CU098304 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU098304
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Cell division cycle-associated 7-like protein
Location	Chr1 : 4595487 .. 4595986 (-)
Sequence length	251

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGGCAGAAGAAGCTATGTGGTGAAGAAGATTGCAGGAGATGTGGCGATTTTGATATGGATGAACCATGTATCGGAAAAAACCGATTGCTCTGTTTGTCATTCCACCAATGGTGTCTTCTGCCGAGCTTGTCTGAAAGTCAGATATGGTGAAGAAATGGAAGAAGTGATTAAGAACAAGAAATGGATGTGTCCTCATTGTGTGGAGGAGAAAGGATCAACTCATATTGGATATGCAACAGTTCATTGTGCTT

Library


Library category	ESTs
gynoecious flower library	2
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU098304 vs. TrEMBL
Match: A0A0A0LQX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042940 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG
Sbjct: 182 KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 227

Query: 137  196
           
Sbjct: 242  227

Query: 197  215
           
Sbjct: 302  227

[Close]

BLAST of CU098304 vs. TrEMBL
Match: A0A0A0LQX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042940 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-11
Identity = 46/89 (51.69%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 1   RQKKLCGEEDCRRCGDFDMDEPCIGKNRL-LCLS----FHQWCLLPSLSESQIW*RNGRS 60
           RQKKLCGEEDCRRCGDFDMDEPCIGK    +C S    F + CL     E          
Sbjct: 157 RQKKLCGEEDCRRCGDFDMDEPCIGKTDCSVCHSTNGVFCRACLKVRYGEEM------EE 216

Query: 61  D*EQEMDVSSLCGGER-INSYWICNSSLC 120
             + +  +   C  E+ INSYWICNSSLC
Sbjct: 217 VIKNKKWMCPHCVEEKGINSYWICNSSLC 239

Query: 121  180
           
Sbjct: 277  239

Query: 181  240
           
Sbjct: 337  239

Query: 241  250
           
Sbjct: 397  239

HSP 2 Score: 101.3 bits (251), Expect = 5.9e-19
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCSVCHSTNGVFCRACLKVRYGEEMEEV +NK+WMCPHC+EEKG
Sbjct: 208 KTDCSVCHSTNGVFCRACLKVRYGEEMEEVRENKEWMCPHCIEEKG 253

Query: 137  196
           
Sbjct: 268  253

Query: 197  215
           
Sbjct: 328  253

[Close]

BLAST of CU098304 vs. TrEMBL
Match: B9SU83_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0570410 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-07
Identity = 36/88 (40.91%), Postives = 45/88 (51.14%), Query Frame = 1


Query: 1   RQKKLCGEEDCRRCGDFDMDEPCIGKNRL-LCLS----FHQWCLLPSLSESQIW*RNGRS 60
           RQKKLCGEEDC+RC   D D+PC+GK    +C S    F + CL     E     R  + 
Sbjct: 183 RQKKLCGEEDCKRCSSLDPDQPCMGKTDCSVCHSTNGVFCRACLKVRYGEEMEEVRENK- 242

Query: 61  D*EQEMDVSSLCGGERINSYWICNSSLC 120
               E         + IN +WICNSS+C
Sbjct: 243 ----EWMCPHCIEEKGINPFWICNSSIC 265

Query: 121  180
           
Sbjct: 303  265

Query: 181  240
           
Sbjct: 363  265

Query: 241  250
           
Sbjct: 423  265

HSP 2 Score: 99.4 bits (246), Expect = 2.2e-18
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCSVCHS++GVFCR CLKVRYGEEMEEVI+NK+WMCPHC+EEKG
Sbjct: 189 KTDCSVCHSSHGVFCRGCLKVRYGEEMEEVIRNKEWMCPHCIEEKG 234

Query: 137  196
           
Sbjct: 249  234

Query: 197  215
           
Sbjct: 309  234

[Close]

BLAST of CU098304 vs. TrEMBL
Match: W9QWM5_9ROSA (Chaperone protein DnaJ OS=Morus notabilis GN=L484_019309 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-07
Identity = 39/87 (44.83%), Postives = 47/87 (54.02%), Query Frame = 1


Query: 1   RQKKLCGEEDCRRCGDFDMDEPCIGKNRL-LCLSFH----QWCLLPSLSES-QIW*RNGR 60
           RQKKLCGEEDC+RC + DMDEPCIGK    +C S H    + CL     E  +   RN  
Sbjct: 164 RQKKLCGEEDCKRCSNLDMDEPCIGKTDCSVCHSSHGVFCRGCLKVRYGEEMEEVIRN-- 223

Query: 61  SD*EQEMDVSSLCGGERINSYWICNSS 120
               +E         + I SYWICNS+
Sbjct: 224 ----KEWMCPHCIEEKGIKSYWICNSA 244

Query: 121  180
           
Sbjct: 284  244

Query: 181  240
           
Sbjct: 344  244

Query: 241  244
           
Sbjct: 404  244

HSP 2 Score: 98.2 bits (243), Expect = 5.0e-18
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCS CHS+NGVFCRACLKVRYGEEMEEV +NK+WMCPHC+EEKG
Sbjct: 205 KTDCSACHSSNGVFCRACLKVRYGEEMEEVRENKEWMCPHCIEEKG 250

Query: 137  196
           
Sbjct: 265  250

Query: 197  215
           
Sbjct: 325  250

[Close]

BLAST of CU098304 vs. TrEMBL
Match: G7KQ98_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_6g070950 PE=4 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 37/88 (42.05%), Postives = 46/88 (52.27%), Query Frame = 1


