CU097366 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU097366
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 3151649 .. 3152193 (-)
Sequence length	548

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGAAAACAACAATCATAATATATAAAGGCGAAGATTATTTATAACTGAGACAAAAAGAAAGAAACAATATTTAAAAAAGAAAAAACAATCCATTTAATATATATGAGATAGGTAGATAGGGTAGGGGTTAATTGTTGGGCGGTTTAGGTATAATAGTTGATTGATCTTTCTCTACTTCACCTTCGGTTGTAATGACGGAGGAGACATAACTGAATGCTACGGAGGAATAATTGTCATGATCAGTGGCTGCACTCGTGCTCGTGGTAGTGGTAGTAGTTTTAGTTTTAGTTTTAGTTTGGTCTTGAAACTGCTTCTGGCAAGCTTGACAAGTGATCTCAAGAATGGTTGAGTTTATCTGCTTGATTGCTGCTTGTTTAAGGGCTGTGGCCTTATCTAATTCAGCCTGTGCCTGTTGCCTCATCCTCTTTGCATTCCCGAATTCTTCCTCTGCCATTTCTATTTGCCTCTTTGCCTGCTTCCTTGCTTCCTCCGCATATGCCTTCTCTGCCATCGCCACCCTTAGCTCCTCCCGTGCTTCTTCTCTAACA

Library


Library category	ESTs
gynoecious flower library	10
hermaphrodite flower library	7

Homology

[Close]

BLAST of CU097366 vs. Swiss-Prot
Match: IDD16_ARATH (Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 36/64 (56.25%), Postives = 53/64 (82.81%), Query Frame = -2


Query: 302 AEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQ 361
           AEE R++AKRQIEMAE++F  AKR+R++A+ EL+KA  +++ AIK+IN+T++EITC +C+
Sbjct: 272 AEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREEAIKRINATMMEITCHSCK 331

Query: 362 KQFQ 421
           + FQ
Sbjct: 332 QLFQ 335

Query: 422  481
           
Sbjct: 392  335

Query: 482  494
           
Sbjct: 452  335

[Close]

BLAST of CU097366 vs. Swiss-Prot
Match: IDD14_ARATH (Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.5e-12
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = -2


Query: 302 EEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQK 361
           EEAR++ KRQIE+AE EF  AKR+RQ A+AEL KA   ++ A ++I++T+++ITC  C++
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 362 QFQ 421
            FQ
Sbjct: 375 HFQ 377

Query: 422  481
           
Sbjct: 435  377

Query: 482  491
           
Sbjct: 495  377

[Close]

BLAST of CU097366 vs. TrEMBL
Match: A0A0A0LPV5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G029620 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-34
Identity = 84/116 (72.41%), Postives = 85/116 (73.28%), Query Frame = -2


Query: 155 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 214
           KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ
Sbjct: 331 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 390

Query: 215 ACQKQFQDQXXXXXXXXXXXXXXXXXXDHDNXXXXXXXXXXXXITTEGEVEKDQST 274
           ACQKQFQ +                  DHDN            ITTEGEVEKDQST
Sbjct: 391 ACQKQFQAKTKTKTKTTTTTTSTSAATDHDNYSSVAFSYVSSVITTEGEVEKDQST 446

Query: 275  334
           
Sbjct: 451  446

Query: 335  394
           
Sbjct: 511  446

Query: 395  454
           
Sbjct: 571  446

Query: 455  503
           
Sbjct: 631  446

[Close]

BLAST of CU097366 vs. TrEMBL
Match: A0A0L9VIL0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g046300 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = -2


Query: 302 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 361
           KAYAEEARKQAKRQIE+AE+EF NAKR+RQQAQAELDKA ALK+ A+KQINST+L+ITC 
Sbjct: 361 KAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCH 420

Query: 362 ACQKQFQ 421
           AC++QFQ
Sbjct: 421 ACKQQFQ 427

Query: 422  481
           
Sbjct: 481  427

Query: 482  503
           
Sbjct: 541  427

[Close]

BLAST of CU097366 vs. TrEMBL
Match: A0A151RFD5_CAJCA (Zinc finger protein MAGPIE OS=Cajanus cajan GN=KK1_037443 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = -2


