CU106625 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU106625
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 7791288 .. 7791914 (-)
Sequence length	685

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAGTAAAAATAACTAAAAGTGGTTGATCAAATTCCATCCCTACACGTCCCCTTAAACTTACGGATGAACACAGCAATAGAATCAAAAGTACAAAGGCATCATTTAGAAACTATTATTTCACATGATATAATAAAAGTGCACACATGAAACATAGGGTCCTAACTAAACAGCATACCCAAACTTCCAACCGAAGTCTTATTCAGAACACCACTTCTACTCCACATACAGATTTTCCACCATGCATACTTAAAAAGCTTTTATATTAAGCATGAACCTTTGTAGTCACTGTAGAACTAAACTAAGCATTCCTTCGTCCCAGTCATTGGGAGTGGGCGGGTGGTGTTGTTTCTAGCTTCCACTTCCTTCAGACAACCATCATCATGCTCCTCAGGCATGCTCGAGCTACCCTCAGTATTTTCAGCATCAACTGTGTCGATAACTTCGAAGATGAGAGCACACACTTCTTGAAACCTCTCTTCTGATAGGGATACCACAGCAAGTAGCCTCCATGCGTTTTCCTCTGACGCCTCTTCATAATCCTTCTTCCTCTTCAACACCATGTGACCACTTATCTCCCAAACAGCAGGGTTGACTTGGGTGTCGAGTAGCTCCGCACTCACTTCCCCCAAGTGCTTACCTTCGGCCGCGACCCACGCTAAGGGCGAATTCGGTAAAGCTGGCGATT

Library


Library category	ESTs
fruit (8DPP) library	2
gynoecious flower library	3
other	1
hermaphrodite flower library	5
Cucumber leaf library	1
Cucumber male flower buds	1

Homology

[Close]

BLAST of CU106625 vs. Swiss-Prot
Match: GGAP1_ARATH (GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-25
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVS E+L+TQVNPAVWEISGHMVLKRK+DYE ASE+NAWRLLA  SLSEERF+
Sbjct: 326 AEKQALGEVSPEVLETQVNPAVWEISGHMVLKRKEDYEGASEDNAWRLLAEASLSEERFK 385

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTG--TKECLV 416
           EV AL FE I   + E     + + +++  G    V  ++N T   P+T     ECLV
Sbjct: 386 EVTALAFEAIGCSNQEEDLEGTIVHQQNSSG---NVNQKSNRTHGGPITNGTAAECLV 440

Query: 417  476
           
Sbjct: 446  440

Query: 477  536
           
Sbjct: 506  440

Query: 537  596
           
Sbjct: 566  440

Query: 597  645
           
Sbjct: 626  440

[Close]

BLAST of CU106625 vs. Swiss-Prot
Match: GGAP2_ARATH (GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-23
Identity = 62/101 (61.39%), Postives = 72/101 (71.29%), Query Frame = -3


Query: 342 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 401
           AE + LGEVS+ LLDTQVNPAVWE+SGHMVLKRK+DYE ASEE AWRLLA VSLSEERF+
Sbjct: 323 AEKQALGEVSSTLLDTQVNPAVWEMSGHMVLKRKEDYEGASEEKAWRLLAEVSLSEERFR 382

Query: 402 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNN 461
           EV  +IF+ I         G SS  EE ++    E+E +N+
Sbjct: 383 EVNTMIFDAI---------GFSSHEEEEEE----ELEEQNS 410

Query: 462  521
           
Sbjct: 443  410

Query: 522  581
           
Sbjct: 503  410

Query: 582  641
           
Sbjct: 563  410

Query: 642  645
           
Sbjct: 623  410

[Close]

BLAST of CU106625 vs. TrEMBL
Match: A0A0A0K5F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G219200 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.9e-56
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ
Sbjct: 330 AEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 389

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV 416
           EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV
Sbjct: 390 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV 445

Query: 417  476
           
Sbjct: 450  445

Query: 477  536
           
Sbjct: 510  445

Query: 537  596
           
Sbjct: 570  445

Query: 597  645
           
Sbjct: 630  445

[Close]

BLAST of CU106625 vs. TrEMBL
Match: W9R0S0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012470 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 78/116 (67.24%), Postives = 89/116 (76.72%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ
Sbjct: 330 AEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 389

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV 416
           EV ALIFE I      +   +++   E     ++EV+A   T+RP  + GT+ECLV
Sbjct: 390 EVNALIFEAI--ASGVDVSENATAELEAKPQAVEEVDATKTTSRPTMVAGTQECLV 443

Query: 417  476
           
Sbjct: 450  443

Query: 477  536
           
Sbjct: 510  443

Query: 537  596
           
Sbjct: 570  443

Query: 597  645
           
Sbjct: 630  443

[Close]

