CU101992 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU101992
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1
Location	Chr7 : 6736880 .. 6739432 (-)
Sequence length	1138

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTCTCCATAAACATTTATATATTCAAAAGCTTCACATTGTAATTTCTTTCACACAAAACTATTCCCATGCGTTTTTCCTCCTCATCGGAGACATAATCACATCATTCAAATATAAAGGTCAGTCAACATCGACGGCCACCACCAGACTTCTCTCAACTCCGAGTCATGGCCGTTACACGAGAGCCAGCTGTGCTTAGCGAATCCTCCTCTCTCTCTTTCTCTCTCGCCGGAATTATGCTCTCCCACCGTTCCTTCTTCAACTTAACAATGCTTCTTCTCTTCTTCCTCTCACTGCTTTTCACTTTTTCTTCCTCTGCTTTCATTTCAGGACATGCCTTTGAATCCAACCCTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGACTTGTCCAGTGAACTTTGAATTCTTAAACTACACAATCATCACAAGCAAGTGCAAGGGGCCTCGATACCCTCCCAAGTTCTGTTGTTCAGCTTTGAAAGAATTTGCTTGCCCTTATGTCGAAGATCTCAATGATTTAACAAATGATTGTGCTTCGACCATGTTCAGTTACATTAACTTGTATGGAAAATACCCTCCTGGTCTCTTCTCTAGCGAGTGCAAGGAGGGGAAGGAAGGTCTAGAGTGCCCTGCACTCCCACCCTCCACTTCAGCTGATCTAAGTTGGGGCTCGAAAACAAGCTTACCATCGTATTCACTGATTCTCTTAACTGGATTCGTACTGCTGGTACGGCTATTATGATAAGGTCCAAATTCCTTCCATTTTTTTCCCTTTCTTATTTGTTACTGTATGTTAAACATACTTGAAAAATTGCAATTCTTTATTACCATGTATTTATTATAATAGTTTCATAGGCTAAACTTGTTTTATCTGTCTACCACTTTGATAGCTGTGGAAAGCGAGTTCTTATTCATGAGATTGAACTGCAAAAGTTCTTATTTGAGGTCCTTTCTATGTTTTTATTTGGTCAAGGTGACCAGGTGTATCGTCATCATCATATATAGAGTTGTTTGCGACATGTTTCATTTTATCATGTGATGTAATATAGAACCATTACTAAACTTTCATTTATGGTTGATTTGAAATTTTAGTTTTCTTTTTGTTCATATAAAAATTATTCTTTATTTTCATAGT

Library


Library category	ESTs
fruit (8DPP) library	13
gynoecious flower library	2
hermaphrodite flower library	3
Cucumber female flower buds	1

Homology

[Close]

BLAST of CU101992 vs. Swiss-Prot
Match: LRE_ARATH (GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-32
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KK C VNFE+++Y ++T +CKGP +P K CCSA KEFACPYV  +ND+ +DCA TMFSY+
Sbjct: 43  KKKCEVNFEYMDYKVLTKRCKGPAFPAKECCSAFKEFACPYVSQINDMNSDCAQTMFSYM 102

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPSY 499
           N+YG YP GLF++EC+E K+GL CP LPP  S +L+  +  S P +
Sbjct: 103 NIYGNYPTGLFANECRERKDGLVCP-LPPLYSHNLNASTADSTPRF 147

Query: 500  559
           
Sbjct: 163  147

Query: 560  619
           
Sbjct: 223  147

Query: 620  679
           
Sbjct: 283  147

Query: 680  698
           
Sbjct: 343  147

[Close]

BLAST of CU101992 vs. TrEMBL
Match: A0A0A0K362_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 7.7e-58
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KK CPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI
Sbjct: 49  KKACPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 108

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPSYS 499
           NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPSYS
Sbjct: 109 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPSYS 155

Query: 500  559
           
Sbjct: 169  155

Query: 560  619
           
Sbjct: 229  155

Query: 620  679
           
Sbjct: 289  155

Query: 680  701
           
Sbjct: 349  155

[Close]

