CU097423 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU097423
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	DNA polymerase
Location	Chr7 : 5372738 .. 5373374 (-)
Sequence length	640

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGACGGCAGTATGTAATCAAGCCCTTGGTTCGTAATTCCTTTTTATATAAAGGTCTATAAAGTCTCTAGAAATAGAGAGAAGGCCGGTAAATTATTCTATCTATTTAGAGATTCATTGCAATTACTTCCAAATTCACTATTAGACTTGGGTATGACTCTATGTCCCGAGTTAGGGGGTCAAAGGTTATATTGACCATAAGGATGTTGTAGTGTCTGATCTAGAGGATAGAAGGGAGGAGCTGATTTCCTATCTTCGCCAGGATATTCTGATTCTGGGTGGTGTCTTCTTAAAGAGTCAAGAAATCAATTGGGCTAAGTATAAGATTGATATCGTGAGAACAATGACCTTGTCAGGTCTTTCGCTTAAGATCTTCCGAAAAAAGTATTTCGATGATACCTCCTTTCATATATCAATCCCTACACGAAACCAAGACACTTTTATTAGGCGTGGCTATTATGGGGGACATGTGGATGTCTATAAACCTGTAGGGCTAGATCTTGACTATTATGATGTCAATTCACTATATCCCTTTGTTATGAAATCTTATCCAATGCCTTCTTGGTGTCCCCAGTCTGGGTGAATAATTTGTCTGGTGGCGTTGATTTGGATACCTTGTTTGGCTTTATTGAGGCCTATGT

Library


Library category	ESTs
gynoecious flower library	6
hermaphrodite flower library	6

Homology

[Close]

BLAST of CU097423 vs. Swiss-Prot
Match: DPOM_MAIZE (DNA polymerase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 1


Query: 160 YVPS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVR 219
           + P  G KG  DH++V V  L   RE+ ++YL+QDILI   V  +++ I W +Y IDI++
Sbjct: 379 FCPELGGKGSFDHQNVTVDKLPSIREDSLTYLKQDILITAAVMQRAKAIIWEEYGIDILK 438

Query: 220 TMTLSGLSLKIFRKKYF-DDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDV 279
            +T+S L+LKIFR+ Y+ DD    I IP  N+  FIR GYYGGH DVYKP G +L YYDV
Sbjct: 439 VLTISALALKIFRRVYYKDDDDNWIYIPDDNEAQFIREGYYGGHTDVYKPYGENLYYYDV 498

Query: 280 NSLYPFVM 339
           NSLYP  M
Sbjct: 499 NSLYPSSM 506

Query: 340  399
           
Sbjct: 559  506

Query: 400  459
           
Sbjct: 619  506

Query: 460  519
           
Sbjct: 679  506

Query: 520  541
           
Sbjct: 739  506

[Close]

BLAST of CU097423 vs. Swiss-Prot
Match: DPOM_NEUIN (Probable DNA polymerase OS=Neurospora intermedia PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.5e-15
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 1


Query: 178 VKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTMTLSG 237
           ++ Y ++ +   ++  D ++ELI Y   D + L  V +  Q   + K+ ID  +  T+  
Sbjct: 525 IEQYQEYANKFKNNNWDLKKELIKYCEIDTIALYQVLVSFQRKIYEKFMIDCTKYPTIPS 584

Query: 238 LSLKIFRKKYF-DDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSLYPF 297
           L+  IFRKKY  +D   +I     N    I+  Y+GG  ++YKP G+++  YDVNSLYPF
Sbjct: 585 LAFAIFRKKYLVEDMIPNIKSKLHN---IIKLSYFGGICELYKPFGVNIKSYDVNSLYPF 644

Query: 298 VMKSYPMPSWCPQ 357
            MK + MPS  P+
Sbjct: 645 AMKYFKMPSGIPK 654

Query: 358  417
           
Sbjct: 705  654

Query: 418  477
           
Sbjct: 765  654

Query: 478  537
           
Sbjct: 825  654

Query: 538  574
           
Sbjct: 885  654

[Close]