BLAST of CU106625 vs. TrEMBL
Match: B9STZ4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0752930 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.2e-31
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLA VSLSE RFQ
Sbjct: 291 AEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEARFQ 350

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV 416
           EV ALIFE I    + +   + +M E+ D   + EV A N ++    +TG +ECLV
Sbjct: 351 EVNALIFEAISYAGSSSDNEAQNMLEDEDVNSVGEVGAINQSSHCTMVTGNQECLV 406

Query: 417  476
           
Sbjct: 411  406

Query: 477  536
           
Sbjct: 471  406

Query: 537  596
           
Sbjct: 531  406

Query: 597  645
           
Sbjct: 591  406

[Close]

BLAST of CU106625 vs. TrEMBL
Match: E9M5S2_CITUN (Putative GDP-L-galactose-pyrophosphatase OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.5e-29
Identity = 78/118 (66.10%), Postives = 87/118 (73.73%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVS+ELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLA VSLSEER+Q
Sbjct: 336 AEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQ 395

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLK--EVEARNNTTRPLPMTGTKECLV 416
           EV ALIFE I   D  N   + S+  E D       EV+A N  + P  ++GT ECLV
Sbjct: 396 EVNALIFEAIARGDDANGGVAESVIGEADAKPKSGGEVDAINKNSCPAMVSGTPECLV 453

Query: 417  476
           
Sbjct: 456  453

Query: 477  536
           
Sbjct: 516  453

Query: 537  596
           
Sbjct: 576  453

Query: 597  645
           
Sbjct: 636  453

[Close]

BLAST of CU106625 vs. TrEMBL
Match: A0A067FFW7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012827mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.5e-29
Identity = 78/118 (66.10%), Postives = 87/118 (73.73%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVS+ELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLA VSLSEER+Q
Sbjct: 336 AEKQALGEVSSELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERYQ 395

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLK--EVEARNNTTRPLPMTGTKECLV 416
           EV ALIFE I   D  N   + S+  E D       EV+A N  + P  ++GT ECLV
Sbjct: 396 EVNALIFEAIARGDDANGGVAESVIGEADAKPKSGGEVDAINKNSCPAMVSGTPECLV 453

Query: 417  476
           
Sbjct: 456  453

Query: 477  536
           
Sbjct: 516  453

Query: 537  596
           
Sbjct: 576  453

Query: 597  645
           
Sbjct: 636  453

[Close]

BLAST of CU106625 vs. NCBI nr
Match: gi|449444068|ref|XP_004139797.1| (PREDICTED: GDP-L-galactose phosphorylase 1 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 3.6e-56
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ
Sbjct: 330 AEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 389

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV 416
           EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV
Sbjct: 390 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV 445

Query: 417  476
           
Sbjct: 450  445

Query: 477  536
           
Sbjct: 510  445

Query: 537  596
           
Sbjct: 570  445

Query: 597  645
           
Sbjct: 630  445

[Close]

BLAST of CU106625 vs. NCBI nr
Match: gi|659093789|ref|XP_008447718.1| (PREDICTED: GDP-L-galactose phosphorylase 1 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 5.6e-49
Identity = 106/123 (86.18%), Postives = 108/123 (87.80%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLA VSLSEERFQ
Sbjct: 330 AEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEERFQ 389

Query: 357 EVCALIFEVIDTVDAENTEGSSSMP-------EEHDDGCLKEVEARNNTTRPLPMTGTKE 416
           EVCALIFEVIDTVDAENTE SSSMP       EEH DGCLK VEARNNTT  LP+TGTKE
Sbjct: 390 EVCALIFEVIDTVDAENTEDSSSMPEEHGDGCEEHGDGCLKVVEARNNTTHSLPVTGTKE 449

Query: 417 CLV 476
           CLV
Sbjct: 450 CLV 452

Query: 477  536
           
Sbjct: 510  452

Query: 537  596
           
Sbjct: 570  452

Query: 597  645
           
Sbjct: 630  452

[Close]

BLAST of CU106625 vs. NCBI nr
Match: gi|703097436|ref|XP_010096115.1| (hypothetical protein L484_012470 [Morus notabilis])

HSP 1 Score: 144.4 bits (363), Expect = 2.4e-31
Identity = 78/116 (67.24%), Postives = 89/116 (76.72%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ
Sbjct: 330 AEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 389

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV 416
           EV ALIFE I      +   +++   E     ++EV+A   T+RP  + GT+ECLV
Sbjct: 390 EVNALIFEAI--ASGVDVSENATAELEAKPQAVEEVDATKTTSRPTMVAGTQECLV 443

