CU096346 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU096346
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 6337237 .. 6338440 (+)
Sequence length684
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CCGACTCTCTCTTTCTCTACATTCTCCTCCACCAATGACTTGCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATATCATCATCATCATTATCTTCTTTTTCTTTCTTCCTCTTCTTCTTCCTCATGTGTAAATTTAGGGAATTCATATAAAAGAGGAAAATTTTAATTGAACAAAGTTGAGAAAAAGTATTGACCAGGTCCCTTAAGGACCAACCCAACCCCTACATCAATTGCTTTTGCTGCTTACAAATGACAGAGTTGCAGCCTATGAGCAATGATTTAGAAGCTTGAATAAGCCCTTCGAACATCAAAACTTCTTCAATTTTACTCAACTGATCATACATAGTGCAGGAAAGGAGACGAGGTAACAGAGATGATCATTCCTGTTTCATATCTTCGTCTAATTGCATTTACTTTATCCATTAGATCCATCAAAAACTGCCTTGTGTGCTCTGCCGTCGTTTTTCTCGCCAATTTTCTCCCCACATCTTGGCCTCGGCAACTGCACGTTCTCTGTCTAAATCCCTATTCAAAATCCTAGCAGTCTCCCTTGGGGAATCGTCCTTCTCGGGACCATCCAATGGCCACCTTCGTCCAGATGCTCCACCTTCTTCATTCTTTACCATCCCTCCTCCACCTTTCTCGTCTCTATTCCGTCTTTCAT
Homology
[Close]
BLAST of CU096346 vs. Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.7e-18
Identity = 46/74 (62.16%), Postives = 52/74 (70.27%), Query Frame = -3 

Query: 458 RRNRDXXXXXXXXXXXXXXASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWG 517
           RRNRD               SG ++ L+G EK+DSPRETARILNRD++RERAVAEAKMWG
Sbjct: 376 RRNRDERGARLITRNDDGGGSGSKFDLEGSEKEDSPRETARILNRDINRERAVAEAKMWG 435

Query: 518 ENWREKRRQSTQGS 577
           E+ REKRRQS QG+
Sbjct: 436 ESLREKRRQSEQGT 449

Query: 578  637
           
Sbjct: 496  449

Query: 638  680
           
Sbjct: 556  449

[Close]
BLAST of CU096346 vs. TrEMBL
Match: A0A0A0KFA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G092530 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-26
Identity = 62/76 (81.58%), Postives = 62/76 (81.58%), Query Frame = -3 

Query: 455 ERRNRDXXXXXXXXXXXXXXASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 514
           ERRNRD              ASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW
Sbjct: 389 ERRNRDEKGGGGMVKNEEGGASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 448

Query: 515 GENWREKRRQSTQGSF 574
           GENWREKRRQSTQGSF
Sbjct: 449 GENWREKRRQSTQGSF 464

Query: 575  634
           
Sbjct: 509  464

Query: 635  683
           
Sbjct: 569  464

[Close]
BLAST of CU096346 vs. TrEMBL
Match: M5XN53_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005276mg PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.5e-21
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = -3 

Query: 455 ERRNRDXXXXXXXXXXXXXXASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 514
           ERR+RD               SGRRW LDG EKDDSP+ETAR+LNRDLDRERAVAEAKMW
Sbjct: 390 ERRHRDERGGRILKNEEGG-GSGRRWDLDGSEKDDSPKETARMLNRDLDRERAVAEAKMW 449

Query: 515 GENWREKRRQSTQGSF 574
           GENWREKRRQS QGSF
Sbjct: 450 GENWREKRRQSAQGSF 464

Query: 575  634
           
Sbjct: 510  464

Query: 635  683
           
Sbjct: 570  464

[Close]
BLAST of CU096346 vs. TrEMBL
Match: A0A061E5W6_THECC (Kinase superfamily protein OS=Theobroma cacao GN=TCM_008494 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = -3 