BLAST of CU097423 vs. Swiss-Prot
Match: DPOM_PODAS (Probable DNA polymerase OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 1


Query: 226 DRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTMTLSGLSLKIFRKKYFDDTSF 285
           D R++ + YL +D+L L  +        + +Y + +  ++T++ L+L I+ K+Y  D   
Sbjct: 580 DLRKQTLHYLERDLLSLLEIINTYNHYVYKRYNVQLTESLTIARLALNIYLKRYLGDNLI 639

Query: 286 HISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSLYPFVMKS 345
            + +   +  T I+  YYGG  +VY+P G +L YYDVNSLYPFV K+
Sbjct: 640 PVVL-NNSLFTSIKAAYYGGVAEVYRPYGKNLRYYDVNSLYPFVAKN 685

Query: 346  405
           
Sbjct: 700  685

Query: 406  465
           
Sbjct: 760  685

Query: 466  525
           
Sbjct: 820  685

Query: 526  547
           
Sbjct: 880  685

[Close]

BLAST of CU097423 vs. Swiss-Prot
Match: DPOM_CLAPU (Probable DNA polymerase OS=Claviceps purpurea PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-10
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 1


Query: 208 VVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTMTLSGLSLKIFRKKY 267
           +V D  D ++E + YL  D++ L  V +K  +     + I+     T+S L+ KIF  K+
Sbjct: 564 LVKDDWDFKDETLEYLNLDLISLHQVLVKVNKAINFLFDIEFTSCATVSSLANKIFLSKF 623

Query: 268 FDDTSFHISIPTRNQDTF--IRRGYYGGHVDVYKPVGL-----DLDYYDVNSLYPF 327
           +DD +  I +  ++ D F  I   YYGG V+V+ P+ +        YYDVNSLYPF
Sbjct: 624 YDDKNKAIPL-VKDIDLFNDIHEAYYGGRVEVFNPIIMADSTKSYYYYDVNSLYPF 678

Query: 328  387
           
Sbjct: 684  678

Query: 388  447
           
Sbjct: 744  678

Query: 448  507
           
Sbjct: 804  678

Query: 508  535
           
Sbjct: 864  678

[Close]

BLAST of CU097423 vs. Swiss-Prot
Match: DPOM_AGABT (Probable DNA polymerase (Fragment) OS=Agaricus bitorquis PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 38/134 (28.36%), Postives = 68/134 (50.75%), Query Frame = 1


Query: 178 VKGYIDHKDVVVSDLE---------DRREELISYLRQDILILGGVFLKSQEINWAKYKID 237
           +K Y+D      S L+         + ++E ++YL +DIL L  +  K     + +YK++
Sbjct: 321 IKYYVDENKFNESKLKKYKSLPSILNLKKECLNYLDKDILGLLELMNKVSLTYFNEYKLN 380

Query: 238 IVRTMTLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVY----KPVGLD 297
           I +  TL  ++L IF  +++DD +  I +       FIR  Y+GG+ D++    + +  +
Sbjct: 381 ITKFSTLPSITLNIFGIRFYDDQN-SIKMINGPLSEFIRSSYFGGNSDIFVSGEERLVKN 440

Query: 298 LDYYDVNSLYPFVM 357
             +YD+NS YP+ M
Sbjct: 441 GYHYDMNSQYPYAM 453

Query: 358  417
           
Sbjct: 501  453

Query: 418  477
           
Sbjct: 561  453

Query: 478  537
           
Sbjct: 621  453

Query: 538  541
           
Sbjct: 681  453

[Close]

BLAST of CU097423 vs. TrEMBL
Match: A0A0A0K3F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G081710 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 7.1e-69
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM
Sbjct: 5   PELGVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 64

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL
Sbjct: 65  TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 124