BLAST of CU101992 vs. TrEMBL
Match: A0A0A0K362_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 1.5e+00
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 1


Query: 328 GHAFESNPSIGRNLLQAKK 385
           GHAFESNPSIGRNLLQAKK
Sbjct: 32  GHAFESNPSIGRNLLQAKK 50

HSP 2 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 82/105 (78.10%), Postives = 86/105 (81.90%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KK C VNFEFLNYTIITSKCKGP YPPK CC A KEFACPYV+ LNDLTNDCASTMFSYI
Sbjct: 53  KKGCSVNFEFLNYTIITSKCKGPSYPPKDCCGAFKEFACPYVDVLNDLTNDCASTMFSYI 112

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPS 499
           NLYGKYPPGLF+ EC+EGKEGL CPALPPS  AD +       PS
Sbjct: 113 NLYGKYPPGLFAHECREGKEGLACPALPPSALADDTSSQVVHFPS 157

Query: 500  559
           
Sbjct: 173  157

Query: 560  619
           
Sbjct: 233  157

Query: 620  679
           
Sbjct: 293  157

Query: 680  695
           
Sbjct: 353  157

[Close]

BLAST of CU101992 vs. TrEMBL
Match: A0A061F3D9_THECC (Lorelei-like-gpi-anchored protein 1 OS=Theobroma cacao GN=TCM_047062 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 80/105 (76.19%), Postives = 88/105 (83.81%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KK CPVNFEFLNYTIITS+CKGP+YPP  CCSA K+FACPY E +NDLT DCASTMFSYI
Sbjct: 45  KKACPVNFEFLNYTIITSRCKGPQYPPDQCCSAFKDFACPYAEQINDLTTDCASTMFSYI 104

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPS 499
           NLYGKYPPGLF+SEC+EGKEGL CPAL PS+S + S     S PS
Sbjct: 105 NLYGKYPPGLFASECREGKEGLACPALAPSSSENASGSQLISNPS 149

Query: 500  559
           
Sbjct: 165  149

Query: 560  619
           
Sbjct: 225  149

Query: 620  679
           
Sbjct: 285  149

Query: 680  695
           
Sbjct: 345  149

[Close]

BLAST of CU101992 vs. TrEMBL
Match: A0A0B2QLE4_GLYSO (GPI-anchored protein LORELEI-like protein OS=Glycine soja GN=glysoja_033255 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 82/105 (78.10%), Postives = 87/105 (82.86%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KK+C VNFEFLNYTIITSKCKGP YPPK CC A KEFACPYV+ LNDLTN+CASTMFSYI
Sbjct: 28  KKSCSVNFEFLNYTIITSKCKGPHYPPKECCGAFKEFACPYVDVLNDLTNECASTMFSYI 87

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPS 499
           NLYGKYPPGLF+SEC EGK GL CPALPPS SAD +       PS
Sbjct: 88  NLYGKYPPGLFASECHEGKLGLACPALPPSASADDTANQVVHCPS 132

Query: 500  559
           
Sbjct: 148  132

Query: 560  619
           
Sbjct: 208  132

Query: 620  679
           
Sbjct: 268  132

Query: 680  695
           
Sbjct: 328  132

[Close]

BLAST of CU101992 vs. TrEMBL
Match: Q9FKT1_ARATH (LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 OS=Arabidopsis thaliana GN=LLG1 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 78/105 (74.29%), Postives = 93/105 (88.57%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KKTCPVNFEF+NYTIITSKCKGP+YPPK CC A K+FACPY + LNDL++DCA+TMFSYI
Sbjct: 46  KKTCPVNFEFMNYTIITSKCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYI 105

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPA---LPPSTSADLSWGSKTS 499
           NLYGKYPPGLF+++CKEGKEGLECPA   LPP TSA+++  + +S
Sbjct: 106 NLYGKYPPGLFANQCKEGKEGLECPAGSQLPPETSAEVNAATTSS 150