Query: 302 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 361
           KAYAEEARKQAKRQIE+AE+EF NAKR+RQQAQAELDKA ALK+ A+KQINST+L+ITC 
Sbjct: 302 KAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCH 361

Query: 362 ACQKQFQ 421
           AC++QFQ
Sbjct: 362 ACKQQFQ 368

Query: 422  481
           
Sbjct: 422  368

Query: 482  503
           
Sbjct: 482  368

[Close]

BLAST of CU097366 vs. TrEMBL
Match: A0A0S3TCE7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G219800 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = -2


Query: 302 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 361
           KAYAEEARKQAKRQIE+AE+EF NAKR+RQQAQAELDKA ALK+ A+KQINST+L+ITC 
Sbjct: 361 KAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCH 420

Query: 362 ACQKQFQ 421
           AC++QFQ
Sbjct: 421 ACKQQFQ 427

Query: 422  481
           
Sbjct: 481  427

Query: 482  503
           
Sbjct: 541  427

[Close]

BLAST of CU097366 vs. TrEMBL
Match: V7C5Q2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G145900g PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.7e-21
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = -2


Query: 302 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 361
           KAYAEEARKQAKRQIE+AE+EF NAKR+RQQAQAELDKA ALK+ A+KQINST+L+ITC 
Sbjct: 361 KAYAEEARKQAKRQIEVAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCH 420

Query: 362 ACQKQFQ 421
           AC++QFQ
Sbjct: 421 ACKQQFQ 427

Query: 422  481
           
Sbjct: 481  427

Query: 482  503
           
Sbjct: 541  427

[Close]

BLAST of CU097366 vs. NCBI nr
Match: gi|778656670|ref|XP_011649488.1| (PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 84/116 (72.41%), Postives = 85/116 (73.28%), Query Frame = -2


Query: 155 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 214
           KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ
Sbjct: 331 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 390

Query: 215 ACQKQFQDQXXXXXXXXXXXXXXXXXXDHDNXXXXXXXXXXXXITTEGEVEKDQST 274
           ACQKQFQ +                  DHDN            ITTEGEVEKDQST
Sbjct: 391 ACQKQFQAKTKTKTKTTTTTTSTSAATDHDNYSSVAFSYVSSVITTEGEVEKDQST 446

Query: 275  334
           
Sbjct: 451  446

Query: 335  394
           
Sbjct: 511  446

Query: 395  454
           
Sbjct: 571  446

Query: 455  503
           
Sbjct: 631  446

[Close]

BLAST of CU097366 vs. NCBI nr
Match: gi|659066251|ref|XP_008452902.1| (PREDICTED: protein SHOOT GRAVITROPISM 5-like [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 3.6e-30
Identity = 84/118 (71.19%), Postives = 85/118 (72.03%), Query Frame = -2


Query: 155 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 214
           KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ
Sbjct: 331 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 390

Query: 215 ACQKQFQ--DQXXXXXXXXXXXXXXXXXXDHDNXXXXXXXXXXXXITTEGEVEKDQST 274
           ACQKQFQ   +                  DHDN            ITTEGEVEKDQST
Sbjct: 391 ACQKQFQAKAKTKTKTTTTTTTTTTSAATDHDNYSSVAFSYVSSVITTEGEVEKDQST 448

Query: 275  334
           
Sbjct: 451  448

Query: 335  394
           
Sbjct: 511  448

Query: 395  454
           
Sbjct: 571  448

Query: 455  503
           
Sbjct: 631  448

[Close]

BLAST of CU097366 vs. NCBI nr
Match: gi|920686925|gb|KOM30908.1| (hypothetical protein LR48_Vigan01g046300 [Vigna angularis])

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = -2


Query: 302 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 361
           KAYAEEARKQAKRQIE+AE+EF NAKR+RQQAQAELDKA ALK+ A+KQINST+L+ITC 
Sbjct: 361 KAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCH 420

Query: 362 ACQKQFQ 421
           AC++QFQ
Sbjct: 421 ACKQQFQ 427

Query: 422  481
           
Sbjct: 481  427

Query: 482  503
           
Sbjct: 541  427

[Close]