Query: 286 YPFVMKSYPMPSWCP 345
           YPFVMKSYPMPS  P
Sbjct: 125 YPFVMKSYPMPSGVP 139

Query: 346  405
           
Sbjct: 185  139

Query: 406  465
           
Sbjct: 245  139

Query: 466  525
           
Sbjct: 305  139

Query: 526  571
           
Sbjct: 365  139

[Close]

BLAST of CU097423 vs. TrEMBL
Match: A0A0A0K3F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G081710 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 3


Query: 570 PVWVNNLSGGVDLDTLFGFIEAY 629
           PVWVNNLSGGVDLDTLFGFIEAY
Sbjct: 139 PVWVNNLSGGVDLDTLFGFIEAY 161

Query: 630  639
           
Sbjct: 199  161

HSP 2 Score: 204.5 bits (519), Expect = 1.3e-49
Identity = 97/135 (71.85%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  G KG IDH  +VVSDL  +++EL+ YLRQDIL+LGGV  K+QEINW+KY+IDI   M
Sbjct: 151 PELGSKGDIDHDSLVVSDLLMKKDELLKYLRQDILLLGGVMKKAQEINWSKYQIDIEEVM 210

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           T+SGLSLKIFRK YF+D +FHI IPTRNQDTFIR GYYGGHVDVYKP G +L YYDVNSL
Sbjct: 211 TVSGLSLKIFRKHYFNDQTFHIPIPTRNQDTFIRNGYYGGHVDVYKPYGENLYYYDVNSL 270

Query: 286 YPFVMKSYPMPSWCP 345
           YPF+MK+YPMPS  P
Sbjct: 271 YPFIMKNYPMPSGIP 285

Query: 346  405
           
Sbjct: 331  285

Query: 406  465
           
Sbjct: 391  285

Query: 466  525
           
Sbjct: 451  285

Query: 526  571
           
Sbjct: 511  285

[Close]

BLAST of CU097423 vs. TrEMBL
Match: S8EK46_9LAMI (DNA polymerase (Fragment) OS=Genlisea aurea GN=M569_01793 PE=3 SV=1)

HSP 1 Score: 34.3 bits (77), Expect = 2.2e+02
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 3


Query: 570 PVWVNNLSGGVDLDTLFGFIEAY 629
           P+W N+L    DLD+LFGFIEAY
Sbjct: 285 PIWKNHLESS-DLDSLFGFIEAY 306

Query: 630  639
           
Sbjct: 345  306

HSP 2 Score: 167.5 bits (423), Expect = 1.7e-38
Identity = 74/135 (54.81%), Postives = 105/135 (77.78%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  G KG I H+++ V  LE+RR++L+ YL+QDI +LGGV LK+QEI W ++K+DIV+ +
Sbjct: 150 PQLGGKGSIPHEEIQVETLENRRDQLLEYLKQDIRLLGGVMLKAQEIYWTQFKVDIVKCL 209

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           T+S L++KI+R  ++D  SF I +P++N+DTFIRRGYYGGH D+Y P G +L YYDVNSL
Sbjct: 210 TVSSLAMKIYRMSFYDPNSFPIHLPSKNEDTFIRRGYYGGHSDMYIPYGENLYYYDVNSL 269

Query: 286 YPFVMKSYPMPSWCP 345
           YP++MK++ MP   P
Sbjct: 270 YPYIMKTFNMPGGKP 284

Query: 346  405
           
Sbjct: 330  284

Query: 406  465
           
Sbjct: 390  284

Query: 466  525
           
Sbjct: 450  284

Query: 526  571
           
Sbjct: 510  284

[Close]

BLAST of CU097423 vs. TrEMBL
Match: Q5U692_BETVU (Orf774 protein OS=Beta vulgaris subsp. vulgaris GN=orf774 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  G KG  DH  + + +++ +R+ +I Y++QDI +LGGV  K+Q+I W  +++D+V  +
Sbjct: 225 PELGNKGSFDHSSMNLENVKKKRDVVIEYMKQDIRLLGGVMQKAQDIYWNLFEVDLVDWI 284

