CU103467 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU103467
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 4677385 .. 4678160 (+)
Sequence length	245

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATGCTCCATCTGTAGCTGCTGAAGTTTGCACCTTCCACTGATCAAGTCCAAGTTGTAGAGTACCCTCAAGGTTAGCCTGCCTTACTGATTCTTCACTTGCATATCCCTGTAACAAATGAAGAAAGATTTCTGCTTCAAGGTCTTCAGATGACAACTTGGTTGAGCAAAGAACGTTTAACTTTTTTTCTTCACTGTAAGCAAGACATCTCTATAAGATGGTCTCCAACCCCTTAACGTCGACCGAG

Library


Library category	ESTs
fruit (8DPP) library	4

Homology

[Close]

BLAST of CU103467 vs. TrEMBL
Match: A0A0A0LT63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043030 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.5e-24
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = -2


Query: 2   KKLNVLCSTKLSSEDLEAEIFLHLLQGYASEESVRQANLEGTLQLGLDQWKVQTSAATDG 61
           KKLNVLCSTKLSSEDLEAEIFLHLLQ YASEESVRQANLEGTLQLGLDQWKVQTSAATDG
Sbjct: 145 KKLNVLCSTKLSSEDLEAEIFLHLLQEYASEESVRQANLEGTLQLGLDQWKVQTSAATDG 204

Query: 62  A 121
           A
Sbjct: 205 A 205

Query: 122  181
           
Sbjct: 265  205

Query: 182  185
           
Sbjct: 325  205

[Close]

BLAST of CU103467 vs. TrEMBL
Match: A0A0A0LT63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043030 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-02
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = -3


Query: 181 RSTLRGWRPSYRDVLLTVKKK 240
           RSTLRGWRPSYRDVLLTV+KK
Sbjct: 126 RSTLRGWRPSYRDVLLTVRKK 146

Query: 241  244
           
Sbjct: 186  146

HSP 2 Score: 73.6 bits (179), Expect = 1.3e-10
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = -2


Query: 14  RCLAYSEEKKLNVLCSTKLSSEDLEAEIFLHLLQGYASEES---------VRQANLEGTL 73
           R +  S  KKLN+ CS+KLS+EDLEAEIFLHLL+ Y+SEES            +N++ +L
Sbjct: 140 RNVLLSVRKKLNIPCSSKLSTEDLEAEIFLHLLRNYSSEESGTFPGLWEHNNISNIQNSL 199

Query: 74  QLGLDQWKVQTSAA 133
           +LGL QWKVQ  AA
Sbjct: 200 ELGLSQWKVQVLAA 213

Query: 134  193
           
Sbjct: 260  213

Query: 194  209
           
Sbjct: 320  213

[Close]

BLAST of CU103467 vs. TrEMBL
Match: A0A0D2N3S3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069400 PE=4 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 3.2e-01
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = -3


Query: 181 RSTLRGWRPSYRDVLLTVKKK 240
           RSTLRGWRPSYR+VLL+V+KK
Sbjct: 129 RSTLRGWRPSYRNVLLSVRKK 149

Query: 241  244
           
Sbjct: 189  149

HSP 2 Score: 73.6 bits (179), Expect = 1.3e-10
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = -2


Query: 14  RCLAYSEEKKLNVLCSTKLSSEDLEAEIFLHLLQGYASEES---------VRQANLEGTL 73
           R +  S  KKLN+ CS+KLS+EDLEAEIFLHLL+ Y+SEES            +N++ +L
Sbjct: 142 RNVLLSVRKKLNIPCSSKLSTEDLEAEIFLHLLRNYSSEESGTFPGLWEHNNISNIQNSL 201

Query: 74  QLGLDQWKVQTSAA 133
           +LGL QWKVQ  AA
Sbjct: 202 ELGLSQWKVQVLAA 215

Query: 134  193
           
Sbjct: 262  215

Query: 194  209
           
Sbjct: 322  215

[Close]

BLAST of CU103467 vs. TrEMBL
Match: A0A0D2LSI1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069400 PE=4 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 3.2e-01
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = -3


