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The following sequences are available for this feature:
transcribed_cluster sequence TCTGTACTGTGTTGGGTTCATCTCATAAAGCTGATTCTAAAACTTGTCTTCACAGCTTTGTATGTGAAATAATTCTGTATTTGCATTTTCACATCATCAAAACTATCCTCATACTGCCCTGCAAATTCATTGACAACAACAAGCCTCCGATTCCTTCGTTGGTTCCTCTTACTCTGACGGCCACCACCGGCCGAGAGCTGCCACTCGTCACCAAGATTGACAAACGAACTTCTCAAGTCCACCGATTTAGACACGGTCAAATAACTCTTAGCCTTGGATTTCCTTTGCAAAACCAAATCCCCACCACTTCTAAGACTCATATTGGTAACCGGCGACGAGTCGAAAGACAAACACGGCGGCAGGGGAGTCGACCACAGGTGCACCAACAACAAACAAAGCTCCCACCATTTTGGAAAAAAGATTCCAAGATCACAAGCCAACCGTTGAGAGAAGGAGGATATATGAAGTGGGAATAAAGGAATTGAAAGAGAAAGAAGTGAATATAAAAG
BLAST of CU106866 vs. TrEMBL
Match: A0A0A0KX19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291920 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 3.1e-43 Identity = 93/106 (87.74%), Postives = 93/106 (87.74%), Query Frame = -1
Query: 45 LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLSAGG 104
LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLSAGG
Sbjct: 16 LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLSAGG 75
Query: 105 GRQSKXXXXXXXXXXXXXEFAGQYEDSFDDVKMQIQNYFTYKAVKT 164
GRQSK EFAGQYEDSFDDVKMQIQNYFTYKAVKT
Sbjct: 76 GRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVKT 121
Query: 165 224
Sbjct: 136 121
Query: 225 284
Sbjct: 196 121
Query: 285 344
Sbjct: 256 121
Query: 345 363
Sbjct: 316 121
BLAST of CU106866 vs. NCBI nr
Match: gi|449448719|ref|XP_004142113.1| (PREDICTED: uncharacterized protein LOC101203881 [Cucumis sativus]) HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42 Identity = 93/106 (87.74%), Postives = 93/106 (87.74%), Query Frame = -1
Query: 45 LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLSAGG 104
LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLSAGG
Sbjct: 16 LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLSAGG 75
Query: 105 GRQSKXXXXXXXXXXXXXEFAGQYEDSFDDVKMQIQNYFTYKAVKT 164
GRQSK EFAGQYEDSFDDVKMQIQNYFTYKAVKT
Sbjct: 76 GRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVKT 121
Query: 165 224
Sbjct: 136 121
Query: 225 284
Sbjct: 196 121
Query: 285 344
Sbjct: 256 121
Query: 345 363
Sbjct: 316 121
BLAST of CU106866 vs. NCBI nr
Match: gi|659097603|ref|XP_008449714.1| (PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo]) HSP 1 Score: 168.7 bits (426), Expect = 8.7e-39 Identity = 86/105 (81.90%), Postives = 87/105 (82.86%), Query Frame = -1
Query: 45 PPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLSAGGG 104
PPC SFDSSPVTNMSLRSGGDLVLQRKSK KSY TVSKSVDLRSSFVN GDEWQLSAGG
Sbjct: 17 PPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRSSFVNFGDEWQLSAGGC 76
Query: 105 RQSKXXXXXXXXXXXXXEFAGQYEDSFDDVKMQIQNYFTYKAVKT 164
RQS+ EFAGQYEDSFDDVKMQIQNYFTYKAVKT
Sbjct: 77 RQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVKT 121
Query: 165 224
Sbjct: 137 121
Query: 225 284
Sbjct: 197 121
Query: 285 344
Sbjct: 257 121
Query: 345 360
Sbjct: 317 121
