gi|225432586|ref|XP_002281350.1| (PREDICTED: 40S ribosomal protein S16 [Vitis vinifera])

HSP 1 Score: 287.3 bits (734), Expect = 2.5e-74
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 3


Query: 48  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 107
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 108 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 167
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 168 DPRRCEPKKFGGRGARARFQKSYR 227
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

Query: 228  287
           
Sbjct: 181  144

Query: 288  347
           
Sbjct: 241  144

Query: 348  407
           
Sbjct: 301  144

Query: 408  467
           
Sbjct: 361  144

Query: 468  480
           
Sbjct: 421  144

[Close]

BLAST of CU107341 vs. NCBI nr
Match: gi|590657854|ref|XP_007034683.1| (Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao])

HSP 1 Score: 287.3 bits (734), Expect = 2.5e-74
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 3


Query: 48  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 107
           MAAP+ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 108 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 167
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 168 DPRRCEPKKFGGRGARARFQKSYR 227
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

Query: 228  287
           
Sbjct: 181  144

Query: 288  347
           
Sbjct: 241  144

Query: 348  407
           
Sbjct: 301  144

Query: 408  467
           
Sbjct: 361  144

Query: 468  480
           
Sbjct: 421  144

The following BLAST results are available for this feature:

BLAST of CU107341 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS16_GOSHI	1.5e-71	96.43	40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1	[more]
RS16_FRIAG	2.7e-68	88.28	40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1	[more]
RS161_ARATH	3.5e-68	89.21	40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1	[more]
RS163_ARATH	4.6e-68	88.49	40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1	[more]
RS16_TORRU	2.1e-65	85.92	40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1	[more]

BLAST of CU107341 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6F6_CUCSA	2.1e-75	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1	[more]
I3NMP6_HEVBR	1.7e-74	99.30	40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1	[more]
A0A067L229_JATCU	1.7e-74	99.30	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1	[more]
I3NMP7_HEVBR	3.9e-74	95.89	40S ribosomal protein S16B OS=Hevea brasiliensis GN=RPS16B PE=2 SV=1	[more]
A5ASC2_VITVI	3.9e-74	97.92	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02990 PE=3 SV=...	[more]

BLAST of CU107341 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438394\|ref\|XP_004136973.1\|	1.3e-75	100.00	PREDICTED: 40S ribosomal protein S16 [Cucumis sativus]	[more]
gi\|802563143\|ref\|XP_012066736.1\|	1.1e-74	99.30	PREDICTED: 40S ribosomal protein S16 [Jatropha curcas]	[more]
gi\|313586545\|gb\|ADR71283.1\|	1.1e-74	99.30	40S ribosomal protein S16A [Hevea brasiliensis]	[more]
gi\|225432586\|ref\|XP_002281350.1\|	2.5e-74	97.92	PREDICTED: 40S ribosomal protein S16 [Vitis vinifera]	[more]
gi\|590657854\|ref\|XP_007034683.1\|	2.5e-74	97.22	Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000754	Ribosomal_S9
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR020568	Ribosomal_S5_D2-typ_fold
IPR020574	Ribosomal_S9_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G215620	Csa3G215620	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K2D9G	FKNP3UI02K2D9G	EST
FKNP3UI02K7UEF	FKNP3UI02K7UEF	EST
FKNP3UI02LFKKT	FKNP3UI02LFKKT	EST
FKNP3UI02LJCCX	FKNP3UI02LJCCX	EST
FKNP3UI02LMCRL	FKNP3UI02LMCRL	EST
FKNP3UI02NL9BJ	FKNP3UI02NL9BJ	EST
FKNP3UI02O19OW	FKNP3UI02O19OW	EST
FKNP3UI02O3OI8	FKNP3UI02O3OI8	EST
FKNP3UI02OE73P	FKNP3UI02OE73P	EST
FKNP3UI02OYOHB	FKNP3UI02OYOHB	EST
G0009469	G0009469	EST
G0026091	G0026091	EST
G0045593	G0045593	EST
G0078814	G0078814	EST
G0112214	G0112214	EST
G0145284	G0145284	EST
G0154661	G0154661	EST
G0155938	G0155938	EST
G0167452	G0167452	EST
G0172551	G0172551	EST
G0180599	G0180599	EST
G0200598	G0200598	EST
G0201596	G0201596	EST
G0206849	G0206849	EST
H0049295	H0049295	EST
H0068514	H0068514	EST
H0163804	H0163804	EST
H0177691	H0177691	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 1..144 score: 2.8E
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 12..144 score: 1.8
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 7..144 score: 2.0
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 7..144 score: 1.25
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 72..90 scor
None	No IPR available	PANTHER	PTHR21569:SF6	SUBFAMILY NOT NAMED	coord: 1..144 score: 2.8E