Query: 181 RSTLRGWRPSYRDVLLTVKKK 240
           RSTLRGWRPSYR+VLL+V+KK
Sbjct: 131 RSTLRGWRPSYRNVLLSVRKK 151

Query: 241  244
           
Sbjct: 191  151

HSP 2 Score: 73.6 bits (179), Expect = 1.3e-10
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = -2


Query: 14  RCLAYSEEKKLNVLCSTKLSSEDLEAEIFLHLLQGYASEES---------VRQANLEGTL 73
           R +  S  KKLN+ CS+KLS+EDLEAEIFLHLL+ Y+SEES            +N++ +L
Sbjct: 142 RNVLLSVRKKLNIPCSSKLSTEDLEAEIFLHLLRNYSSEESGTFPGLWEHNNISNIQNSL 201

Query: 74  QLGLDQWKVQTSAA 133
           +LGL QWKVQ  AA
Sbjct: 202 ELGLSQWKVQVLAA 215

Query: 134  193
           
Sbjct: 262  215

Query: 194  209
           
Sbjct: 322  215

[Close]

BLAST of CU103467 vs. TrEMBL
Match: A0A0D2QIH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069400 PE=4 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 3.2e-01
Identity = 18/21 (85.71%), Postives = 21/21 (100.00%), Query Frame = -3


Query: 181 RSTLRGWRPSYRDVLLTVKKK 240
           RSTLRGWRPSYR+VLL+V+KK
Sbjct: 131 RSTLRGWRPSYRNVLLSVRKK 151

Query: 241  244
           
Sbjct: 191  151

HSP 2 Score: 73.6 bits (179), Expect = 1.3e-10
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = -2


Query: 14  RCLAYSEEKKLNVLCSTKLSSEDLEAEIFLHLLQGYASEES---------VRQANLEGTL 73
           R +  S  KKLN+ CS+KLS+EDLEAEIFLHLL+ Y+SEES            +N++ +L
Sbjct: 142 RNVLLSVRKKLNIPCSSKLSTEDLEAEIFLHLLRNYSSEESGTFPGLWEHNNISNIQNSL 201

Query: 74  QLGLDQWKVQTSAA 133
           +LGL QWKVQ  AA
Sbjct: 202 ELGLSQWKVQVLAA 215

Query: 134  193
           
Sbjct: 262  215

Query: 194  209
           
Sbjct: 322  215

[Close]

BLAST of CU103467 vs. NCBI nr
Match: gi|449439491|ref|XP_004137519.1| (PREDICTED: uncharacterized protein LOC101204111 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = -2


Query: 2   KKLNVLCSTKLSSEDLEAEIFLHLLQGYASEESVRQANLEGTLQLGLDQWKVQTSAATDG 61
           KKLNVLCSTKLSSEDLEAEIFLHLLQ YASEESVRQANLEGTLQLGLDQWKVQTSAATDG
Sbjct: 145 KKLNVLCSTKLSSEDLEAEIFLHLLQEYASEESVRQANLEGTLQLGLDQWKVQTSAATDG 204

Query: 62  A 121
           A
Sbjct: 205 A 205

Query: 122  181
           
Sbjct: 265  205

Query: 182  185
           
Sbjct: 325  205

[Close]

BLAST of CU103467 vs. NCBI nr
Match: gi|659066927|ref|XP_008467146.1| (PREDICTED: uncharacterized protein LOC103504561 isoform X2 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = -2


Query: 2   KKLNVLCSTKLSSEDLEAEIFLHLLQGYASEESVRQANLEGTLQLGLDQWKVQTSAATDG 61
           KKLNV CSTKLSSEDLEAEIFLHLLQ YASEESVR+ANLEG+LQLGLD WKVQT AATDG
Sbjct: 146 KKLNVPCSTKLSSEDLEAEIFLHLLQEYASEESVREANLEGSLQLGLDLWKVQTLAATDG 205

Query: 62  A 121
           A
Sbjct: 206 A 206

Query: 122  181
           
Sbjct: 266  206

Query: 182  185
           
Sbjct: 326  206

[Close]

BLAST of CU103467 vs. NCBI nr
Match: gi|659066929|ref|XP_008467154.1| (PREDICTED: uncharacterized protein LOC103504561 isoform X3 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = -2