Query: 1   RQKKLCGEEDCRRCGDFDMDEPCIGKNRL-LCLS----FHQWCLLPSLSESQIW*RNGRS 60
           RQKKLCGEEDC+RCG+ D++EPC+GK     C S    F + CL     E     R  + 
Sbjct: 180 RQKKLCGEEDCKRCGNCDVNEPCLGKTDCSACHSSNGVFCRACLKVRYGEEMEEVRENK- 239

Query: 61  D*EQEMDVSSLCGGERINSYWICNSSLC 120
               E         + I  YWICNSS+C
Sbjct: 240 ----EWMCPHCIEEKGIKPYWICNSSIC 262

Query: 121  180
           
Sbjct: 300  262

Query: 181  240
           
Sbjct: 360  262

Query: 241  250
           
Sbjct: 420  262

HSP 2 Score: 97.8 bits (242), Expect = 6.5e-18
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCS+CHS+NGVFCR CLKVRYGEEMEEV +NKKW+CPHC+EEKG
Sbjct: 184 KTDCSICHSSNGVFCRGCLKVRYGEEMEEVRENKKWVCPHCIEEKG 229

Query: 137  196
           
Sbjct: 244  229

Query: 197  215
           
Sbjct: 304  229

[Close]

BLAST of CU098304 vs. NCBI nr
Match: gi|449439477|ref|XP_004137512.1| (PREDICTED: cell division cycle-associated protein 7 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 6.9e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG
Sbjct: 182 KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 227

Query: 137  196
           
Sbjct: 242  227

Query: 197  215
           
Sbjct: 302  227

[Close]

BLAST of CU098304 vs. NCBI nr
Match: gi|659066900|ref|XP_008466442.1| (PREDICTED: cell division cycle-associated protein 7-like [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCSVCHS+NGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG
Sbjct: 182 KTDCSVCHSSNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 227

Query: 137  196
           
Sbjct: 242  227

Query: 197  215
           
Sbjct: 302  227

[Close]

BLAST of CU098304 vs. NCBI nr
Match: gi|223530964|gb|EEF32821.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-19
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCSVCHSTNGVFCRACLKVRYGEEMEEV +NK+WMCPHC+EEKG
Sbjct: 208 KTDCSVCHSTNGVFCRACLKVRYGEEMEEVRENKEWMCPHCIEEKG 253

Query: 137  196
           
Sbjct: 268  253

Query: 197  215
           
Sbjct: 328  253

[Close]

BLAST of CU098304 vs. NCBI nr
Match: gi|1000945921|ref|XP_015581102.1| (PREDICTED: cell division cycle-associated 7-like protein isoform X1 [Ricinus communis])

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-19
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCSVCHSTNGVFCRACLKVRYGEEMEEV +NK+WMCPHC+EEKG
Sbjct: 197 KTDCSVCHSTNGVFCRACLKVRYGEEMEEVRENKEWMCPHCIEEKG 242

Query: 137  196
           
Sbjct: 257  242

Query: 197  215
           
Sbjct: 317  242

[Close]

BLAST of CU098304 vs. NCBI nr
Match: gi|1000945923|ref|XP_015581103.1| (PREDICTED: cell division cycle-associated 7-like protein isoform X2 [Ricinus communis])

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-19
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2


Query: 77  KTDCSVCHSTNGVFCRACLKVRYGEEMEEVIKNKKWMCPHCVEEKG 136
           KTDCSVCHSTNGVFCRACLKVRYGEEMEEV +NK+WMCPHC+EEKG
Sbjct: 197 KTDCSVCHSTNGVFCRACLKVRYGEEMEEVRENKEWMCPHCIEEKG 242

Query: 137  196
           
Sbjct: 257  242

Query: 197  215
           
Sbjct: 317  242

The following BLAST results are available for this feature:

BLAST of CU098304 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQX9_CUCSA	8.2e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042940 PE=4 SV=1	[more]
A0A0A0LQX9_CUCSA	1.2e-11	51.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042940 PE=4 SV=1	[more]
B9SU83_RICCO	6.7e-07	40.91	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0570410 PE=4 SV=1	[more]
W9QWM5_9ROSA	5.1e-07	44.83	Chaperone protein DnaJ OS=Morus notabilis GN=L484_019309 PE=3 SV=1	[more]
G7KQ98_MEDTR	3.0e-07	42.05	Uncharacterized protein OS=Medicago truncatula GN=MTR_6g070950 PE=4 SV=2	[more]

BLAST of CU098304 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439477\|ref\|XP_004137512.1\|	6.9e-21	100.00	PREDICTED: cell division cycle-associated protein 7 [Cucumis sativus]	[more]
gi\|659066900\|ref\|XP_008466442.1\|	2.0e-20	97.83	PREDICTED: cell division cycle-associated protein 7-like [Cucumis melo]	[more]
gi\|223530964\|gb\|EEF32821.1\|	4.9e-19	91.30	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000945921\|ref\|XP_015581102.1\|	4.9e-19	91.30	PREDICTED: cell division cycle-associated 7-like protein isoform X1 [Ricinus com...	[more]
gi\|1000945923\|ref\|XP_015581103.1\|	4.9e-19	91.30	PREDICTED: cell division cycle-associated 7-like protein isoform X2 [Ricinus com...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR018866	Znf-4CXXC_R1

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G042940	Csa1G042940	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0100711	G0100711	EST
G0206768	G0206768	EST
H0157656	H0157656	EST
H0164764	H0164764	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 29..73 score: 3.
IPR018866	Zinc-finger domain of monoamine-oxidase A repressor R1	PFAM	PF10497	zf-4CXXC_R1	coord: 23..70 score: 3.5
None	No IPR available	PANTHER	PTHR31169	FAMILY NOT NAMED	coord: 26..68 score: 6.1
None	No IPR available	PANTHER	PTHR31169:SF6	SUBFAMILY NOT NAMED	coord: 26..68 score: 6.1