CU102413 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU102413
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 16133483 .. 16134857 (+)
Sequence length638
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGATTCCTTCGTATAAAAATATCTAAGGCAAACGAGTAAGAAAAAAACAATAATGCGTAGAATCGAGGGGGAATGAACAAATAATCGCCTACAAGATTATTCAGGTGCGTGCATGAATCAAATCCTTTGCTATTGAATCTCATTGCAAGGTCACTTTGTTGGCTATTTTAATTTTATTTGAAATAGGGTTCATTAAGTGGATTTAATTCATAGTCTCCGACGATGGAAAACAATGGTATAAAAGCAGAATTTCGTAAGCCCTCTTCTGAAACAGCTGGCAGAAAGTATAGGCGTCGTTCTTCTGTTAGTGGGTCGTCATCTGATGAAAGTCCTAAACGAGACCGTAGTTCTAGTCCAAAGCTCTTGAGAGATGATGCTTCAAAACATTCTGAACGGAAACCAAAGAAGGAAAGAGGATGAAAGGGATTTGAACAAGGATTCTAGAAATCATCATAGTCGAAGTTCTGATTCTTATAGATATTCTGATCGAAAATCCTCTAGAAGTTTGCATGGTTACTCTAGGCATGATGATTATGTCAGACATGACAAATATGCAGATGAAGAAAGAGATTATGAGCGTTTATCCTCTCGTTCTAATAGGGAGTCAAAGGGCAGTGCTCATTATGATCAT
Homology
[Close]
BLAST of CU102413 vs. TrEMBL
Match: A0A0A0KYU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G430840 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.7e-19
Identity = 51/76 (67.11%), Postives = 51/76 (67.11%), Query Frame = 3 

Query: 411 RRKEDERDLXXXXXXXXXXXXXXXXXXXXXXXXXLHGYSRHDDYVRHDKYADEERDYERL 470
           RRKEDERDL                         LHGYSRHDDYVRHDKYADEERDYERL
Sbjct: 61  RRKEDERDLNKDSRNHHSRSSDSYRYSDRKSSRSLHGYSRHDDYVRHDKYADEERDYERL 120

Query: 471 SSRSNRESKGSAHYDH 530
           SSRSNRESKGSAHYDH
Sbjct: 121 SSRSNRESKGSAHYDH 136

Query: 531  590
           
Sbjct: 181  136

Query: 591  639
           
Sbjct: 241  136

[Close]
BLAST of CU102413 vs. TrEMBL
Match: A0A0A0KYU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G430840 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 39/56 (69.64%), Postives = 39/56 (69.64%), Query Frame = 2 

Query: 230 MENNGIKAEFRKPSSETAGXXXXXXXXXXXXXXXXXPKRDRSSSPKLLRDDASKHS 289
           MENNGIKAEFRKPSSETAG                 PKRDRSSSPKLLRDDASKHS
Sbjct: 1   MENNGIKAEFRKPSSETAGRKYRRRSSVSGSSSDESPKRDRSSSPKLLRDDASKHS 56

Query: 290  349
           
Sbjct: 61   56

Query: 350  398
           
Sbjct: 121  56


HSP 2 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 3 

Query: 516 HGYSRHDDYVRHDKYADEERDYERLSSRSNRESKGSAHYDH 575
           HGYSRHD+YVRHDK+ADE   Y+RLSSRS RES+ S H DH
Sbjct: 106 HGYSRHDNYVRHDKFADEGSKYDRLSSRSGRESRFSTHSDH 146

Query: 576  635
           
Sbjct: 166  146

Query: 636  639
           
Sbjct: 226  146

[Close]
BLAST of CU102413 vs. TrEMBL
Match: A0A061EWP6_THECC (Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_024098 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 3 

Query: 516 HGYSRHDDYVRHDKYADEERDYERLSSRSNRESKGSAHYDH 575
           HGYSRHD+YVRHDK+ADE   Y+RLSSRS RES+ S H DH
Sbjct: 106 HGYSRHDNYVRHDKFADEGSKYDRLSSRSGRESRFSTHSDH 146