Query: 2   KKLNVLCSTKLSSEDLEAEIFLHLLQGYASEESVRQANLEGTLQLGLDQWKVQTSAATDG 61
           KKLNV CSTKLSSEDLEAEIFLHLLQ YASEESVR+ANLEG+LQLGLD WKVQT AATDG
Sbjct: 145 KKLNVPCSTKLSSEDLEAEIFLHLLQEYASEESVREANLEGSLQLGLDLWKVQTLAATDG 204

Query: 62  A 121
           A
Sbjct: 205 A 205

Query: 122  181
           
Sbjct: 265  205

Query: 182  185
           
Sbjct: 325  205

[Close]

BLAST of CU103467 vs. NCBI nr
Match: gi|659066931|ref|XP_008467162.1| (PREDICTED: uncharacterized protein LOC103504561 isoform X4 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = -2


Query: 2   KKLNVLCSTKLSSEDLEAEIFLHLLQGYASEESVRQANLEGTLQLGLDQWKVQTSAATDG 61
           KKLNV CSTKLSSEDLEAEIFLHLLQ YASEESVR+ANLEG+LQLGLD WKVQT AATDG
Sbjct: 60  KKLNVPCSTKLSSEDLEAEIFLHLLQEYASEESVREANLEGSLQLGLDLWKVQTLAATDG 119

Query: 62  A 121
           A
Sbjct: 120 A 120

Query: 122  181
           
Sbjct: 180  120

Query: 182  185
           
Sbjct: 240  120

[Close]

BLAST of CU103467 vs. NCBI nr
Match: gi|659066925|ref|XP_008467136.1| (PREDICTED: uncharacterized protein LOC103504561 isoform X1 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = -2


Query: 2   KKLNVLCSTKLSSEDLEAEIFLHLLQGYASEESVRQANLEGTLQLGLDQWKVQTSAATDG 61
           KKLNV CSTKLSSEDLEAEIFLHLLQ YASEESVR+ANLEG+LQLGLD WKVQT AATDG
Sbjct: 153 KKLNVPCSTKLSSEDLEAEIFLHLLQEYASEESVREANLEGSLQLGLDLWKVQTLAATDG 212

Query: 62  A 121
           A
Sbjct: 213 A 213

Query: 122  181
           
Sbjct: 273  213

Query: 182  185
           
Sbjct: 333  213

The following BLAST results are available for this feature:

BLAST of CU103467 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT63_CUCSA	4.5e-24	98.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043030 PE=4 SV=1	[more]
A0A0A0LT63_CUCSA	2.9e-02	95.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043030 PE=4 SV=1	[more]
A0A0D2N3S3_GOSRA	3.2e-01	85.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069400 PE=4 SV=1	[more]
A0A0D2LSI1_GOSRA	3.2e-01	85.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069400 PE=4 SV=1	[more]
A0A0D2QIH7_GOSRA	3.2e-01	85.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069400 PE=4 SV=1	[more]

BLAST of CU103467 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439491\|ref\|XP_004137519.1\|	1.4e-23	98.36	PREDICTED: uncharacterized protein LOC101204111 [Cucumis sativus]	[more]
gi\|659066927\|ref\|XP_008467146.1\|	2.0e-20	90.16	PREDICTED: uncharacterized protein LOC103504561 isoform X2 [Cucumis melo]	[more]
gi\|659066929\|ref\|XP_008467154.1\|	2.0e-20	90.16	PREDICTED: uncharacterized protein LOC103504561 isoform X3 [Cucumis melo]	[more]
gi\|659066931\|ref\|XP_008467162.1\|	2.0e-20	90.16	PREDICTED: uncharacterized protein LOC103504561 isoform X4 [Cucumis melo]	[more]
gi\|659066925\|ref\|XP_008467136.1\|	2.0e-20	90.16	PREDICTED: uncharacterized protein LOC103504561 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G043030	Csa1G043030	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K75LN	FKNP3UI02K75LN	EST
FKNP3UI02MZROQ	FKNP3UI02MZROQ	EST
FKNP3UI02NYRWO	FKNP3UI02NYRWO	EST
FKNP3UI02OON7Y	FKNP3UI02OON7Y	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37203	FAMILY NOT NAMED	coord: 2..78 score: 1.1
None	No IPR available	PANTHER	PTHR37203:SF2	SUBFAMILY NOT NAMED	coord: 2..78 score: 1.1