CU106185 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU106185
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 9427819 .. 9428180 (+)
Sequence length	371

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGCGAGCGAGCTTTGAGGATCCTGAGCGAGCTTCTCGAAAATGTCGTTGATGTAAGTCTGTTCATAATCCCCATGGCTTTGCTAGAGATTCCGATGTCGGGATGTACTTGCTTGAGGACTTTGAAGATGTAGATCTTGTAAGTCTCAATGCTCTTCTTGGCTCTCTTCTTCTTCTTATCGGAGGCGTCTTTGGGAAGCTTCTTCTCGGCTCGTGGCTTCTTCTCTGCCGGAGCTTTCTCGGCCTTCTTCTCCTCCGCCGCTGGCTTCTTCTCGGCGGGCTTCTTCTCAGCCTTTGGCGCCATTGCTAAATATAACGAAGGAATTTGGAGGTTGTATCGAAAATGCGAGTAAAAGCGAGTATTCCCCGGCCG

Library


Library category	ESTs
fruit (8DPP) library	4
gynoecious flower library	5
hermaphrodite flower library	7

Homology

[Close]

BLAST of CU106185 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09
Identity = 29/30 (96.67%), Postives = 28/30 (93.33%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 58  VETYKIYIFKVLKQVHPDIGISSKAMGIMN 87

Query: 120  150
           
Sbjct: 118  87

[Close]

BLAST of CU106185 vs. Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09
Identity = 29/30 (96.67%), Postives = 28/30 (93.33%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 55  VETYKIYIFKVLKQVHPDIGISSKAMGIMN 84

Query: 120  150
           
Sbjct: 115  84

[Close]

BLAST of CU106185 vs. Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09
Identity = 29/30 (96.67%), Postives = 28/30 (93.33%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 60  VETYKIYIFKVLKQVHPDIGISSKAMGIMN 89

Query: 120  150
           
Sbjct: 120  89

[Close]

BLAST of CU106185 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09
Identity = 29/30 (96.67%), Postives = 28/30 (93.33%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 57  VETYKIYIFKVLKQVHPDIGISSKAMGIMN 86

Query: 120  150
           
Sbjct: 117  86

[Close]

BLAST of CU106185 vs. Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09
Identity = 29/30 (96.67%), Postives = 28/30 (93.33%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           +ETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 55  VETYKIYIFKVLKQVHPDIGISSKAMGIMN 84

Query: 120  150
           
Sbjct: 115  84

[Close]

BLAST of CU106185 vs. TrEMBL
Match: W1PIC1_AMBTC (Histone H2B OS=Amborella trichopoda GN=AMTR_s00012p00067980 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 58  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 87

Query: 120  150
           
Sbjct: 118  87

[Close]

BLAST of CU106185 vs. TrEMBL
Match: A0A0D2SV51_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 51  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 80

Query: 120  150
           
Sbjct: 111  80

[Close]

BLAST of CU106185 vs. TrEMBL
Match: A0A0D2NPV9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 51  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 80

Query: 120  150
           
Sbjct: 111  80

[Close]

BLAST of CU106185 vs. TrEMBL
Match: A0A0D2S0C9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 51  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 80

Query: 120  150
           
Sbjct: 111  80

[Close]

BLAST of CU106185 vs. TrEMBL
Match: A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 52  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 81

Query: 120  150
           
Sbjct: 112  81

[Close]

BLAST of CU106185 vs. NCBI nr
Match: gi|971460092|emb|CUT18448.1| (H2B.3, partial [Lilium davidii var. unicolor])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 50  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 79

Query: 120  150
           
Sbjct: 110  79

[Close]

BLAST of CU106185 vs. NCBI nr
Match: gi|641854133|gb|KDO72941.1| (hypothetical protein CISIN_1g032181mg [Citrus sinensis])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 56  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 85

Query: 120  150
           
Sbjct: 116  85

[Close]

BLAST of CU106185 vs. NCBI nr
Match: gi|778659255|ref|XP_011654070.1| (PREDICTED: histone H2B.7 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 52  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 81

Query: 120  150
           
Sbjct: 112  81

[Close]

BLAST of CU106185 vs. NCBI nr
Match: gi|297793547|ref|XP_002864658.1| (hypothetical protein ARALYDRAFT_496128 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 57  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 86

Query: 120  150
           
Sbjct: 117  86

[Close]

BLAST of CU106185 vs. NCBI nr
Match: gi|672114333|ref|XP_008776513.1| (PREDICTED: probable histone H2B.1 [Phoenix dactylifera])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -1


Query: 60  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 119
           IETYKIYIFKVLKQVHPDIGISSKAMGIMN
Sbjct: 57  IETYKIYIFKVLKQVHPDIGISSKAMGIMN 86

Query: 120  150
           
Sbjct: 117  86

The following BLAST results are available for this feature:

BLAST of CU106185 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B1_MEDTR	3.1e-09	96.67	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]
H2B10_ARATH	3.1e-09	96.67	Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3	[more]
H2B11_ARATH	3.1e-09	96.67	Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5	[more]
H2B_GOSHI	3.1e-09	96.67	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]
H2B7_ARATH	3.1e-09	96.67	Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3	[more]

BLAST of CU106185 vs. TrEMBL


Match Name	E-value	Identity	Description
W1PIC1_AMBTC	2.6e-07	100.00	Histone H2B OS=Amborella trichopoda GN=AMTR_s00012p00067980 PE=3 SV=1	[more]
A0A0D2SV51_GOSRA	2.6e-07	100.00	Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1	[more]
A0A0D2NPV9_GOSRA	2.6e-07	100.00	Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1	[more]
A0A0D2S0C9_GOSRA	2.6e-07	100.00	Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1	[more]
A0A0A0LST8_CUCSA	2.6e-07	100.00	Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1	[more]

BLAST of CU106185 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|971460092\|emb\|CUT18448.1\|	3.8e-07	100.00	H2B.3, partial [Lilium davidii var. unicolor]	[more]
gi\|641854133\|gb\|KDO72941.1\|	3.8e-07	100.00	hypothetical protein CISIN_1g032181mg [Citrus sinensis]	[more]
gi\|778659255\|ref\|XP_011654070.1\|	3.8e-07	100.00	PREDICTED: histone H2B.7 [Cucumis sativus]	[more]
gi\|297793547\|ref\|XP_002864658.1\|	3.8e-07	100.00	hypothetical protein ARALYDRAFT_496128 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|672114333\|ref\|XP_008776513.1\|	3.8e-07	100.00	PREDICTED: probable histone H2B.1 [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G132130	Csa1G132130	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K5Z8P	FKNP3UI02K5Z8P	EST
FKNP3UI02KHWGV	FKNP3UI02KHWGV	EST
FKNP3UI02LI1Q0	FKNP3UI02LI1Q0	EST
FKNP3UI02LZYPT	FKNP3UI02LZYPT	EST
G0011857	G0011857	EST
G0131104	G0131104	EST
G0178770	G0178770	EST
G0190749	G0190749	EST
G0201995	G0201995	EST
H0036987	H0036987	EST
H0044398	H0044398	EST
H0055975	H0055975	EST
H0159044	H0159044	EST
H0162806	H0162806	EST
H0164750	H0164750	EST
H0192377	H0192377	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 74..94 score: 2.3E-11coord: 55..73 score: 2.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 13..81 score: 5.2
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 45..100 score: 0.
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..84 score: 5.
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 22..90 score: 4.0
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 26..90 score: 1.29