Query: 455 ASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSF 514
           ASGRRW L+G EK+DSPRETAR+LNRDLDRERAVAEAKMWGENWREKRRQS QGSF
Sbjct: 403 ASGRRWDLEGSEKEDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSAQGSF 458

Query: 515  574
           
Sbjct: 463  458

Query: 575  623
           
Sbjct: 523  458

[Close]
BLAST of CU096346 vs. TrEMBL
Match: B9GZC6_POPTR (Serine/threonine-protein kinase PBS1 OS=Populus trichocarpa GN=POPTR_0003s16530g PE=3 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = -3 

Query: 455 SGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSF 514
           SGR+W LDG EK+DSPRETAR+LNRDLDRERAVAEAKMWGENWREKRRQS QGSF
Sbjct: 403 SGRKWDLDGSEKEDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSAQGSF 457

Query: 515  574
           
Sbjct: 463  457

Query: 575  620
           
Sbjct: 523  457

[Close]
BLAST of CU096346 vs. TrEMBL
Match: F6I1N7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0146g00250 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.9e-20
Identity = 53/76 (69.74%), Postives = 58/76 (76.32%), Query Frame = -3 

Query: 455 ERRNRDXXXXXXXXXXXXXXASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 514
           ERRNR+               SGRRW L+G E++DSPRETAR+LNRDLDRERAVAEAKMW
Sbjct: 385 ERRNREERSARVTRNEDGG-GSGRRWDLEGSEREDSPRETARMLNRDLDRERAVAEAKMW 444

Query: 515 GENWREKRRQSTQGSF 574
           GENWREKRRQS QGSF
Sbjct: 445 GENWREKRRQSAQGSF 459

Query: 575  634
           
Sbjct: 505  459

Query: 635  683
           
Sbjct: 565  459

[Close]
BLAST of CU096346 vs. NCBI nr
Match: gi|449445572|ref|XP_004140546.1| (PREDICTED: serine/threonine-protein kinase PBS1 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 62/76 (81.58%), Postives = 62/76 (81.58%), Query Frame = -3 

Query: 455 ERRNRDXXXXXXXXXXXXXXASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 514
           ERRNRD              ASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW
Sbjct: 389 ERRNRDEKGGGGMVKNEEGGASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 448

Query: 515 GENWREKRRQSTQGSF 574
           GENWREKRRQSTQGSF
Sbjct: 449 GENWREKRRQSTQGSF 464

Query: 575  634
           
Sbjct: 509  464

Query: 635  683
           
Sbjct: 569  464

[Close]
BLAST of CU096346 vs. NCBI nr
Match: gi|659119878|ref|XP_008459890.1| (PREDICTED: serine/threonine-protein kinase PBS1 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 62/76 (81.58%), Postives = 62/76 (81.58%), Query Frame = -3 

Query: 455 ERRNRDXXXXXXXXXXXXXXASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 514
           ERRNRD              ASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW
Sbjct: 390 ERRNRDEKGGGGMVKNEEGGASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 449

Query: 515 GENWREKRRQSTQGSF 574
           GENWREKRRQSTQGSF
Sbjct: 450 GENWREKRRQSTQGSF 465

Query: 575  634
           
Sbjct: 510  465

Query: 635  683
           
Sbjct: 570  465

[Close]
BLAST of CU096346 vs. NCBI nr
Match: gi|645231063|ref|XP_008222220.1| (PREDICTED: serine/threonine-protein kinase PBS1 [Prunus mume])

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = -3 

Query: 455 ERRNRDXXXXXXXXXXXXXXASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 514
           ERR+RD               SGRRW LDG EKDDSP+ETAR+LNRDLDRERAVAEAKMW
Sbjct: 390 ERRHRDERGGRILKNEEGG-GSGRRWDLDGSEKDDSPKETARMLNRDLDRERAVAEAKMW 449