Query: 500  559
           
Sbjct: 166  150

Query: 560  619
           
Sbjct: 226  150

Query: 620  679
           
Sbjct: 286  150

Query: 680  686
           
Sbjct: 346  150

[Close]

BLAST of CU101992 vs. NCBI nr
Match: gi|449443998|ref|XP_004139762.1| (PREDICTED: GPI-anchored protein LORELEI [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 5.0e-58
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KK CPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI
Sbjct: 49  KKACPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 108

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPSYS 499
           NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPSYS
Sbjct: 109 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPSYS 155

Query: 500  559
           
Sbjct: 169  155

Query: 560  619
           
Sbjct: 229  155

Query: 620  679
           
Sbjct: 289  155

Query: 680  701
           
Sbjct: 349  155

[Close]

BLAST of CU101992 vs. NCBI nr
Match: gi|659093945|ref|XP_008447799.1| (PREDICTED: GPI-anchored protein LORELEI-like [Cucumis melo])

HSP 1 Score: 227.3 bits (578), Expect = 4.6e-56
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KK CPVNFEFLNYTIITSKCKGPRYPPK CCSALKEFACPYVED+NDLTNDCASTMFSYI
Sbjct: 49  KKACPVNFEFLNYTIITSKCKGPRYPPKLCCSALKEFACPYVEDINDLTNDCASTMFSYI 108

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPSYS 499
           NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSW SKTSLPSYS
Sbjct: 109 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWCSKTSLPSYS 155

Query: 500  559
           
Sbjct: 169  155

Query: 560  619
           
Sbjct: 229  155

Query: 620  679
           
Sbjct: 289  155

Query: 680  701
           
Sbjct: 349  155

[Close]

BLAST of CU101992 vs. NCBI nr
Match: gi|15241141|ref|NP_200428.1| (LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 [Arabidopsis thaliana])

HSP 1 Score: 179.9 bits (455), Expect = 8.5e-42
Identity = 78/105 (74.29%), Postives = 93/105 (88.57%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KKTCPVNFEF+NYTIITSKCKGP+YPPK CC A K+FACPY + LNDL++DCA+TMFSYI
Sbjct: 46  KKTCPVNFEFMNYTIITSKCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYI 105

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPA---LPPSTSADLSWGSKTS 499
           NLYGKYPPGLF+++CKEGKEGLECPA   LPP TSA+++  + +S
Sbjct: 106 NLYGKYPPGLFANQCKEGKEGLECPAGSQLPPETSAEVNAATTSS 150

Query: 500  559
           
Sbjct: 166  150

Query: 560  619
           
Sbjct: 226  150

Query: 620  679
           
Sbjct: 286  150

Query: 680  686
           
Sbjct: 346  150

[Close]

BLAST of CU101992 vs. NCBI nr
Match: gi|590604745|ref|XP_007020320.1| (Lorelei-like-gpi-anchored protein 1 [Theobroma cacao])

HSP 1 Score: 179.9 bits (455), Expect = 8.5e-42
Identity = 80/105 (76.19%), Postives = 88/105 (83.81%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KK CPVNFEFLNYTIITS+CKGP+YPP  CCSA K+FACPY E +NDLT DCASTMFSYI
Sbjct: 45  KKACPVNFEFLNYTIITSRCKGPQYPPDQCCSAFKDFACPYAEQINDLTTDCASTMFSYI 104

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPS 499
           NLYGKYPPGLF+SEC+EGKEGL CPAL PS+S + S     S PS
Sbjct: 105 NLYGKYPPGLFASECREGKEGLACPALAPSSSENASGSQLISNPS 149

Query: 500  559
           
Sbjct: 165  149

Query: 560  619
           
Sbjct: 225  149

Query: 620  679
           
Sbjct: 285  149

Query: 680  695
           
Sbjct: 345  149

[Close]

BLAST of CU101992 vs. NCBI nr
Match: gi|388498648|gb|AFK37390.1| (unknown [Lotus japonicus])

HSP 1 Score: 179.9 bits (455), Expect = 8.5e-42
Identity = 82/105 (78.10%), Postives = 86/105 (81.90%), Query Frame = 2