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           T++  +L IFR  +F+D  FHI IP RN+DTFIRRGYYGGH D Y P G +L YYDVNSL
Sbjct: 285 TVASQALGIFRMNFFNDMDFHIHIPNRNEDTFIRRGYYGGHADAYIPKGTNLYYYDVNSL 344

Query: 286 YPFVMKSYPMPSWCP 345
           YPF+MK YPMPS  P
Sbjct: 345 YPFIMKEYPMPSGKP 359

Query: 346  405
           
Sbjct: 405  359

Query: 406  465
           
Sbjct: 465  359

Query: 466  525
           
Sbjct: 525  359

Query: 526  571
           
Sbjct: 585  359

[Close]

BLAST of CU097423 vs. TrEMBL
Match: Q5U692_BETVU (Orf774 protein OS=Beta vulgaris subsp. vulgaris GN=orf774 PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 7.0e+00
Identity = 17/23 (73.91%), Postives = 21/23 (91.30%), Query Frame = 3


Query: 570 PVWVNNLSGGVDLDTLFGFIEAY 629
           PVW +NL GG+DLD+L+GFIEAY
Sbjct: 359 PVWASNL-GGMDLDSLYGFIEAY 380

Query: 630  639
           
Sbjct: 419  380

HSP 2 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  G KG  DH  + + +++ +R+ +I Y++QDI +LGGV  K+Q+I W  +++D+V  +
Sbjct: 225 PELGNKGSFDHSSMNLENVKKKRDVVIEYMKQDIRLLGGVMQKAQDIYWNLFEVDLVDWI 284

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           T++  +L IFR  +F+D  FHI IP RN+DTFIRRGYYGGH D Y P G +L YYDVNSL
Sbjct: 285 TVASQALGIFRMNFFNDMDFHIHIPNRNEDTFIRRGYYGGHADAYIPKGTNLYYYDVNSL 344

Query: 286 YPFVMKSYPMPSWCP 345
           YPF+MK YPMPS  P
Sbjct: 345 YPFIMKEYPMPSGKP 359

Query: 346  405
           
Sbjct: 405  359

Query: 406  465
           
Sbjct: 465  359

Query: 466  525
           
Sbjct: 525  359

Query: 526  571
           
Sbjct: 585  359

[Close]

BLAST of CU097423 vs. NCBI nr
Match: gi|700188760|gb|KGN43993.1| (hypothetical protein Csa_7G081710 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 5.4e-70
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM
Sbjct: 5   PELGVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 64

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL
Sbjct: 65  TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 124

Query: 286 YPFVMKSYPMPSWCP 345
           YPFVMKSYPMPS  P
Sbjct: 125 YPFVMKSYPMPSGVP 139

Query: 346  405
           
Sbjct: 185  139

Query: 406  465
           
Sbjct: 245  139

Query: 466  525
           
Sbjct: 305  139

Query: 526  571
           
Sbjct: 365  139

[Close]

BLAST of CU097423 vs. NCBI nr
Match: gi|527207786|gb|EPS72962.1| (hypothetical protein M569_01793, partial [Genlisea aurea])

HSP 1 Score: 208.8 bits (530), Expect = 9.6e-51
Identity = 97/135 (71.85%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  G KG IDH  +VVSDL  +++EL+ YLRQDIL+LGGV  K+QEINW+KY+IDI   M
Sbjct: 151 PELGSKGDIDHDSLVVSDLLMKKDELLKYLRQDILLLGGVMKKAQEINWSKYQIDIEEVM 210

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           T+SGLSLKIFRK YF+D +FHI IPTRNQDTFIR GYYGGHVDVYKP G +L YYDVNSL
Sbjct: 211 TVSGLSLKIFRKHYFNDQTFHIPIPTRNQDTFIRNGYYGGHVDVYKPYGENLYYYDVNSL 270