BLAST of CU097366 vs. NCBI nr
Match: gi|1012329612|gb|KYP41183.1| (Zinc finger protein MAGPIE [Cajanus cajan])

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = -2


Query: 302 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 361
           KAYAEEARKQAKRQIE+AE+EF NAKR+RQQAQAELDKA ALK+ A+KQINST+L+ITC 
Sbjct: 302 KAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCH 361

Query: 362 ACQKQFQ 421
           AC++QFQ
Sbjct: 362 ACKQQFQ 368

Query: 422  481
           
Sbjct: 422  368

Query: 482  503
           
Sbjct: 482  368

[Close]

BLAST of CU097366 vs. NCBI nr
Match: gi|593704505|ref|XP_007152626.1| (hypothetical protein PHAVU_004G145900g [Phaseolus vulgaris])

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-18
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = -2


Query: 302 KAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQ 361
           KAYAEEARKQAKRQIE+AE+EF NAKR+RQQAQAELDKA ALK+ A+KQINST+L+ITC 
Sbjct: 361 KAYAEEARKQAKRQIEVAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCH 420

Query: 362 ACQKQFQ 421
           AC++QFQ
Sbjct: 421 ACKQQFQ 427

Query: 422  481
           
Sbjct: 481  427

Query: 482  503
           
Sbjct: 541  427

The following BLAST results are available for this feature:

BLAST of CU097366 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IDD16_ARATH	1.2e-14	56.25	Protein indeterminate-domain 16 OS=Arabidopsis thaliana GN=IDD16 PE=2 SV=1	[more]
IDD14_ARATH	7.5e-12	52.38	Protein indeterminate-domain 14 OS=Arabidopsis thaliana GN=IDD14 PE=1 SV=1	[more]

BLAST of CU097366 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPV5_CUCSA	1.7e-34	72.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G029620 PE=4 SV=1	[more]
A0A0L9VIL0_PHAAN	3.6e-21	80.60	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g046300 PE=4 SV=1	[more]
A0A151RFD5_CAJCA	3.6e-21	80.60	Zinc finger protein MAGPIE OS=Cajanus cajan GN=KK1_037443 PE=4 SV=1	[more]
A0A0S3TCE7_PHAAN	3.6e-21	80.60	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G219800 PE=...	[more]
V7C5Q2_PHAVU	4.7e-21	80.60	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G145900g PE=4 SV=1	[more]

BLAST of CU097366 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656670\|ref\|XP_011649488.1\|	1.1e-31	72.41	PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis sativus]	[more]
gi\|659066251\|ref\|XP_008452902.1\|	3.6e-30	71.19	PREDICTED: protein SHOOT GRAVITROPISM 5-like [Cucumis melo]	[more]
gi\|920686925\|gb\|KOM30908.1\|	1.8e-18	80.60	hypothetical protein LR48_Vigan01g046300 [Vigna angularis]	[more]
gi\|1012329612\|gb\|KYP41183.1\|	1.8e-18	80.60	Zinc finger protein MAGPIE [Cajanus cajan]	[more]
gi\|593704505\|ref\|XP_007152626.1\|	2.4e-18	80.60	hypothetical protein PHAVU_004G145900g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G029620	Csa1G029620	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0024965	G0024965	EST
G0038278	G0038278	EST
G0042337	G0042337	EST
G0077993	G0077993	EST
G0105172	G0105172	EST
G0132274	G0132274	EST
G0132718	G0132718	EST
G0135640	G0135640	EST
G0180800	G0180800	EST
G0210660	G0210660	EST
H0028674	H0028674	EST
H0050945	H0050945	EST
H0073755	H0073755	EST
H0079655	H0079655	EST
H0109089	H0109089	EST
H0133782	H0133782	EST
H0174825	H0174825	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 3..65 scor
None	No IPR available	PANTHER	PTHR34946	FAMILY NOT NAMED	coord: 4..83 score: 4.9
None	No IPR available	PANTHER	PTHR34946:SF2	PROTEIN SHOOT GRAVITROPISM 5	coord: 4..83 score: 4.9