Query: 380 KKTCPVNFEFLNYTIITSKCKGPRYPPKFCCSALKEFACPYVEDLNDLTNDCASTMFSYI 439
           KK C VNFEFLNYTIITSKCKGP YPPK CC A KEFACPYV+ LNDLTNDCASTMFSYI
Sbjct: 53  KKGCSVNFEFLNYTIITSKCKGPSYPPKDCCGAFKEFACPYVDVLNDLTNDCASTMFSYI 112

Query: 440 NLYGKYPPGLFSSECKEGKEGLECPALPPSTSADLSWGSKTSLPS 499
           NLYGKYPPGLF+ EC+EGKEGL CPALPPS  AD +       PS
Sbjct: 113 NLYGKYPPGLFAHECREGKEGLACPALPPSALADDTSSQVVHFPS 157

Query: 500  559
           
Sbjct: 173  157

Query: 560  619
           
Sbjct: 233  157

Query: 620  679
           
Sbjct: 293  157

Query: 680  695
           
Sbjct: 353  157

The following BLAST results are available for this feature:

BLAST of CU101992 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRE_ARATH	1.6e-32	56.60	GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1	[more]

BLAST of CU101992 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K362_CUCSA	7.7e-58	99.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1	[more]
A0A0A0K362_CUCSA	1.5e+00	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G186190 PE=4 SV=1	[more]
A0A061F3D9_THECC	1.3e-41	76.19	Lorelei-like-gpi-anchored protein 1 OS=Theobroma cacao GN=TCM_047062 PE=4 SV=1	[more]
A0A0B2QLE4_GLYSO	1.7e-41	78.10	GPI-anchored protein LORELEI-like protein OS=Glycine soja GN=glysoja_033255 PE=4...	[more]
Q9FKT1_ARATH	1.7e-41	74.29	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 OS=Arabidopsis thaliana GN=LLG1 PE=2 SV=1	[more]

BLAST of CU101992 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443998\|ref\|XP_004139762.1\|	5.0e-58	99.07	PREDICTED: GPI-anchored protein LORELEI [Cucumis sativus]	[more]
gi\|659093945\|ref\|XP_008447799.1\|	4.6e-56	96.26	PREDICTED: GPI-anchored protein LORELEI-like [Cucumis melo]	[more]
gi\|15241141\|ref\|NP_200428.1\|	8.5e-42	74.29	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 [Arabidopsis thaliana]	[more]
gi\|590604745\|ref\|XP_007020320.1\|	8.5e-42	76.19	Lorelei-like-gpi-anchored protein 1 [Theobroma cacao]	[more]
gi\|388498648\|gb\|AFK37390.1\|	8.5e-42	78.10	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G186190	Csa7G186190	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K2N4J	FKNP3UI02K2N4J	EST
FKNP3UI02KM0D4	FKNP3UI02KM0D4	EST
FKNP3UI02LVIY2	FKNP3UI02LVIY2	EST
FKNP3UI02LZ1H1	FKNP3UI02LZ1H1	EST
FKNP3UI02M1VAY	FKNP3UI02M1VAY	EST
FKNP3UI02MXPQX	FKNP3UI02MXPQX	EST
FKNP3UI02MYMVJ	FKNP3UI02MYMVJ	EST
FKNP3UI02N2AS8	FKNP3UI02N2AS8	EST
FKNP3UI02N8FVO	FKNP3UI02N8FVO	EST
FKNP3UI02NEEGJ	FKNP3UI02NEEGJ	EST
FKNP3UI02NPX6B	FKNP3UI02NPX6B	EST
FKNP3UI02NVUK3	FKNP3UI02NVUK3	EST
FKNP3UI02OT8TN	FKNP3UI02OT8TN	EST
G0002294	G0002294	EST
G0105531	G0105531	EST
H0091935	H0091935	EST
H0107071	H0107071	EST
H0111996	H0111996	EST
csa01-3ms2-c06	csa01-3ms2-c06	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31533	FAMILY NOT NAMED	coord: 15..137 score: 6.1