Query: 286 YPFVMKSYPMPSWCP 345
           YPF+MK+YPMPS  P
Sbjct: 271 YPFIMKNYPMPSGIP 285

Query: 346  405
           
Sbjct: 331  285

Query: 406  465
           
Sbjct: 391  285

Query: 466  525
           
Sbjct: 451  285

Query: 526  571
           
Sbjct: 511  285

[Close]

BLAST of CU097423 vs. NCBI nr
Match: gi|973603353|gb|KUM46512.1| (DNA polymerase (mitochondrion) [Picea glauca])

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 74/135 (54.81%), Postives = 105/135 (77.78%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  G KG I H+++ V  LE+RR++L+ YL+QDI +LGGV LK+QEI W ++K+DIV+ +
Sbjct: 150 PQLGGKGSIPHEEIQVETLENRRDQLLEYLKQDIRLLGGVMLKAQEIYWTQFKVDIVKCL 209

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           T+S L++KI+R  ++D  SF I +P++N+DTFIRRGYYGGH D+Y P G +L YYDVNSL
Sbjct: 210 TVSSLAMKIYRMSFYDPNSFPIHLPSKNEDTFIRRGYYGGHSDMYIPYGENLYYYDVNSL 269

Query: 286 YPFVMKSYPMPSWCP 345
           YP++MK++ MP   P
Sbjct: 270 YPYIMKTFNMPGGKP 284

Query: 346  405
           
Sbjct: 330  284

Query: 406  465
           
Sbjct: 390  284

Query: 466  525
           
Sbjct: 450  284

Query: 526  571
           
Sbjct: 510  284

[Close]

BLAST of CU097423 vs. NCBI nr
Match: gi|9838405|ref|NP_064018.1| (orf409 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  G KG  DH  + + +++ +R+ +I Y++QDI +LGGV  K+Q+I W  +++D+V  +
Sbjct: 225 PELGNKGSFDHSSMNLENVKKKRDVVIEYMKQDIRLLGGVMQKAQDIYWNLFEVDLVDWI 284

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           T++  +L IFR  +F+D  FHI IP RN+DTFIRRGYYGGH D Y P G +L YYDVNSL
Sbjct: 285 TVASQALGIFRMNFFNDMDFHIHIPNRNEDTFIRRGYYGGHADAYIPKGTNLYYYDVNSL 344

Query: 286 YPFVMKSYPMPSWCP 345
           YPF+MK YPMPS  P
Sbjct: 345 YPFIMKEYPMPSGKP 359

Query: 346  405
           
Sbjct: 405  359

Query: 406  465
           
Sbjct: 465  359

Query: 466  525
           
Sbjct: 525  359

Query: 526  571
           
Sbjct: 585  359

[Close]

BLAST of CU097423 vs. NCBI nr
Match: gi|54606795|dbj|BAD66818.1| (orf774 (mitochondrion) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 1


Query: 166 PS*GVKGYIDHKDVVVSDLEDRREELISYLRQDILILGGVFLKSQEINWAKYKIDIVRTM 225
           P  G KG  DH  + + +++ +R+ +I Y++QDI +LGGV  K+Q+I W  +++D+V  +
Sbjct: 225 PELGNKGSFDHSSMNLENVKKKRDVVIEYMKQDIRLLGGVMQKAQDIYWNLFEVDLVDWI 284

Query: 226 TLSGLSLKIFRKKYFDDTSFHISIPTRNQDTFIRRGYYGGHVDVYKPVGLDLDYYDVNSL 285
           T++  +L IFR  +F+D  FHI IP RN+DTFIRRGYYGGH D Y P G +L YYDVNSL
Sbjct: 285 TVASQALGIFRMNFFNDMDFHIHIPNRNEDTFIRRGYYGGHADAYIPKGTNLYYYDVNSL 344