Query: 515 GENWREKRRQSTQGSF 574
           GENWREKRRQS QGSF
Sbjct: 450 GENWREKRRQSAQGSF 464

Query: 575  634
           
Sbjct: 510  464

Query: 635  683
           
Sbjct: 570  464

[Close]
BLAST of CU096346 vs. NCBI nr
Match: gi|596287164|ref|XP_007225732.1| (hypothetical protein PRUPE_ppa005276mg [Prunus persica])

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = -3 

Query: 455 ERRNRDXXXXXXXXXXXXXXASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMW 514
           ERR+RD               SGRRW LDG EKDDSP+ETAR+LNRDLDRERAVAEAKMW
Sbjct: 390 ERRHRDERGGRILKNEEGG-GSGRRWDLDGSEKDDSPKETARMLNRDLDRERAVAEAKMW 449

Query: 515 GENWREKRRQSTQGSF 574
           GENWREKRRQS QGSF
Sbjct: 450 GENWREKRRQSAQGSF 464

Query: 575  634
           
Sbjct: 510  464

Query: 635  683
           
Sbjct: 570  464

[Close]
BLAST of CU096346 vs. NCBI nr
Match: gi|590691769|ref|XP_007043875.1| (Kinase superfamily protein [Theobroma cacao])

HSP 1 Score: 107.1 bits (266), Expect = 4.2e-20
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = -3 

Query: 455 ASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSF 514
           ASGRRW L+G EK+DSPRETAR+LNRDLDRERAVAEAKMWGENWREKRRQS QGSF
Sbjct: 403 ASGRRWDLEGSEKEDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSAQGSF 458

Query: 515  574
           
Sbjct: 463  458

Query: 575  623
           
Sbjct: 523  458

The following BLAST results are available for this feature:
BLAST of CU096346 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PBS1_ARATH6.7e-1862.16Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1[more]
BLAST of CU096346 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFA2_CUCSA1.6e-2681.58Uncharacterized protein OS=Cucumis sativus GN=Csa_6G092530 PE=3 SV=1[more]
M5XN53_PRUPE4.5e-2172.37Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005276mg PE=3 SV=1[more]
A0A061E5W6_THECC1.0e-2089.29Kinase superfamily protein OS=Theobroma cacao GN=TCM_008494 PE=3 SV=1[more]
B9GZC6_POPTR2.2e-2089.09Serine/threonine-protein kinase PBS1 OS=Populus trichocarpa GN=POPTR_0003s16530g... [more]
F6I1N7_VITVI2.9e-2069.74Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0146g00250 PE=3 SV=... [more]
BLAST of CU096346 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445572|ref|XP_004140546.1|1.1e-2581.58PREDICTED: serine/threonine-protein kinase PBS1 [Cucumis sativus][more]
gi|659119878|ref|XP_008459890.1|1.1e-2581.58PREDICTED: serine/threonine-protein kinase PBS1 [Cucumis melo][more]
gi|645231063|ref|XP_008222220.1|3.2e-2072.37PREDICTED: serine/threonine-protein kinase PBS1 [Prunus mume][more]
gi|596287164|ref|XP_007225732.1|3.2e-2072.37hypothetical protein PRUPE_ppa005276mg [Prunus persica][more]
gi|590691769|ref|XP_007043875.1|4.2e-2089.29Kinase superfamily protein [Theobroma cacao][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G092520Csa6G092520gene
Csa6G092530Csa6G092530gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02K0KLSFKNP3UI02K0KLSEST
G0007304G0007304EST
G0012494G0012494EST
G0082814G0082814EST
G0084038G0084038EST
G0138792G0138792EST
G0146802G0146802EST
G0158467G0158467EST
G0161623G0161623EST
G0167196G0167196EST
G0167243G0167243EST
G0173297G0173297EST
G0178588G0178588EST
G0197329G0197329EST
G0201767G0201767EST
H0006207H0006207EST
H0020628H0020628EST
H0090427H0090427EST
H0100493H0100493EST
H0102323H0102323EST
H0123287H0123287EST
H0129888H0129888EST
H0134488H0134488EST
H0147678H0147678EST
H0157362H0157362EST
H0163075H0163075EST