Query: 417  476
           
Sbjct: 450  443

Query: 477  536
           
Sbjct: 510  443

Query: 537  596
           
Sbjct: 570  443

Query: 597  645
           
Sbjct: 630  443

[Close]

BLAST of CU106625 vs. NCBI nr
Match: gi|223531079|gb|EEF32929.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLA VSLSE RFQ
Sbjct: 291 AEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEARFQ 350

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV 416
           EV ALIFE I    + +   + +M E+ D   + EV A N ++    +TG +ECLV
Sbjct: 351 EVNALIFEAISYAGSSSDNEAQNMLEDEDVNSVGEVGAINQSSHCTMVTGNQECLV 406

Query: 417  476
           
Sbjct: 411  406

Query: 477  536
           
Sbjct: 471  406

Query: 537  596
           
Sbjct: 531  406

Query: 597  645
           
Sbjct: 591  406

[Close]

BLAST of CU106625 vs. NCBI nr
Match: gi|1000946089|ref|XP_015581034.1| (PREDICTED: GDP-L-galactose phosphorylase 1, partial [Ricinus communis])

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = -3


Query: 297 AEGKHLGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAVVSLSEERFQ 356
           AE + LGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLA VSLSE RFQ
Sbjct: 295 AEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKKDYEEASEENAWRLLAEVSLSEARFQ 354

Query: 357 EVCALIFEVIDTVDAENTEGSSSMPEEHDDGCLKEVEARNNTTRPLPMTGTKECLV 416
           EV ALIFE I    + +   + +M E+ D   + EV A N ++    +TG +ECLV
Sbjct: 355 EVNALIFEAISYAGSSSDNEAQNMLEDEDVNSVGEVGAINQSSHCTMVTGNQECLV 410

Query: 417  476
           
Sbjct: 415  410

Query: 477  536
           
Sbjct: 475  410

Query: 537  596
           
Sbjct: 535  410

Query: 597  645
           
Sbjct: 595  410

The following BLAST results are available for this feature:

BLAST of CU106625 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GGAP1_ARATH	1.5e-25	55.93	GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1	[more]
GGAP2_ARATH	3.1e-23	61.39	GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5 PE=1 SV=1	[more]

BLAST of CU106625 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5F4_CUCSA	1.9e-56	97.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G219200 PE=4 SV=1	[more]
W9R0S0_9ROSA	1.7e-31	67.24	Uncharacterized protein OS=Morus notabilis GN=L484_012470 PE=4 SV=1	[more]
B9STZ4_RICCO	8.2e-31	65.52	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0752930 PE=4 SV=1	[more]
E9M5S2_CITUN	4.5e-29	66.10	Putative GDP-L-galactose-pyrophosphatase OS=Citrus unshiu PE=2 SV=1	[more]
A0A067FFW7_CITSI	4.5e-29	66.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012827mg PE=4 SV=1	[more]

BLAST of CU106625 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444068\|ref\|XP_004139797.1\|	3.6e-56	97.41	PREDICTED: GDP-L-galactose phosphorylase 1 [Cucumis sativus]	[more]
gi\|659093789\|ref\|XP_008447718.1\|	5.6e-49	86.18	PREDICTED: GDP-L-galactose phosphorylase 1 [Cucumis melo]	[more]
gi\|703097436\|ref\|XP_010096115.1\|	2.4e-31	67.24	hypothetical protein L484_012470 [Morus notabilis]	[more]
gi\|223531079\|gb\|EEF32929.1\|	1.5e-30	65.52	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000946089\|ref\|XP_015581034.1\|	1.5e-30	65.52	PREDICTED: GDP-L-galactose phosphorylase 1, partial [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR026506	GDPGP

Vocabulary: **Molecular Function**
Term	Definition
GO:0080048	GDP-D-glucose phosphorylase activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0080048	GDP-D-glucose phosphorylase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G219200	Csa7G219200	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KNALL	FKNP3UI02KNALL	EST
FKNP3UI02LP9R2	FKNP3UI02LP9R2	EST
G0041575	G0041575	EST
G0154531	G0154531	EST
G0195189	G0195189	EST
GH571688	GH571688	EST
H0078108	H0078108	EST
H0112865	H0112865	EST
H0169283	H0169283	EST
H0179133	H0179133	EST
H0189939	H0189939	EST
RG6_H01	RG6_H01	EST
csa02-4ms4-e05	csa02-4ms4-e05	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026506	GDP-L-galactose/GDP-D-glucose phosphorylase	PANTHER	PTHR20884	FAMILY NOT NAMED	coord: 22..111 score: 1.4
None	No IPR available	PANTHER	PTHR20884:SF10	SUBFAMILY NOT NAMED	coord: 22..111 score: 1.4