Query: 286 YPFVMKSYPMPSWCP 345
           YPF+MK YPMPS  P
Sbjct: 345 YPFIMKEYPMPSGKP 359

Query: 346  405
           
Sbjct: 405  359

Query: 406  465
           
Sbjct: 465  359

Query: 466  525
           
Sbjct: 525  359

Query: 526  571
           
Sbjct: 585  359

The following BLAST results are available for this feature:

BLAST of CU097423 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DPOM_MAIZE	1.2e-29	51.56	DNA polymerase OS=Zea mays PE=3 SV=1	[more]
DPOM_NEUIN	6.5e-15	35.34	Probable DNA polymerase OS=Neurospora intermedia PE=3 SV=1	[more]
DPOM_PODAS	1.2e-13	35.51	Probable DNA polymerase OS=Podospora anserina PE=3 SV=1	[more]
DPOM_CLAPU	6.3e-10	35.34	Probable DNA polymerase OS=Claviceps purpurea PE=3 SV=1	[more]
DPOM_AGABT	1.1e-06	28.36	Probable DNA polymerase (Fragment) OS=Agaricus bitorquis PE=3 SV=1	[more]

BLAST of CU097423 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3F4_CUCSA	7.1e-69	97.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G081710 PE=4 SV=1	[more]
A0A0A0K3F4_CUCSA	6.1e-04	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G081710 PE=4 SV=1	[more]
S8EK46_9LAMI	2.2e+02	65.22	DNA polymerase (Fragment) OS=Genlisea aurea GN=M569_01793 PE=3 SV=1	[more]
Q5U692_BETVU	1.4e-35	52.59	Orf774 protein OS=Beta vulgaris subsp. vulgaris GN=orf774 PE=4 SV=1	[more]
Q5U692_BETVU	7.0e+00	73.91	Orf774 protein OS=Beta vulgaris subsp. vulgaris GN=orf774 PE=4 SV=1	[more]

BLAST of CU097423 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188760\|gb\|KGN43993.1\|	5.4e-70	97.04	hypothetical protein Csa_7G081710 [Cucumis sativus]	[more]
gi\|527207786\|gb\|EPS72962.1\|	9.6e-51	71.85	hypothetical protein M569_01793, partial [Genlisea aurea]	[more]
gi\|973603353\|gb\|KUM46512.1\|	1.3e-39	54.81	DNA polymerase (mitochondrion) [Picea glauca]	[more]
gi\|9838405\|ref\|NP_064018.1\|	1.0e-36	52.59	orf409 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]	[more]
gi\|54606795\|dbj\|BAD66818.1\|	1.0e-36	52.59	orf774 (mitochondrion) [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004868	DNA-dir_DNA_pol_B_mt/vir
IPR023211	DNA_pol_palm_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003677	DNA binding
GO:0003887	DNA-directed DNA polymerase activity
GO:0008408	3'-5' exonuclease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G081710	Csa7G081710	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0033050	G0033050	EST
G0036126	G0036126	EST
G0048650	G0048650	EST
G0074492	G0074492	EST
G0124859	G0124859	EST
G0147916	G0147916	EST
H0007031	H0007031	EST
H0059364	H0059364	EST
H0121118	H0121118	EST
H0135734	H0135734	EST
H0156856	H0156856	EST
H0160016	H0160016	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004868	DNA-directed DNA polymerase, family B, mitochondria/virus	PFAM	PF03175	DNA_pol_B_2	coord: 24..136 score: 8.4
IPR023211	DNA polymerase, palm domain	GENE3D	G3DSA:3.90.1600.10		coord: 68..132 score: 1.7
None	No IPR available	PANTHER	PTHR33568	FAMILY NOT NAMED	coord: 18..140 score: 7.8
None	No IPR available	PANTHER	PTHR33568:SF1	SUBFAMILY NOT NAMED	coord: 18..140 score: 7.8
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 62..139 score: 1.21