BLAST of CU106866 vs. NCBI nr
Match: gi|224106179|ref|XP_002314074.1| (hypothetical protein POPTR_0009s05790g [Populus trichocarpa]) HSP 1 Score: 94.0 bits (232), Expect = 2.7e-16 Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = -1
Query: 45 PCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLS----A 104
PCL D+ P TN+ L+S GDLVLQR S + LT S++L SSFV+ +W+LS +
Sbjct: 14 PCLCLDALPTTNIGLKSSGDLVLQRSSMKRKQLTRPGSLELGSSFVDSWHDWRLSSKAIS 73
Query: 105 GGGRQSKXXXXXXXXXXXXXEFAGQYEDSFDDVKMQIQNYFTYKAVKT 164
G +S E GQYEDSF+DVKMQ+ NYFTYKAV+T
Sbjct: 74 GIVSKSSRKQRKDRGLVVVNELGGQYEDSFEDVKMQLINYFTYKAVRT 121
Query: 165 224
Sbjct: 134 121
Query: 225 284
Sbjct: 194 121
Query: 285 344
Sbjct: 254 121
Query: 345 357
Sbjct: 314 121
BLAST of CU106866 vs. NCBI nr
Match: gi|743837682|ref|XP_011025534.1| (PREDICTED: uncharacterized protein LOC105126381 [Populus euphratica]) HSP 1 Score: 92.8 bits (229), Expect = 6.1e-16 Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = -1
Query: 45 PCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRSSFVNLGDEWQLS----A 104
PCL D+ P TN L+S GDLVLQR S + LT S++L SSFV+ +W+LS +
Sbjct: 14 PCLCLDALPTTNNGLKSSGDLVLQRSSMKRKQLTRPGSLELGSSFVDSWHDWRLSSKAIS 73
Query: 105 GGGRQSKXXXXXXXXXXXXXEFAGQYEDSFDDVKMQIQNYFTYKAVKT 164
G +S E GQYEDSF+DVKMQ+ NYFTYKAV+T
Sbjct: 74 GIVSKSSRKQRKDRGLVVVNELGGQYEDSFEDVKMQLINYFTYKAVRT 121
Query: 165 224
Sbjct: 134 121
Query: 225 284
Sbjct: 194 121
Query: 285 344
Sbjct: 254 121
Query: 345 357
Sbjct: 314 121
BLAST of CU106866 vs. NCBI nr
Match: gi|449442529|ref|XP_004139034.1| (PREDICTED: uncharacterized protein LOC101213099 [Cucumis sativus]) HSP 1 Score: 92.4 bits (228), Expect = 8.0e-16 Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = -1
Query: 45 PCLSFDSSPVTNMSLRSGGDLVLQRK-SKAKSYLTVSKSVDLRSSFVNLGDEWQLSAGGG 104
PCL D+ P T+++L+S GD V+++K SK + L K +DL SSFV+ G EW LS
Sbjct: 19 PCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDLSSSFVDNGREWLLSVDMI 78
Query: 105 RQSKXXXXXXXXXXXXXEFAGQYEDSFDDVKMQIQNYFTYKAVKT 164
+S E GQYED+FDDVKMQ+ NYFTYKAV+T
Sbjct: 79 NRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKAVRT 123
Query: 165 224
Sbjct: 139 123
Query: 225 284
Sbjct: 199 123
Query: 285 344
Sbjct: 259 123
Query: 345 357
Sbjct: 319 123
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KX19_CUCSA | 3.1e-43 | 87.74 | Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291920 PE=4 SV=1 | [more] |
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
| Term | Definition |
|---|
This transcribed_cluster is associated with the following gene feature(s):
The following EST feature(s) are a part of this transcribed_cluster:
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PANTHER | PTHR33791 | FAMILY NOT NAMED | coord: 1..29
score: 6.3E-27coord: 52..121
score: 6.3 |
| None | No IPR available | PANTHER | PTHR33791:SF4 | CHAPERONIN-LIKE RBCX PROTEIN | coord: 1..29
score: 6.3E-27coord: 52..121
score: 6.3 |
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