Query: 576  635
           
Sbjct: 166  146

Query: 636  639
           
Sbjct: 226  146

[Close]
BLAST of CU102413 vs. TrEMBL
Match: A0A061EW25_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_024098 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 3 

Query: 516 HGYSRHDDYVRHDKYADEERDYERLSSRSNRESKGSAHYDH 575
           HGYSRHD+YVRHDK+ADE   Y+RLSSRS RES+ S H DH
Sbjct: 106 HGYSRHDNYVRHDKFADEGSKYDRLSSRSGRESRFSTHSDH 146

Query: 576  635
           
Sbjct: 166  146

Query: 636  639
           
Sbjct: 226  146

[Close]
BLAST of CU102413 vs. TrEMBL
Match: A0A061EVL4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_024098 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 3 

Query: 516 HGYSRHDDYVRHDKYADEERDYERLSSRSNRESKGSAHYDH 575
           HGYSRHD+YVRHDK+ADE   Y+RLSSRS RES+ S H DH
Sbjct: 106 HGYSRHDNYVRHDKFADEGSKYDRLSSRSGRESRFSTHSDH 146

Query: 576  635
           
Sbjct: 166  146

Query: 636  639
           
Sbjct: 226  146

[Close]
BLAST of CU102413 vs. NCBI nr
Match: gi|778694717|ref|XP_011653854.1| (PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 51/76 (67.11%), Postives = 51/76 (67.11%), Query Frame = 3 

Query: 411 RRKEDERDLXXXXXXXXXXXXXXXXXXXXXXXXXLHGYSRHDDYVRHDKYADEERDYERL 470
           RRKEDERDL                         LHGYSRHDDYVRHDKYADEERDYERL
Sbjct: 61  RRKEDERDLNKDSRNHHSRSSDSYRYSDRKSSRSLHGYSRHDDYVRHDKYADEERDYERL 120

Query: 471 SSRSNRESKGSAHYDH 530
           SSRSNRESKGSAHYDH
Sbjct: 121 SSRSNRESKGSAHYDH 136

Query: 531  590
           
Sbjct: 181  136

Query: 591  639
           
Sbjct: 241  136

[Close]
BLAST of CU102413 vs. NCBI nr
Match: gi|449453167|ref|XP_004144330.1| (PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 51/76 (67.11%), Postives = 51/76 (67.11%), Query Frame = 3 

Query: 411 RRKEDERDLXXXXXXXXXXXXXXXXXXXXXXXXXLHGYSRHDDYVRHDKYADEERDYERL 470
           RRKEDERDL                         LHGYSRHDDYVRHDKYADEERDYERL
Sbjct: 61  RRKEDERDLNKDSRNHHSRSSDSYRYSDRKSSRSLHGYSRHDDYVRHDKYADEERDYERL 120

Query: 471 SSRSNRESKGSAHYDH 530
           SSRSNRESKGSAHYDH
Sbjct: 121 SSRSNRESKGSAHYDH 136

Query: 531  590
           
Sbjct: 181  136

Query: 591  639
           
Sbjct: 241  136

[Close]
BLAST of CU102413 vs. NCBI nr
Match: gi|659111379|ref|XP_008455720.1| (PREDICTED: micronuclear linker histone polyprotein isoform X2 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 2.2e-15
Identity = 48/76 (63.16%), Postives = 50/76 (65.79%), Query Frame = 3 

Query: 411 RRKEDERDLXXXXXXXXXXXXXXXXXXXXXXXXXLHGYSRHDDYVRHDKYADEERDYERL 470
           RRKEDERDL                         LHGYSRHDDY RHDKYADEERDYER+
Sbjct: 62  RRKEDERDLNKDSRNHHSRGSDSYRYSDRKSSRSLHGYSRHDDYARHDKYADEERDYERV 121

