CU101031 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU101031
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPeptidyl-prolyl cis-trans isomerase
LocationChr4 : 23109186 .. 23109418 (+)
Sequence length234
The following sequences are available for this feature:

transcribed_cluster sequence

GGACAAGCTCTGCGTAGTTCAACCGCCATGGCAGTGTCCGTTCCCAACACCTTGGATTCTTCTCCCATTCATCGCCTTCTTCCTCAAATTCGTTCTCACTCCTCGTCTGACCAAAGAGAGAATGCATCCCAACAAGAGTTTTCTCTGCCAATTTCGAGAAGGTCTGCAATTTTGATCTCTTCGCTACCTTTCACTCTCGTTTCTGTATCTCCGTCAAAGGCAAGAGAAAGAAGG
BLAST of CU101031 vs. TrEMBL
Match: A0A0A0L0S6_CUCSA (Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_4G664330 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-17
Identity = 52/69 (75.36%), Postives = 53/69 (76.81%), Query Frame = 1

Query: 28  MAVSVPNTLDSSPIHRLLPQIRSHSSSDQRENASQQEFXXXXXXXXXXXXXXXXFTLVSV 87
           MAVSVPNTLDSSPIHRLLPQIRSHSSS+QRENASQQEF                FTLVSV
Sbjct: 1   MAVSVPNTLDSSPIHRLLPQIRSHSSSNQRENASQQEFSLPISRRSAILISSLPFTLVSV 60

Query: 88  SPSKARERR 147
           SPSKARERR
Sbjct: 61  SPSKARERR 69

Query: 148 207
           
Sbjct: 121 69

Query: 208 235
           
Sbjct: 181 69

BLAST of CU101031 vs. NCBI nr
Match: gi|449455631|ref|XP_004145556.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-17
Identity = 52/69 (75.36%), Postives = 53/69 (76.81%), Query Frame = 1

Query: 28  MAVSVPNTLDSSPIHRLLPQIRSHSSSDQRENASQQEFXXXXXXXXXXXXXXXXFTLVSV 87
           MAVSVPNTLDSSPIHRLLPQIRSHSSS+QRENASQQEF                FTLVSV
Sbjct: 1   MAVSVPNTLDSSPIHRLLPQIRSHSSSNQRENASQQEFSLPISRRSAILISSLPFTLVSV 60

Query: 88  SPSKARERR 147
           SPSKARERR
Sbjct: 61  SPSKARERR 69

Query: 148 207
           
Sbjct: 121 69

Query: 208 235
           
Sbjct: 181 69

BLAST of CU101031 vs. NCBI nr
Match: gi|659105087|ref|XP_008453010.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 48/69 (69.57%), Postives = 50/69 (72.46%), Query Frame = 1

Query: 28  MAVSVPNTLDSSPIHRLLPQIRSHSSSDQRENASQQEFXXXXXXXXXXXXXXXXFTLVSV 87
           MAVS+PNTLDS PIHRLLPQIRS SS +QRENASQQEF                FTLVSV
Sbjct: 1   MAVSMPNTLDSCPIHRLLPQIRSQSSPNQRENASQQEFSLPISRRSAILISSLPFTLVSV 60

Query: 88  SPSKARERR 147
           SPSKARERR
Sbjct: 61  SPSKARERR 69

Query: 148 207
           
Sbjct: 121 69

Query: 208 235
           
Sbjct: 181 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L0S6_CUCSA1.0e-1775.36Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_4G664330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449455631|ref|XP_004145556.1|4.3e-1775.36PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic [Cucumis sa... [more]
gi|659105087|ref|XP_008453010.1|1.2e-1469.57PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic [Cucumis me... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G664330Csa4G664330gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02M7D9PFKNP3UI02M7D9PEST
FKNP3UI02MAL1DFKNP3UI02MAL1DEST
FKNP3UI02MZ2UIFKNP3UI02MZ2UIEST
FKNP3UI02OBZB2FKNP3UI02OBZB2EST
H0036303H0036303EST
H0058148H0058148EST
H0068260H0068260EST