Query: 471 SSRSNRESKGSAHYDH 530
           SSRSNR+SKGSAHYDH
Sbjct: 122 SSRSNRDSKGSAHYDH 137

Query: 531  590
           
Sbjct: 182  137

Query: 591  639
           
Sbjct: 242  137

[Close]
BLAST of CU102413 vs. NCBI nr
Match: gi|659111381|ref|XP_008455721.1| (PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X3 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 2.2e-15
Identity = 48/76 (63.16%), Postives = 50/76 (65.79%), Query Frame = 3 

Query: 411 RRKEDERDLXXXXXXXXXXXXXXXXXXXXXXXXXLHGYSRHDDYVRHDKYADEERDYERL 470
           RRKEDERDL                         LHGYSRHDDY RHDKYADEERDYER+
Sbjct: 62  RRKEDERDLNKDSRNHHSRGSDSYRYSDRKSSRSLHGYSRHDDYARHDKYADEERDYERV 121

Query: 471 SSRSNRESKGSAHYDH 530
           SSRSNR+SKGSAHYDH
Sbjct: 122 SSRSNRDSKGSAHYDH 137

Query: 531  590
           
Sbjct: 182  137

Query: 591  639
           
Sbjct: 242  137

[Close]
BLAST of CU102413 vs. NCBI nr
Match: gi|659111383|ref|XP_008455722.1| (PREDICTED: serine/threonine-protein kinase fray2 isoform X4 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 2.2e-15
Identity = 48/76 (63.16%), Postives = 50/76 (65.79%), Query Frame = 3 

Query: 411 RRKEDERDLXXXXXXXXXXXXXXXXXXXXXXXXXLHGYSRHDDYVRHDKYADEERDYERL 470
           RRKEDERDL                         LHGYSRHDDY RHDKYADEERDYER+
Sbjct: 62  RRKEDERDLNKDSRNHHSRGSDSYRYSDRKSSRSLHGYSRHDDYARHDKYADEERDYERV 121

Query: 471 SSRSNRESKGSAHYDH 530
           SSRSNR+SKGSAHYDH
Sbjct: 122 SSRSNRDSKGSAHYDH 137

Query: 531  590
           
Sbjct: 182  137

Query: 591  639
           
Sbjct: 242  137

The following BLAST results are available for this feature:
BLAST of CU102413 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYU7_CUCSA6.7e-1967.11Uncharacterized protein OS=Cucumis sativus GN=Csa_4G430840 PE=4 SV=1[more]
A0A0A0KYU7_CUCSA1.5e-1069.64Uncharacterized protein OS=Cucumis sativus GN=Csa_4G430840 PE=4 SV=1[more]
A0A061EWP6_THECC1.1e-0873.17Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_024098 PE... [more]
A0A061EW25_THECC1.1e-0873.17Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_024098 PE=4 SV=1[more]
A0A061EVL4_THECC1.1e-0873.17Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_024098 PE=4 SV=1[more]
BLAST of CU102413 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778694717|ref|XP_011653854.1|1.5e-1667.11PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X1 [Cucumis sativu... [more]
gi|449453167|ref|XP_004144330.1|1.5e-1667.11PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Cucumis sativu... [more]
gi|659111379|ref|XP_008455720.1|2.2e-1563.16PREDICTED: micronuclear linker histone polyprotein isoform X2 [Cucumis melo][more]
gi|659111381|ref|XP_008455721.1|2.2e-1563.16PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X3 [Cucumis melo][more]
gi|659111383|ref|XP_008455722.1|2.2e-1563.16PREDICTED: serine/threonine-protein kinase fray2 isoform X4 [Cucumis melo][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G430840Csa4G430840gene
Csa4G430850Csa4G430850gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02K76R0FKNP3UI02K76R0EST
FKNP3UI02LLTQ8FKNP3UI02LLTQ8EST
FKNP3UI02M3WQ5FKNP3UI02M3WQ5EST
FKNP3UI02MJZBWFKNP3UI02MJZBWEST
FKNP3UI02N93F5FKNP3UI02N93F5EST
FKNP3UI02NG70DFKNP3UI02NG70DEST
G0124758G0124758EST
G0142524G0142524EST
G0197425G0197425EST
H0015654H0015654EST